Running as unit: rb-build-amd64_1-22552.service ==================================================================================== Fri Nov 22 16:51:33 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_1) on jenkins, called using "ionos1-amd64 ionos5-amd64" as arguments. Fri Nov 22 16:51:33 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-IQjkCJKJ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 16:51:33 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Nov 22 16:51:33 UTC 2024 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Emcuzg' Fri Nov 22 16:51:33 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Nov 22 16:51:33 UTC 2024 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-HPK11x' ok, let's check if sprai is building anywhere yet… ok, sprai is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of sprai in trixie on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Fri Nov 22 16:51:47 UTC 2024 I: starting to build sprai/trixie/amd64 on jenkins on '2024-11-22 16:51' Fri Nov 22 16:51:47 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_1/22552/console.log 1732294307 amd64 trixie sprai Fri Nov 22 16:51:47 UTC 2024 I: Downloading source for trixie/sprai=0.9.9.23+dfsg1-3 --2024-11-22 16:51:47-- http://deb.debian.org/debian/pool/main/s/sprai/sprai_0.9.9.23%2bdfsg1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2184 (2.1K) [text/prs.lines.tag] Saving to: ‘sprai_0.9.9.23+dfsg1-3.dsc’ 0K .. 100% 340M=0s 2024-11-22 16:51:48 (340 MB/s) - ‘sprai_0.9.9.23+dfsg1-3.dsc’ saved [2184/2184] --2024-11-22 16:51:47-- http://deb.debian.org/debian/pool/main/s/sprai/sprai_0.9.9.23%2bdfsg1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2184 (2.1K) [text/prs.lines.tag] Saving to: ‘sprai_0.9.9.23+dfsg1-3.dsc’ 0K .. 100% 340M=0s 2024-11-22 16:51:48 (340 MB/s) - ‘sprai_0.9.9.23+dfsg1-3.dsc’ saved [2184/2184] Fri Nov 22 16:51:48 UTC 2024 I: sprai_0.9.9.23+dfsg1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sprai Binary: sprai Architecture: any Version: 0.9.9.23+dfsg1-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://web.archive.org/web/20180316202959/http://zombie.cb.k.u-tokyo.ac.jp/sprai/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/sprai Vcs-Git: https://salsa.debian.org/med-team/sprai.git Build-Depends: debhelper-compat (= 13) Package-List: sprai deb science optional arch=any Checksums-Sha1: 4c0617d846c40ce0c8e75238e85cd8268dae100f 60428 sprai_0.9.9.23+dfsg1.orig.tar.xz b348a782451fb41a56004b8169731a5948e96ccd 1446952 sprai_0.9.9.23+dfsg1-3.debian.tar.xz Checksums-Sha256: b7190784e07c803e465a07b4b3a0ba086b8c82c93878c4e252e8c715d20d22c2 60428 sprai_0.9.9.23+dfsg1.orig.tar.xz d45516177d79a7e4110a542affd51376fbb56e88862a5f54e7e02d6e29358e5d 1446952 sprai_0.9.9.23+dfsg1-3.debian.tar.xz Files: 91389cbe7e99874c959933859e76d7bb 60428 sprai_0.9.9.23+dfsg1.orig.tar.xz aa6eb84ab483da9517a1c0d35d734004 1446952 sprai_0.9.9.23+dfsg1-3.debian.tar.xz Dgit: aa333095bd67900d4df8989ea094d9288aad7abb debian archive/debian/0.9.9.23+dfsg1-3 https://git.dgit.debian.org/sprai -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbPhWUUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqoLw/+PqfUk7J+EXvZY7DPymtbKenzZF8m qrzyHNglzCSnGTQmQO0al0G7wnCApIMeAssx7aIyviSgBxHVY6YQJi/qm/v5F5QC /lndYAzsdZdU1Axd3youLxGmCCDjRjXf3l22pR/yjbMWEMvCV9vMV9ZkCHnYGf0F AZ+y43iP3pi3QMGtdi89SF81KhR/Yo0d0/ooT7bBe2EHT4ozboOkwfw2YmGESh3M mRI/sWrzORKRhcy0EKFSaZ9xti/jhik74BQJAPIrtVf+vWF5zNbzRm6guEtXvRyq H3T9PkHwQUhx0fizmg0m8yXS1cZW3fV4vCFBum+YH+z5A6XSij1yM8tCwA07ASQg cl0TQhnT/l09lLGllSQgi26zSuGMvHInYqZ1wxiGGbxYm0jMW7xYIHfEuLwQAeaL 6lqMssJ9tsJOxi5PYS+4yMATpaB/HCoHNoGQ/e3K2OjYQ+pMdz2+X7ZlpPVfrDkL WZNSu21edwNq6hhBSzfERfe6NY2wMpkytB+cTt5Lt5aMVTBweqqTrJtOx+klUiZT XJhxMlAl7X6tdaqx38qO1g4wwe4NpDgiYliCI8TL9Y/BFQCni0CzSMq0/WSpTELn i5PHPVx1GdYmOhkWUoit6ouQNQnASMIXHWt1xrWdhb7vkASB4aTMEEXTlgPj/vLT isNPB+WMR3YFj+k= =kgDy -----END PGP SIGNATURE----- Fri Nov 22 16:51:48 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 16:51:48 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Nov 22 16:51:48 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Nov 22 16:51:48 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Nov 22 16:51:48 UTC 2024 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-PHg7uD' ==================================================================================== Fri Nov 22 16:51:49 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 sprai trixie /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku 0.9.9.23+dfsg1-3" as arguments. Fri Nov 22 16:51:49 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-iMIcNzuL" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 16:51:49 UTC 2024 I: Downloading source for trixie/sprai=0.9.9.23+dfsg1-3 Reading package lists... NOTICE: 'sprai' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sprai.git Please use: git clone https://salsa.debian.org/med-team/sprai.