Running as unit: rb-build-amd64_10-22741.service ==================================================================================== Tue Nov 12 14:46:24 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_10) on jenkins, called using "ionos5-amd64 ionos1-amd64" as arguments. Tue Nov 12 14:46:24 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-VL0Crwxp" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Nov 12 14:46:24 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Tue Nov 12 14:46:24 UTC 2024 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-gLS5P4' Tue Nov 12 14:46:25 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Tue Nov 12 14:46:25 UTC 2024 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-JAvKRG' ok, let's check if nxtrim is building anywhere yet… ok, nxtrim is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of nxtrim in unstable on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Tue Nov 12 14:46:32 UTC 2024 I: starting to build nxtrim/unstable/amd64 on jenkins on '2024-11-12 14:46' Tue Nov 12 14:46:32 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_10/22741/console.log 1731422792 amd64 unstable nxtrim Tue Nov 12 14:46:32 UTC 2024 I: Downloading source for unstable/nxtrim=0.4.3+dfsg-3 --2024-11-12 14:46:32-- http://deb.debian.org/debian/pool/main/n/nxtrim/nxtrim_0.4.3%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1983 (1.9K) [text/prs.lines.tag] Saving to: ‘nxtrim_0.4.3+dfsg-3.dsc’ 0K . 100% 264M=0s 2024-11-12 14:46:32 (264 MB/s) - ‘nxtrim_0.4.3+dfsg-3.dsc’ saved [1983/1983] --2024-11-12 14:46:32-- http://deb.debian.org/debian/pool/main/n/nxtrim/nxtrim_0.4.3%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1983 (1.9K) [text/prs.lines.tag] Saving to: ‘nxtrim_0.4.3+dfsg-3.dsc’ 0K . 100% 264M=0s 2024-11-12 14:46:32 (264 MB/s) - ‘nxtrim_0.4.3+dfsg-3.dsc’ saved [1983/1983] Tue Nov 12 14:46:32 UTC 2024 I: nxtrim_0.4.3+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: nxtrim Binary: nxtrim Architecture: any Version: 0.4.3+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/sequencing/NxTrim Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/nxtrim Vcs-Git: https://salsa.debian.org/med-team/nxtrim.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: nxtrim deb science optional arch=any Checksums-Sha1: 9a4f27ce5abe719114f9a9309e5e15118ed63c16 65903 nxtrim_0.4.3+dfsg.orig.tar.gz f6fd1e0f3906a1d41550703a2007dcd91eb4e15a 4956 nxtrim_0.4.3+dfsg-3.debian.tar.xz Checksums-Sha256: 3b1fdfc3a7296d0a54a622ecc0be4e9e25b513b762727fb066ad78795d171c04 65903 nxtrim_0.4.3+dfsg.orig.tar.gz 22931ef2727e020675e318316925c55482eaf981c2f3cbd6fb21c5a05b50575e 4956 nxtrim_0.4.3+dfsg-3.debian.tar.xz Files: be88d0019dd82dc1696dfd2d6c185c47 65903 nxtrim_0.4.3+dfsg.orig.tar.gz 13d59407de82767a54cb05f9422d201d 4956 nxtrim_0.4.3+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOgg1URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFttg//Zb1qzrAj6GL61xAcEgO6tvP5mqgyIh62 F2H1w8Zjmkx5l5p5/fH/MOiURdJekPG/tS1pfoLwznxCxbqsb4XMhD3/f+/Xztsz i2GHKDkgqqI688PJb3lv42IabdyI8Et4kQF10McYU//XHtftPwvK8UBwTl9Aztbh 8Zbee4mbU8en624D4ylUsY46JT84nav3bk9K3hX8s1HW6LicL0NBxqjR7hJZqFiJ /vIARj/8vlJO2YRwTY9gSJG6ytpKz7sIiGnMWaRaxnggmDbWVO0xRHL7BWLPlUfo 6escvle98KIdLfjQZDI+fsp2uQ6b6WJ8NA957SByCc2G9a7WP0ln24kL6U+/IVbR XgrZjP6In7fVjQXLl4A3CkaUpDeme1+d1OtG0qMcPUXzltco3JPrS+/613k+uune 8r2q42PRMOqzHUdRn63E1u0jmAyLkDD+Zl09id2Z/fkLrIrvBfTeVV2B/Ie2vVtf 9/eA4quCDwGMPRzcikd2Pk05YbAK96zt0mzOPZuf4rVmP/Jp47gVkAVrWpxtG0Gu 55Gsqd9BcNo6NA2X1Q17bCxWHIpXuZXmF4Gq56Y0t0RqGsgNINUOeLApVi9qzx3a VhhNlbutpyBbj31WD0lAL2xGYrk5sW5qlrINvpPHxDDoevxAFsW6Ft9NcKjpeGjb 0nxQUV+Hg88= =J1t5 -----END PGP SIGNATURE----- Tue Nov 12 14:46:32 UTC 2024 I: Checking whether the package is not for us Tue Nov 12 14:46:32 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue Nov 12 14:46:32 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue Nov 12 14:46:32 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Tue Nov 12 14:46:32 UTC 2024 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-l9tWrH' ==================================================================================== Mon Dec 15 21:09:33 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 nxtrim unstable /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU 0.4.3+dfsg-3" as arguments. Mon Dec 15 21:09:33 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-xl8ogL8c" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Dec 15 21:09:33 UTC 2025 I: Downloading source for unstable/nxtrim=0.4.3+dfsg-3 Reading package lists... NOTICE: 'nxtrim' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nxtrim.git Please use: git clone https://salsa.debian.org/med-team/nxtrim.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 72.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (dsc) [1983 B] Get:2 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (tar) [65.9 kB] Get:3 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (diff) [4956 B] Fetched 72.8 kB in 0s (2410 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'nxtrim' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nxtrim.git Please use: git clone https://salsa.debian.org/med-team/nxtrim.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 72.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (dsc) [1983 B] Get:2 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (tar) [65.9 kB] Get:3 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (diff) [4956 B] Fetched 72.8 kB in 0s (2410 kB/s) Download complete and in download only mode ============================================================================= Building nxtrim in unstable on amd64 on ionos5-amd64 now. Date: Mon Dec 15 21:09:34 UTC 2025 Date UTC: Mon Dec 15 21:09:34 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 15 09:09:34 -12 2025 I: pbuilder-time-stamp: 1765832974 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nxtrim_0.4.3+dfsg-3.dsc] I: copying [./nxtrim_0.4.3+dfsg.orig.tar.gz] I: copying [./nxtrim_0.4.3+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 19 15:29:25 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nxtrim_0.4.3+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting nxtrim in nxtrim-0.4.3+dfsg dpkg-source: info: unpacking nxtrim_0.4.3+dfsg.orig.tar.gz dpkg-source: info: unpacking nxtrim_0.4.3+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do-not-remove-non-existing.patch dpkg-source: info: applying make-script-executable.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3557295/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9e8d6cdefbbd4a3f9e4e92159a56831a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3557295' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/pbuilderrc_ujuW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b1 --logfile b1/build.log nxtrim_0.4.3+dfsg-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3557295/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 20.8 MB of archives. After unpacking 76.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-10 [97.2 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2 [699 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 20.8 MB in 0s (140 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-10_amd64.deb ... Unpacking bsdextrautils (2.40.2-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-10) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nxtrim-0.4.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nxtrim_0.4.3+dfsg-3_source.changes dpkg-buildpackage: info: source package nxtrim dpkg-buildpackage: info: source version 0.4.3+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory rm -f matepair.o fastqlib.o utilityfunc.o nxtrim version.h rm -rf test/output_dir/ rm -f test/*bam test/*pe.fastq.gz test/*mp.fastq.gz test/*unknown.fastq.gz make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o matepair.o matepair.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o fastqlib.o fastqlib.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o utilityfunc.o utilityfunc.cpp echo '#define VERSION "v0.4.3"' > version.h g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection nxtrim.cpp matepair.o fastqlib.o utilityfunc.o -lz -o nxtrim -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' dh_auto_test make -j42 test make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory bash -e example/run_test.sh Output: example/ENA.*.fastq.gz Trimming: R1: example/ENA_R1.fastq.gz R2: example/ENA_R2.fastq.gz Trimming summary: 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 1 remaining reads were trimmed 0 / 1 ( 0.00% ) read pairs had MP orientation 1 / 1 ( 100.00% ) read pairs had PE orientation 0 / 1 ( 0.00% ) read pairs had unknown orientation 0 / 1 ( 0.00% ) were single end reads 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs Output: example/example11.