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1510 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (dsc) [2184 B] Get:2 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (tar) [60.4 kB] Get:3 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (diff) [1447 kB] Fetched 1510 kB in 0s (22.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sprai' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sprai.git Please use: git clone https://salsa.debian.org/med-team/sprai.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1510 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (dsc) [2184 B] Get:2 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (tar) [60.4 kB] Get:3 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (diff) [1447 kB] Fetched 1510 kB in 0s (22.3 MB/s) Download complete and in download only mode ============================================================================= Building sprai in trixie on amd64 on ionos1-amd64 now. Date: Fri Nov 22 16:51:49 UTC 2024 Date UTC: Fri Nov 22 16:51:49 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 04:51:49 -12 2024 I: pbuilder-time-stamp: 1732294309 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sprai_0.9.9.23+dfsg1-3.dsc] I: copying [./sprai_0.9.9.23+dfsg1.orig.tar.xz] I: copying [./sprai_0.9.9.23+dfsg1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Aug 28 20:15:33 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sprai_0.9.9.23+dfsg1-3.dsc: no acceptable signature found dpkg-source: info: extracting sprai in sprai-0.9.9.23+dfsg1 dpkg-source: info: unpacking sprai_0.9.9.23+dfsg1.orig.tar.xz dpkg-source: info: unpacking sprai_0.9.9.23+dfsg1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying libexec.patch dpkg-source: info: applying example-specs.patch dpkg-source: info: applying makefile.patch dpkg-source: info: applying no-pwd.patch dpkg-source: info: applying flags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2684764/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='77f1b38856a04ec9bacd6551794b9263' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2684764' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/pbuilderrc_WyKE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b1 --logfile b1/build.log sprai_0.9.9.23+dfsg1-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2684764/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Fetched 19.8 MB in 2s (9826 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sprai_0.9.9.23+dfsg1-3_source.changes dpkg-buildpackage: info: source package sprai dpkg-buildpackage: info: source version 0.9.9.23+dfsg1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=makefile dh_auto_clean -O--buildsystem=makefile dh_autoreconf_clean -O--buildsystem=makefile dh_clean -O--buildsystem=makefile debian/rules binary dh binary --buildsystem=makefile dh_update_autotools_config -O--buildsystem=makefile dh_autoreconf -O--buildsystem=makefile dh_auto_configure -O--buildsystem=makefile dh_auto_build -O--buildsystem=makefile make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o bfmt72s bfmt72s.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o nss2v_v3 nss2v_v3.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o myrealigner myrealigner.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o m52bfmt7 m52bfmt7.c nss2v_v3.c: In function 'get_sam_record': nss2v_v3.c:471:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 471 | fgets(buf+line_length, buffer_size + 1, in_sam); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bfmt72s.c: In function 'main': bfmt72s.c:444:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 444 | fgets(buf+line_length, LBUF + 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_auto_test -O--buildsystem=makefile create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=makefile dh_prep -O--buildsystem=makefile dh_auto_install --destdir=debian/sprai/ -O--buildsystem=makefile make -j20 install DESTDIR=/build/reproducible-path/sprai-0.9.9.23\+dfsg1/debian/sprai AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' chmod 766 bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl mkdir -vp /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ mkdir: created directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr' mkdir: created directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/' cp -p bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' mkdir -p /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/lib/sprai cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin \ && mv * ../lib/sprai/ \ && mv ../lib/sprai/ezez* . cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin \ && \ for script in *; \ do \ mv $script $(basename $script .pl) \ && ln -sf $(basename $script .pl) $script; \ done dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installdocs -O--buildsystem=makefile debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installchangelogs doc/_build/html/_sources/index.txt make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installexamples -O--buildsystem=makefile debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installsystemduser -O--buildsystem=makefile dh_perl -O--buildsystem=makefile dh_link -O--buildsystem=makefile dh_strip_nondeterminism -O--buildsystem=makefile dh_compress -O--buildsystem=makefile dh_fixperms -O--buildsystem=makefile dh_missing -O--buildsystem=makefile dh_dwz -a -O--buildsystem=makefile dh_strip -a -O--buildsystem=makefile dh_makeshlibs -a -O--buildsystem=makefile dh_shlibdeps -a -O--buildsystem=makefile dh_installdeb -O--buildsystem=makefile dh_gencontrol -O--buildsystem=makefile dh_md5sums -O--buildsystem=makefile dh_builddeb -O--buildsystem=makefile dpkg-deb: building package 'sprai' in '../sprai_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-deb: building package 'sprai-dbgsym' in '../sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../sprai_0.9.9.23+dfsg1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../sprai_0.9.9.23+dfsg1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2684764 and its subdirectories I: Current time: Fri Nov 22 04:54:05 -12 2024 I: pbuilder-time-stamp: 1732294445 Fri Nov 22 16:54:05 UTC 2024 I: Signing ./b1/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo as sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc Fri Nov 22 16:54:05 UTC 2024 I: Signed ./b1/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo as ./b1/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc Fri Nov 22 16:54:05 UTC 2024 - build #1 for sprai/trixie/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Fri Nov 22 16:54:05 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-iMIcNzuL, removing. /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 16:54 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 16:51 b2 -rw------- 1 jenkins jenkins 3312 Nov 22 16:51 rbuildlog.ZFNOdRr -rw-r--r-- 1 jenkins jenkins 2184 Aug 28 20:29 sprai_0.9.9.23+dfsg1-3.dsc /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b1: total 3020 -rw-r--r-- 1 jenkins jenkins 22833 Nov 22 16:54 build.log -rw-r--r-- 1 jenkins jenkins 72756 Nov 22 16:54 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1446952 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2184 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3.dsc -rw-r--r-- 1 jenkins jenkins 4997 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5879 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1823 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1512668 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1696 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b2: total 0 Fri Nov 22 16:54:05 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 04:51:49 -12 2024 I: pbuilder-time-stamp: 1732294309 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sprai_0.9.9.23+dfsg1-3.dsc] I: copying [./sprai_0.9.9.23+dfsg1.orig.tar.xz] I: copying [./sprai_0.9.9.23+dfsg1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Aug 28 20:15:33 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sprai_0.9.9.23+dfsg1-3.dsc: no acceptable signature found dpkg-source: info: extracting sprai in sprai-0.9.9.23+dfsg1 dpkg-source: info: unpacking sprai_0.9.9.23+dfsg1.orig.tar.xz dpkg-source: info: unpacking sprai_0.9.9.23+dfsg1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying libexec.patch dpkg-source: info: applying example-specs.patch dpkg-source: info: applying makefile.patch dpkg-source: info: applying no-pwd.patch dpkg-source: info: applying flags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2684764/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='77f1b38856a04ec9bacd6551794b9263' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2684764' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/pbuilderrc_WyKE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b1 --logfile b1/build.log sprai_0.9.9.23+dfsg1-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2684764/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Fetched 19.8 MB in 2s (9826 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sprai_0.9.9.23+dfsg1-3_source.changes dpkg-buildpackage: info: source package sprai dpkg-buildpackage: info: source version 0.9.9.23+dfsg1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=makefile dh_auto_clean -O--buildsystem=makefile dh_autoreconf_clean -O--buildsystem=makefile dh_clean -O--buildsystem=makefile debian/rules binary dh binary --buildsystem=makefile dh_update_autotools_config -O--buildsystem=makefile dh_autoreconf -O--buildsystem=makefile dh_auto_configure -O--buildsystem=makefile dh_auto_build -O--buildsystem=makefile make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o bfmt72s bfmt72s.