*.fastq.gz Trimming: R1: example/example11_R1.fastq.gz R2: example/example11_R2.fastq.gz WARNING: reads with differing lengths. Has this data already been processed with nxtrim? Trimming summary: 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 1 remaining reads were trimmed 0 / 1 ( 0.00% ) read pairs had MP orientation 0 / 1 ( 0.00% ) read pairs had PE orientation 1 / 1 ( 100.00% ) read pairs had unknown orientation 0 / 1 ( 0.00% ) were single end reads 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs Output: example/EXTERNAL.*.fastq.gz Trimming: R1: example/EXTERNAL_R1.fastq.gz R2: example/EXTERNAL_R2.fastq.gz Trimming summary: 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 1 remaining reads were trimmed 0 / 1 ( 0.00% ) read pairs had MP orientation 1 / 1 ( 100.00% ) read pairs had PE orientation 0 / 1 ( 0.00% ) read pairs had unknown orientation 0 / 1 ( 0.00% ) were single end reads 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs Output: example/FailPF.*.fastq.gz Trimming: R1: example/FailPF_R1.fastq.gz R2: example/FailPF_R2.fastq.gz Trimming summary: 0 / 1 ( 0.00% ) reads passed chastity/purity filters. 0 / 0 ( -nan% ) reads had multiple copies of adapter (filtered). 0 / 0 ( -nan% ) read pairs were ignored because template length appeared less than read length 0 remaining reads were trimmed 0 / 0 ( -nan% ) read pairs had MP orientation 0 / 0 ( -nan% ) read pairs had PE orientation 0 / 0 ( -nan% ) read pairs had unknown orientation 0 / 0 ( -nan% ) were single end reads 0 / 0 ( -nan% ) extra single end reads were generated from overhangs Output: example/MP.*.fastq.gz Trimming: R1: example/MP_R1.fastq.gz R2: example/MP_R2.fastq.gz Trimming summary: 54 / 54 ( 100.00% ) reads passed chastity/purity filters. 0 / 54 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 54 ( 0.00% ) read pairs were ignored because template length appeared less than read length 54 remaining reads were trimmed 54 / 54 ( 100.00% ) read pairs had MP orientation 0 / 54 ( 0.00% ) read pairs had PE orientation 0 / 54 ( 0.00% ) read pairs had unknown orientation 0 / 54 ( 0.00% ) were single end reads 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs Output: example/PE.*.fastq.gz Trimming: R1: example/PE_R1.fastq.gz R2: example/PE_R2.fastq.gz Trimming summary: 55 / 55 ( 100.00% ) reads passed chastity/purity filters. 0 / 55 ( 0.00% ) reads had multiple copies of adapter (filtered). 1 / 55 ( 1.82% ) read pairs were ignored because template length appeared less than read length 54 remaining reads were trimmed 0 / 54 ( 0.00% ) read pairs had MP orientation 54 / 54 ( 100.00% ) read pairs had PE orientation 0 / 54 ( 0.00% ) read pairs had unknown orientation 0 / 54 ( 0.00% ) were single end reads 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs Output: example/sample.*.fastq.gz Trimming: R1: example/sample_R1.fastq.gz R2: example/sample_R2.fastq.gz Trimming summary: 163 / 163 ( 100.00% ) reads passed chastity/purity filters. 0 / 163 ( 0.00% ) reads had multiple copies of adapter (filtered). 1 / 163 ( 0.61% ) read pairs were ignored because template length appeared less than read length 162 remaining reads were trimmed 54 / 162 ( 33.33% ) read pairs had MP orientation 54 / 162 ( 33.33% ) read pairs had PE orientation 54 / 162 ( 33.33% ) read pairs had unknown orientation 0 / 162 ( 0.00% ) were single end reads 0 / 162 ( 0.00% ) extra single end reads were generated from overhangs Output: example/UNKNOWN.*.fastq.gz Trimming: R1: example/UNKNOWN_R1.fastq.gz R2: example/UNKNOWN_R2.fastq.gz Trimming summary: 54 / 54 ( 100.00% ) reads passed chastity/purity filters. 0 / 54 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 54 ( 0.00% ) read pairs were ignored because template length appeared less than read length 54 remaining reads were trimmed 0 / 54 ( 0.00% ) read pairs had MP orientation 0 / 54 ( 0.00% ) read pairs had PE orientation 54 / 54 ( 100.00% ) read pairs had unknown orientation 0 / 54 ( 0.00% ) were single end reads 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/nxtrim/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'nxtrim' in '../nxtrim_0.4.