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o nss2v_v3 nss2v_v3.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o myrealigner myrealigner.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o m52bfmt7 m52bfmt7.c nss2v_v3.c: In function 'get_sam_record': nss2v_v3.c:471:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 471 | fgets(buf+line_length, buffer_size + 1, in_sam); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bfmt72s.c: In function 'main': bfmt72s.c:444:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 444 | fgets(buf+line_length, LBUF + 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_auto_test -O--buildsystem=makefile create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=makefile dh_prep -O--buildsystem=makefile dh_auto_install --destdir=debian/sprai/ -O--buildsystem=makefile make -j20 install DESTDIR=/build/reproducible-path/sprai-0.9.9.23\+dfsg1/debian/sprai AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' chmod 766 bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl mkdir -vp /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ mkdir: created directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr' mkdir: created directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/' cp -p bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' mkdir -p /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/lib/sprai cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin \ && mv * ../lib/sprai/ \ && mv ../lib/sprai/ezez* . cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin \ && \ for script in *; \ do \ mv $script $(basename $script .pl) \ && ln -sf $(basename $script .pl) $script; \ done dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installdocs -O--buildsystem=makefile debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installchangelogs doc/_build/html/_sources/index.txt make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installexamples -O--buildsystem=makefile debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installsystemduser -O--buildsystem=makefile dh_perl -O--buildsystem=makefile dh_link -O--buildsystem=makefile dh_strip_nondeterminism -O--buildsystem=makefile dh_compress -O--buildsystem=makefile dh_fixperms -O--buildsystem=makefile dh_missing -O--buildsystem=makefile dh_dwz -a -O--buildsystem=makefile dh_strip -a -O--buildsystem=makefile dh_makeshlibs -a -O--buildsystem=makefile dh_shlibdeps -a -O--buildsystem=makefile dh_installdeb -O--buildsystem=makefile dh_gencontrol -O--buildsystem=makefile dh_md5sums -O--buildsystem=makefile dh_builddeb -O--buildsystem=makefile dpkg-deb: building package 'sprai' in '../sprai_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-deb: building package 'sprai-dbgsym' in '../sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../sprai_0.9.9.23+dfsg1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../sprai_0.9.9.23+dfsg1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2684764 and its subdirectories I: Current time: Fri Nov 22 04:54:05 -12 2024 I: pbuilder-time-stamp: 1732294445 Fri Nov 22 16:54:06 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Nov 22 16:54:06 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Nov 22 16:54:06 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Nov 22 16:54:06 UTC 2024 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-v1vBwk' ==================================================================================== Thu Dec 25 23:17:07 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "2 sprai trixie /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku 0.9.9.23+dfsg1-3" as arguments. Thu Dec 25 23:17:07 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-lvklv2RN" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 25 23:17:07 UTC 2025 I: Downloading source for trixie/sprai=0.9.9.23+dfsg1-3 Reading package lists... NOTICE: 'sprai' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sprai.git Please use: git clone https://salsa.debian.org/med-team/sprai.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1510 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (dsc) [2184 B] Get:2 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (tar) [60.4 kB] Get:3 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (diff) [1447 kB] Fetched 1510 kB in 0s (20.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sprai' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sprai.git Please use: git clone https://salsa.debian.org/med-team/sprai.