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'nxtrim-dbgsym' in '../nxtrim-dbgsym_0.4.3+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../nxtrim_0.4.3+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../nxtrim_0.4.3+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3557295 and its subdirectories I: Current time: Mon Dec 15 09:10:06 -12 2025 I: pbuilder-time-stamp: 1765833006 Mon Dec 15 21:10:06 UTC 2025 I: Signing ./b1/nxtrim_0.4.3+dfsg-3_amd64.buildinfo as nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc Mon Dec 15 21:10:06 UTC 2025 I: Signed ./b1/nxtrim_0.4.3+dfsg-3_amd64.buildinfo as ./b1/nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc Mon Dec 15 21:10:06 UTC 2025 - build #1 for nxtrim/unstable/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Mon Dec 15 21:10:06 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-xl8ogL8c, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 12 14:47 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 12 14:46 b2 -rw-r--r-- 1 jenkins jenkins 1983 Dec 19 2022 nxtrim_0.4.3+dfsg-3.dsc -rw------- 1 jenkins jenkins 3103 Nov 12 14:46 rbuildlog.YCfvCLD /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b1: total 424 -rw-r--r-- 1 jenkins jenkins 25115 Nov 12 14:47 build.log -rw-r--r-- 1 jenkins jenkins 326888 Nov 12 14:47 nxtrim-dbgsym_0.4.3+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 4956 Nov 12 14:47 nxtrim_0.4.3+dfsg-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1983 Nov 12 14:47 nxtrim_0.4.3+dfsg-3.dsc -rw-r--r-- 1 jenkins jenkins 5019 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5901 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1472 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 37168 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1336 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b2: total 0 Tue Nov 12 14:47:07 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 15 09:09:34 -12 2025 I: pbuilder-time-stamp: 1765832974 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nxtrim_0.4.3+dfsg-3.dsc] I: copying [./nxtrim_0.4.3+dfsg.orig.tar.gz] I: copying [./nxtrim_0.4.3+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 19 15:29:25 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nxtrim_0.4.3+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting nxtrim in nxtrim-0.4.3+dfsg dpkg-source: info: unpacking nxtrim_0.4.3+dfsg.orig.tar.gz dpkg-source: info: unpacking nxtrim_0.4.3+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do-not-remove-non-existing.patch dpkg-source: info: applying make-script-executable.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3557295/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9e8d6cdefbbd4a3f9e4e92159a56831a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3557295' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/pbuilderrc_ujuW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b1 --logfile b1/build.log nxtrim_0.4.3+dfsg-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3557295/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 20.8 MB of archives. After unpacking 76.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-10 [97.2 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2 [699 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 20.8 MB in 0s (140 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-10_amd64.deb ... Unpacking bsdextrautils (2.40.2-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-10) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nxtrim-0.4.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nxtrim_0.4.3+dfsg-3_source.changes dpkg-buildpackage: info: source package nxtrim dpkg-buildpackage: info: source version 0.4.3+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory rm -f matepair.o fastqlib.o utilityfunc.o nxtrim version.h rm -rf test/output_dir/ rm -f test/*bam test/*pe.fastq.gz test/*mp.fastq.gz test/*unknown.fastq.gz make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o matepair.o matepair.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o fastqlib.o fastqlib.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o utilityfunc.o utilityfunc.cpp echo '#define VERSION "v0.4.3"' > version.h g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection nxtrim.cpp matepair.o fastqlib.o utilityfunc.o -lz -o nxtrim -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' dh_auto_test make -j42 test make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory bash -e example/run_test.sh Output: example/ENA.*.fastq.gz Trimming: R1: example/ENA_R1.fastq.gz R2: example/ENA_R2.fastq.gz Trimming summary: 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 1 remaining reads were trimmed 0 / 1 ( 0.00% ) read pairs had MP orientation 1 / 1 ( 100.00% ) read pairs had PE orientation 0 / 1 ( 0.00% ) read pairs had unknown orientation 0 / 1 ( 0.00% ) were single end reads 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs Output: example/example11.*.fastq.gz Trimming: R1: example/example11_R1.fastq.gz R2: example/example11_R2.fastq.gz WARNING: reads with differing lengths. Has this data already been processed with nxtrim? Trimming summary: 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 1 remaining reads were trimmed 0 / 1 ( 0.00% ) read pairs had MP orientation 0 / 1 ( 0.00% ) read pairs had PE orientation 1 / 1 ( 100.00% ) read pairs had unknown orientation 0 / 1 ( 0.00% ) were single end reads 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs Output: example/EXTERNAL.*.fastq.gz Trimming: R1: example/EXTERNAL_R1.fastq.gz R2: example/EXTERNAL_R2.fastq.gz Trimming summary: 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 1 remaining reads were trimmed 0 / 1 ( 0.00% ) read pairs had MP orientation 1 / 1 ( 100.00% ) read pairs had PE orientation 0 / 1 ( 0.00% ) read pairs had unknown orientation 0 / 1 ( 0.00% ) were single end reads 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs Output: example/FailPF.*.fastq.gz Trimming: R1: example/FailPF_R1.fastq.gz R2: example/FailPF_R2.fastq.gz Trimming summary: 0 / 1 ( 0.00% ) reads passed chastity/purity filters. 0 / 0 ( -nan% ) reads had multiple copies of adapter (filtered). 0 / 0 ( -nan% ) read pairs were ignored because template length appeared less than read length 0 remaining reads were trimmed 0 / 0 ( -nan% ) read pairs had MP orientation 0 / 0 ( -nan% ) read pairs had PE orientation 0 / 0 ( -nan% ) read pairs had unknown orientation 0 / 0 ( -nan% ) were single end reads 0 / 0 ( -nan% ) extra single end reads were generated from overhangs Output: example/MP.*.fastq.gz Trimming: R1: example/MP_R1.fastq.gz R2: example/MP_R2.fastq.gz Trimming summary: 54 / 54 ( 100.00% ) reads passed chastity/purity filters. 0 / 54 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 54 ( 0.00% ) read pairs were ignored because template length appeared less than read length 54 remaining reads were trimmed 54 / 54 ( 100.00% ) read pairs had MP orientation 0 / 54 ( 0.00% ) read pairs had PE orientation 0 / 54 ( 0.00% ) read pairs had unknown orientation 0 / 54 ( 0.00% ) were single end reads 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs Output: example/PE.*.fastq.gz Trimming: R1: example/PE_R1.fastq.gz R2: example/PE_R2.fastq.gz Trimming summary: 55 / 55 ( 100.00% ) reads passed chastity/purity filters. 0 / 55 ( 0.00% ) reads had multiple copies of adapter (filtered). 1 / 55 ( 1.82% ) read pairs were ignored because template length appeared less than read length 54 remaining reads were trimmed 0 / 54 ( 0.00% ) read pairs had MP orientation 54 / 54 ( 100.00% ) read pairs had PE orientation 0 / 54 ( 0.00% ) read pairs had unknown orientation 0 / 54 ( 0.00% ) were single end reads 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs Output: example/sample.*.fastq.gz Trimming: R1: example/sample_R1.fastq.gz R2: example/sample_R2.fastq.gz Trimming summary: 163 / 163 ( 100.00% ) reads passed chastity/purity filters. 0 / 163 ( 0.00% ) reads had multiple copies of adapter (filtered). 1 / 163 ( 0.61% ) read pairs were ignored because template length appeared less than read length 162 remaining reads were trimmed 54 / 162 ( 33.33% ) read pairs had MP orientation 54 / 162 ( 33.33% ) read pairs had PE orientation 54 / 162 ( 33.33% ) read pairs had unknown orientation 0 / 162 ( 0.00% ) were single end reads 0 / 162 ( 0.00% ) extra single end reads were generated from overhangs Output: example/UNKNOWN.*.fastq.gz Trimming: R1: example/UNKNOWN_R1.fastq.gz R2: example/UNKNOWN_R2.fastq.gz Trimming summary: 54 / 54 ( 100.00% ) reads passed chastity/purity filters. 0 / 54 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 54 ( 0.00% ) read pairs were ignored because template length appeared less than read length 54 remaining reads were trimmed 0 / 54 ( 0.00% ) read pairs had MP orientation 0 / 54 ( 0.00% ) read pairs had PE orientation 54 / 54 ( 100.00% ) read pairs had unknown orientation 0 / 54 ( 0.00% ) were single end reads 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/nxtrim/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'nxtrim' in '../nxtrim_0.4.