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1510 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (dsc) [2184 B] Get:2 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (tar) [60.4 kB] Get:3 http://deb.debian.org/debian trixie/main sprai 0.9.9.23+dfsg1-3 (diff) [1447 kB] Fetched 1510 kB in 0s (20.6 MB/s) Download complete and in download only mode ============================================================================= Re-Building sprai in trixie on amd64 on ionos5-amd64 now. Date: Thu Dec 25 23:17:07 UTC 2025 Date UTC: Thu Dec 25 23:17:07 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/pbuilderrc_0r5i + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' sprai = debian-installer -o sprai = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' sprai = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/pbuilderrc_0r5i --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b2 --logfile b2/build.log sprai_0.9.9.23+dfsg1-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 26 13:17:07 +14 2025 I: pbuilder-time-stamp: 1766704627 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sprai_0.9.9.23+dfsg1-3.dsc] I: copying [./sprai_0.9.9.23+dfsg1.orig.tar.xz] I: copying [./sprai_0.9.9.23+dfsg1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Aug 28 20:15:33 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sprai_0.9.9.23+dfsg1-3.dsc: no acceptable signature found dpkg-source: info: extracting sprai in sprai-0.9.9.23+dfsg1 dpkg-source: info: unpacking sprai_0.9.9.23+dfsg1.orig.tar.xz dpkg-source: info: unpacking sprai_0.9.9.23+dfsg1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying libexec.patch dpkg-source: info: applying example-specs.patch dpkg-source: info: applying makefile.patch dpkg-source: info: applying no-pwd.patch dpkg-source: info: applying flags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 25 23:17 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=ff4b93ccad2f4cda82de4af00e17153d LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3203389 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/pbuilderrc_0r5i --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b2 --logfile b2/build.log sprai_0.9.9.23+dfsg1-3.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Fetched 19.8 MB in 0s (134 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sprai_0.9.9.23+dfsg1-3_source.changes dpkg-buildpackage: info: source package sprai dpkg-buildpackage: info: source version 0.9.9.23+dfsg1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=makefile dh_auto_clean -O--buildsystem=makefile dh_autoreconf_clean -O--buildsystem=makefile dh_clean -O--buildsystem=makefile debian/rules binary dh binary --buildsystem=makefile dh_update_autotools_config -O--buildsystem=makefile dh_autoreconf -O--buildsystem=makefile dh_auto_configure -O--buildsystem=makefile dh_auto_build -O--buildsystem=makefile make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o bfmt72s bfmt72s.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o nss2v_v3 nss2v_v3.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o myrealigner myrealigner.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o m52bfmt7 m52bfmt7.c bfmt72s.c: In function 'main': bfmt72s.c:444:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 444 | fgets(buf+line_length, LBUF + 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nss2v_v3.c: In function 'get_sam_record': nss2v_v3.c:471:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 471 | fgets(buf+line_length, buffer_size + 1, in_sam); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_auto_test -O--buildsystem=makefile create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=makefile dh_prep -O--buildsystem=makefile dh_auto_install --destdir=debian/sprai/ -O--buildsystem=makefile make -j42 install DESTDIR=/build/reproducible-path/sprai-0.9.9.23\+dfsg1/debian/sprai AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' chmod 766 bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl mkdir -vp /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ mkdir: created directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr' mkdir: created directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/' cp -p bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' mkdir -p /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/lib/sprai cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin \ && mv * ../lib/sprai/ \ && mv ../lib/sprai/ezez* . cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin \ && \ for script in *; \ do \ mv $script $(basename $script .pl) \ && ln -sf $(basename $script .pl) $script; \ done dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installdocs -O--buildsystem=makefile debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installchangelogs doc/_build/html/_sources/index.txt make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installexamples -O--buildsystem=makefile debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_installsystemduser -O--buildsystem=makefile dh_perl -O--buildsystem=makefile dh_link -O--buildsystem=makefile dh_strip_nondeterminism -O--buildsystem=makefile dh_compress -O--buildsystem=makefile dh_fixperms -O--buildsystem=makefile dh_missing -O--buildsystem=makefile dh_dwz -a -O--buildsystem=makefile dh_strip -a -O--buildsystem=makefile dh_makeshlibs -a -O--buildsystem=makefile dh_shlibdeps -a -O--buildsystem=makefile dh_installdeb -O--buildsystem=makefile dh_gencontrol -O--buildsystem=makefile dh_md5sums -O--buildsystem=makefile dh_builddeb -O--buildsystem=makefile dpkg-deb: building package 'sprai-dbgsym' in '../sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-deb: building package 'sprai' in '../sprai_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../sprai_0.9.9.23+dfsg1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../sprai_0.9.9.23+dfsg1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3203389 and its subdirectories I: Current time: Fri Dec 26 13:17:49 +14 2025 I: pbuilder-time-stamp: 1766704669 + false + set +x Thu Dec 25 23:17:49 UTC 2025 I: Signing ./b2/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo as sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc Thu Dec 25 23:17:49 UTC 2025 I: Signed ./b2/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo as ./b2/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc Thu Dec 25 23:17:49 UTC 2025 - build #2 for sprai/trixie/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Thu Dec 25 23:17:49 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-lvklv2RN, removing. /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku: total 40 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 16:54 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 16:54 b2 -rw------- 1 jenkins jenkins 26431 Nov 22 16:54 rbuildlog.ZFNOdRr -rw-r--r-- 1 jenkins jenkins 2184 Aug 28 20:29 sprai_0.9.9.23+dfsg1-3.dsc /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b1: total 3032 -rw-r--r-- 1 jenkins jenkins 22833 Nov 22 16:54 build.log -rw-r--r-- 1 jenkins jenkins 72756 Nov 22 16:54 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1446952 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2184 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3.dsc -rw-r--r-- 1 jenkins jenkins 4997 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5879 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1823 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1512668 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1696 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b2: total 3024 -rw-r--r-- 1 jenkins jenkins 24773 Nov 22 16:54 build.log -rw-r--r-- 1 jenkins jenkins 72756 Nov 22 16:54 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1446952 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2184 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3.dsc -rw-r--r-- 1 jenkins jenkins 5006 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5888 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1823 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1512668 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1696 Nov 22 16:54 sprai_0.9.9.23+dfsg1-3_source.changes Fri Nov 22 16:54:50 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Nov 22 16:54:51 UTC 2024 I: sprai_0.9.9.23+dfsg1-3_amd64.changes: Format: 1.8 Date: Wed, 28 Aug 2024 21:31:44 +0200 Source: sprai Binary: sprai sprai-dbgsym Architecture: amd64 Version: 0.9.9.23+dfsg1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: sprai - single-pass sequencing read accuracy improver Closes: 1047125 Changes: sprai (0.9.9.23+dfsg1-3) unstable; urgency=medium . * d/clean: new: fix double source build failure. (Closes: #1047125) * d/rules: activate hardwning flags. * flags.patch: propagate hardening flags to package targets. The patch is renamed from cflags.patch for naming consistency. * d/s/lintian-overrides: hide more unactionable hints. * d/control: bump to debhelper-compat 13. * d/control: declare compliance to standards version 4.7.0. * d/control: add myself to uploaders. Checksums-Sha1: 25c0f46e71298c9d07d9533ee5b5991a56e147ff 72756 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb 5eac724fdcc827c35c5d095f199f00a763e41b91 4997 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo 3cc37464d1e0e14a802bcb432dacce704a6e1f9f 1512668 sprai_0.9.9.23+dfsg1-3_amd64.deb Checksums-Sha256: 168c76b0ada9818cc071bca18702319735834b81b7c80f069c7e6b286260d716 72756 