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'nxtrim-dbgsym' in '../nxtrim-dbgsym_0.4.3+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../nxtrim_0.4.3+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../nxtrim_0.4.3+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3557295 and its subdirectories I: Current time: Mon Dec 15 09:10:06 -12 2025 I: pbuilder-time-stamp: 1765833006 Tue Nov 12 14:47:10 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Tue Nov 12 14:47:10 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Tue Nov 12 14:47:10 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Tue Nov 12 14:47:10 UTC 2024 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-TmabyW' ==================================================================================== Tue Nov 12 14:47:12 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "2 nxtrim unstable /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU 0.4.3+dfsg-3" as arguments. Tue Nov 12 14:47:12 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Kyn4sbl7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Nov 12 14:47:12 UTC 2024 I: Downloading source for unstable/nxtrim=0.4.3+dfsg-3 Reading package lists... NOTICE: 'nxtrim' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nxtrim.git Please use: git clone https://salsa.debian.org/med-team/nxtrim.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 72.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (dsc) [1983 B] Get:2 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (tar) [65.9 kB] Get:3 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (diff) [4956 B] Fetched 72.8 kB in 0s (1539 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'nxtrim' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nxtrim.git Please use: git clone https://salsa.debian.org/med-team/nxtrim.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 72.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (dsc) [1983 B] Get:2 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (tar) [65.9 kB] Get:3 http://deb.debian.org/debian unstable/main nxtrim 0.4.3+dfsg-3 (diff) [4956 B] Fetched 72.8 kB in 0s (1539 kB/s) Download complete and in download only mode ============================================================================= Re-Building nxtrim in unstable on amd64 on ionos1-amd64 now. Date: Tue Nov 12 14:47:12 UTC 2024 Date UTC: Tue Nov 12 14:47:12 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/pbuilderrc_ZgbA + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' nxtrim = debian-installer -o nxtrim = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' nxtrim = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/pbuilderrc_ZgbA --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b2 --logfile b2/build.log nxtrim_0.4.3+dfsg-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 13 04:47:13 +14 2024 I: pbuilder-time-stamp: 1731422833 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nxtrim_0.4.3+dfsg-3.dsc] I: copying [./nxtrim_0.4.3+dfsg.orig.tar.gz] I: copying [./nxtrim_0.4.3+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 19 15:29:25 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nxtrim_0.4.3+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting nxtrim in nxtrim-0.4.3+dfsg dpkg-source: info: unpacking nxtrim_0.4.3+dfsg.orig.tar.gz dpkg-source: info: unpacking nxtrim_0.4.3+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do-not-remove-non-existing.patch dpkg-source: info: applying make-script-executable.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 12 14:47 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=92ab8f419a3842dcbc77d8dc8c2526df LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3830864 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/pbuilderrc_ZgbA --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b2 --logfile b2/build.log nxtrim_0.4.3+dfsg-3.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 20.8 MB of archives. After unpacking 76.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-10 [97.2 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2 [699 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 20.8 MB in 1s (26.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-10_amd64.deb ... Unpacking bsdextrautils (2.40.2-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-10) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/nxtrim-0.4.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nxtrim_0.4.3+dfsg-3_source.changes dpkg-buildpackage: info: source package nxtrim dpkg-buildpackage: info: source version 0.4.3+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j20 clean make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory rm -f matepair.o fastqlib.o utilityfunc.o nxtrim version.h rm -rf test/output_dir/ rm -f test/*bam test/*pe.fastq.gz test/*mp.fastq.gz test/*unknown.fastq.gz make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o matepair.o matepair.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o fastqlib.o fastqlib.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o utilityfunc.o utilityfunc.cpp echo '#define VERSION "v0.4.3"' > version.h g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection nxtrim.cpp matepair.o fastqlib.o utilityfunc.o -lz -o nxtrim -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' dh_auto_test make -j20 test make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory bash -e example/run_test.sh Output: example/ENA.*.fastq.gz Trimming: R1: example/ENA_R1.fastq.gz R2: example/ENA_R2.fastq.gz Trimming summary: 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 1 remaining reads were trimmed 0 / 1 ( 0.00% ) read pairs had MP orientation 1 / 1 ( 100.00% ) read pairs had PE orientation 0 / 1 ( 0.00% ) read pairs had unknown orientation 0 / 1 ( 0.00% ) were single end reads 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs Output: example/example11.*.fastq.gz Trimming: R1: example/example11_R1.fastq.gz R2: example/example11_R2.fastq.gz WARNING: reads with differing lengths. Has this data already been processed with nxtrim? Trimming summary: 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 1 remaining reads were trimmed 0 / 1 ( 0.00% ) read pairs had MP orientation 0 / 1 ( 0.00% ) read pairs had PE orientation 1 / 1 ( 100.00% ) read pairs had unknown orientation 0 / 1 ( 0.00% ) were single end reads 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs Output: example/EXTERNAL.*.fastq.gz Trimming: R1: example/EXTERNAL_R1.fastq.gz R2: example/EXTERNAL_R2.fastq.gz Trimming summary: 1 / 1 ( 100.00% ) reads passed chastity/purity filters. 0 / 1 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 1 ( 0.00% ) read pairs were ignored because template length appeared less than read length 1 remaining reads were trimmed 0 / 1 ( 0.00% ) read pairs had MP orientation 1 / 1 ( 100.00% ) read pairs had PE orientation 0 / 1 ( 0.00% ) read pairs had unknown orientation 0 / 1 ( 0.00% ) were single end reads 0 / 1 ( 0.00% ) extra single end reads were generated from overhangs Output: example/FailPF.*.fastq.gz Trimming: R1: example/FailPF_R1.fastq.gz R2: example/FailPF_R2.fastq.gz Trimming summary: 0 / 1 ( 0.00% ) reads passed chastity/purity filters. 0 / 0 ( -nan% ) reads had multiple copies of adapter (filtered). 0 / 0 ( -nan% ) read pairs were ignored because template length appeared less than read length 0 remaining reads were trimmed 0 / 0 ( -nan% ) read pairs had MP orientation 0 / 0 ( -nan% ) read pairs had PE orientation 0 / 0 ( -nan% ) read pairs had unknown orientation 0 / 0 ( -nan% ) were single end reads 0 / 0 ( -nan% ) extra single end reads were generated from overhangs Output: example/MP.*.fastq.gz Trimming: R1: example/MP_R1.fastq.gz R2: example/MP_R2.fastq.gz Trimming summary: 54 / 54 ( 100.00% ) reads passed chastity/purity filters. 0 / 54 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 54 ( 0.00% ) read pairs were ignored because template length appeared less than read length 54 remaining reads were trimmed 54 / 54 ( 100.00% ) read pairs had MP orientation 0 / 54 ( 0.00% ) read pairs had PE orientation 0 / 54 ( 0.00% ) read pairs had unknown orientation 0 / 54 ( 0.00% ) were single end reads 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs Output: example/PE.*.fastq.gz Trimming: R1: example/PE_R1.fastq.gz R2: example/PE_R2.fastq.gz Trimming summary: 55 / 55 ( 100.00% ) reads passed chastity/purity filters. 0 / 55 ( 0.00% ) reads had multiple copies of adapter (filtered). 1 / 55 ( 1.82% ) read pairs were ignored because template length appeared less than read length 54 remaining reads were trimmed 0 / 54 ( 0.00% ) read pairs had MP orientation 54 / 54 ( 100.00% ) read pairs had PE orientation 0 / 54 ( 0.00% ) read pairs had unknown orientation 0 / 54 ( 0.00% ) were single end reads 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs Output: example/sample.