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb 085ff2e162f9948e03accd027ade6525e03fba2e692dcbe49692c5956bca3df5 4997 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo ca23d87d78c65b4307be67d1fc35934221363181f691d70ea273dd78966e9e84 1512668 sprai_0.9.9.23+dfsg1-3_amd64.deb Files: cfa0c5e591e05ed2d74ca9c0ac72994c 72756 debug optional sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb 0b5b21bf0082f9e3f5246e8d2e4f8d2c 4997 science optional sprai_0.9.9.23+dfsg1-3_amd64.buildinfo cb2b82e629fa8e7f684f3902c05b2817 1512668 science optional sprai_0.9.9.23+dfsg1-3_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/sprai_0.9.9.23+dfsg1-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/sprai_0.9.9.23+dfsg1-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/sprai_0.9.9.23+dfsg1-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/sprai_0.9.9.23+dfsg1-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/sprai_0.9.9.23+dfsg1-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-22 16:54:05.797823665 +0000 +++ b2/build.log 2024-11-22 16:54:50.555797727 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 22 04:51:49 -12 2024 -I: pbuilder-time-stamp: 1732294309 +I: Current time: Fri Dec 26 13:17:07 +14 2025 +I: pbuilder-time-stamp: 1766704627 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying flags.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2684764/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 25 23:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='77f1b38856a04ec9bacd6551794b9263' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2684764' - PS1='# ' - PS2='> ' + INVOCATION_ID=ff4b93ccad2f4cda82de4af00e17153d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3203389 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/pbuilderrc_WyKE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b1 --logfile b1/build.log sprai_0.9.9.23+dfsg1-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/pbuilderrc_0r5i --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b2 --logfile b2/build.log sprai_0.9.9.23+dfsg1-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2684764/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -142,7 +174,7 @@ Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] -Fetched 19.8 MB in 2s (9826 kB/s) +Fetched 19.8 MB in 0s (134 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -273,7 +305,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sprai_0.9.9.23+dfsg1-3_source.changes +I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sprai_0.9.9.23+dfsg1-3_source.changes dpkg-buildpackage: info: source package sprai dpkg-buildpackage: info: source version 0.9.9.23+dfsg1-3 dpkg-buildpackage: info: source distribution unstable @@ -291,27 +327,27 @@ dh_autoreconf -O--buildsystem=makefile dh_auto_configure -O--buildsystem=makefile dh_auto_build -O--buildsystem=makefile - make -j20 "INSTALL=install --strip-program=true" + make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o bfmt72s bfmt72s.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o nss2v_v3 nss2v_v3.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o myrealigner myrealigner.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o m52bfmt7 m52bfmt7.c -nss2v_v3.c: In function 'get_sam_record': -nss2v_v3.c:471:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 471 | fgets(buf+line_length, buffer_size + 1, in_sam); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bfmt72s.c: In function 'main': bfmt72s.c:444:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 444 | fgets(buf+line_length, LBUF + 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +nss2v_v3.c: In function 'get_sam_record': +nss2v_v3.c:471:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 471 | fgets(buf+line_length, buffer_size + 1, in_sam); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_auto_test -O--buildsystem=makefile create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=makefile dh_prep -O--buildsystem=makefile dh_auto_install --destdir=debian/sprai/ -O--buildsystem=makefile - make -j20 install DESTDIR=/build/reproducible-path/sprai-0.9.9.23\+dfsg1/debian/sprai AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + make -j42 install DESTDIR=/build/reproducible-path/sprai-0.9.9.23\+dfsg1/debian/sprai AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' chmod 766 bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl mkdir -vp /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ @@ -362,8 +398,8 @@ dh_gencontrol -O--buildsystem=makefile dh_md5sums -O--buildsystem=makefile dh_builddeb -O--buildsystem=makefile -dpkg-deb: building package 'sprai' in '../sprai_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-deb: building package 'sprai-dbgsym' in '../sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb'. +dpkg-deb: building package 'sprai' in '../sprai_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../sprai_0.9.9.23+dfsg1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../sprai_0.9.9.23+dfsg1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -371,12 +407,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3203389/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2684764 and its subdirectories -I: Current time: Fri Nov 22 04:54:05 -12 2024 -I: pbuilder-time-stamp: 1732294445 +I: removing directory /srv/workspace/pbuilder/3203389 and its subdirectories +I: Current time: Fri Dec 26 13:17:49 +14 2025 +I: pbuilder-time-stamp: 1766704669 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/sprai_0.9.9.23+dfsg1-3.diff: 69.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/sprai_0.9.9.23+dfsg1-3.diff.gz b2/build.log: 74.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 75.7% -- replaced with stdout Fri Nov 22 16:54:52 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_sprai_trixie_amd64_1732294492 + touch /var/log/reproducible-builds/diffoscope_stamp_sprai_trixie_amd64_1732294492 + RESULT=0 + systemd-run '--description=diffoscope on sprai/0.9.9.23+dfsg1-3 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_1-22552 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku --run-session -c jenkins-reproducible-trixie-diffoscope-88a784fe-49bd-4949-aa1b-f19646a151e8 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/dbd-tmp-SgQWYQW ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/sprai_0.9.9.23+dfsg1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/sprai_0.9.9.23+dfsg1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/sprai_0.9.9.23+dfsg1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b1/sprai_0.9.9.23+dfsg1-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b2/sprai_0.9.9.23+dfsg1-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_1-22552.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/sprai_0.9.9.23+dfsg1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/sprai_0.9.9.23+dfsg1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/sprai_0.9.9.23+dfsg1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b1/sprai_0.9.9.23+dfsg1-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.c1uwmlku/b2/sprai_0.9.9.23+dfsg1-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.395s) 0.395s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.030s) 0.030s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 705ms CPU time consumed: 702ms _ ___ _ __ _ __ __ _(_) / __| '_ \| '__/ _` | | \__ \ |_) | | | (_| | | |___/ .__/|_| \__,_|_| |_| Fri Nov 22 16:54:53 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 22 16:54:53 UTC 2024 I: sprai from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 16:54:53] INFO: Starting at 2024-11-22 16:54:53.770369 [2024-11-22 16:54:53] INFO: Generating the pages of 1 package(s) [2024-11-22 16:54:54] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/sprai didn't produce a buildlog, even though it has been built. [2024-11-22 16:54:54] INFO: Finished at 2024-11-22 16:54:54.195413, took: 0:00:00.425050 Fri Nov 22 16:54:54 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/sprai.html Fri Nov 22 16:54:54 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 22 16:54:54 UTC 2024 I: Submitting 8.0K b1/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc https://buildinfo.debian.net/5eac724fdcc827c35c5d095f199f00a763e41b91/sprai_0.9.9.23+dfsg1-3_amd64 Fri Nov 22 16:54:55 UTC 2024 I: Submitting 8.0K b2/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc https://buildinfo.debian.net/e2367b74e8f5f04648ae3ca1b411049cbd03dd95/sprai_0.9.9.23+dfsg1-3_amd64 Fri Nov 22 16:54:55 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 22 16:54:55 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 22 16:54:55 UTC 2024 I: Removing signed sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc files: removed './b1/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc' removed './b2/sprai_0.9.9.23+dfsg1-3_amd64.buildinfo.asc' 1732294495 amd64 trixie sprai Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/sprai_0.9.9.23+dfsg1-3.rbuild.log: 72.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/sprai_0.9.9.23+dfsg1-3.rbuild.log.gz [2024-11-22 16:54:56] INFO: Starting at 2024-11-22 16:54:56.268168 [2024-11-22 16:54:56] INFO: Generating the pages of 1 package(s) [2024-11-22 16:54:56] INFO: Finished at 2024-11-22 16:54:56.836601, took: 0:00:00.568441 All cleanup done. Fri Nov 22 16:54:56 UTC 2024 - total duration: 0h 3m 20s. Fri Nov 22 16:54:56 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-IQjkCJKJ, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 23.639s CPU time consumed: 7.076s