*.fastq.gz Trimming: R1: example/sample_R1.fastq.gz R2: example/sample_R2.fastq.gz Trimming summary: 163 / 163 ( 100.00% ) reads passed chastity/purity filters. 0 / 163 ( 0.00% ) reads had multiple copies of adapter (filtered). 1 / 163 ( 0.61% ) read pairs were ignored because template length appeared less than read length 162 remaining reads were trimmed 54 / 162 ( 33.33% ) read pairs had MP orientation 54 / 162 ( 33.33% ) read pairs had PE orientation 54 / 162 ( 33.33% ) read pairs had unknown orientation 0 / 162 ( 0.00% ) were single end reads 0 / 162 ( 0.00% ) extra single end reads were generated from overhangs Output: example/UNKNOWN.*.fastq.gz Trimming: R1: example/UNKNOWN_R1.fastq.gz R2: example/UNKNOWN_R2.fastq.gz Trimming summary: 54 / 54 ( 100.00% ) reads passed chastity/purity filters. 0 / 54 ( 0.00% ) reads had multiple copies of adapter (filtered). 0 / 54 ( 0.00% ) read pairs were ignored because template length appeared less than read length 54 remaining reads were trimmed 0 / 54 ( 0.00% ) read pairs had MP orientation 0 / 54 ( 0.00% ) read pairs had PE orientation 54 / 54 ( 100.00% ) read pairs had unknown orientation 0 / 54 ( 0.00% ) were single end reads 0 / 54 ( 0.00% ) extra single end reads were generated from overhangs make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/nxtrim/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'nxtrim' in '../nxtrim_0.4.3+dfsg-3_amd64.deb'. dpkg-deb: building package 'nxtrim-dbgsym' in '../nxtrim-dbgsym_0.4.3+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../nxtrim_0.4.3+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../nxtrim_0.4.3+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3830864 and its subdirectories I: Current time: Wed Nov 13 04:48:53 +14 2024 I: pbuilder-time-stamp: 1731422933 + false + set +x Tue Nov 12 14:48:53 UTC 2024 I: Signing ./b2/nxtrim_0.4.3+dfsg-3_amd64.buildinfo as nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc Tue Nov 12 14:48:53 UTC 2024 I: Signed ./b2/nxtrim_0.4.3+dfsg-3_amd64.buildinfo as ./b2/nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc Tue Nov 12 14:48:53 UTC 2024 - build #2 for nxtrim/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Tue Nov 12 14:48:53 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Kyn4sbl7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU: total 40 drwxr-xr-x 2 jenkins jenkins 4096 Nov 12 14:47 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 12 14:48 b2 -rw-r--r-- 1 jenkins jenkins 1983 Dec 19 2022 nxtrim_0.4.3+dfsg-3.dsc -rw------- 1 jenkins jenkins 28504 Nov 12 14:47 rbuildlog.YCfvCLD /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b1: total 428 -rw-r--r-- 1 jenkins jenkins 25115 Nov 12 14:47 build.log -rw-r--r-- 1 jenkins jenkins 326888 Nov 12 14:47 nxtrim-dbgsym_0.4.3+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 4956 Nov 12 14:47 nxtrim_0.4.3+dfsg-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1983 Nov 12 14:47 nxtrim_0.4.3+dfsg-3.dsc -rw-r--r-- 1 jenkins jenkins 5019 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5901 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1472 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 37168 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1336 Nov 12 14:47 nxtrim_0.4.3+dfsg-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b2: total 424 -rw-r--r-- 1 jenkins jenkins 27035 Nov 12 14:48 build.log -rw-r--r-- 1 jenkins jenkins 326888 Nov 12 14:48 nxtrim-dbgsym_0.4.3+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 4956 Nov 12 14:48 nxtrim_0.4.3+dfsg-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1983 Nov 12 14:48 nxtrim_0.4.3+dfsg-3.dsc -rw-r--r-- 1 jenkins jenkins 5008 Nov 12 14:48 nxtrim_0.4.3+dfsg-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5890 Nov 12 14:48 nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1472 Nov 12 14:48 nxtrim_0.4.3+dfsg-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 37168 Nov 12 14:48 nxtrim_0.4.3+dfsg-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1336 Nov 12 14:48 nxtrim_0.4.3+dfsg-3_source.changes Tue Nov 12 14:48:54 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Tue Nov 12 14:48:55 UTC 2024 I: nxtrim_0.4.3+dfsg-3_amd64.changes: Format: 1.8 Date: Mon, 19 Dec 2022 16:27:49 +0100 Source: nxtrim Binary: nxtrim nxtrim-dbgsym Architecture: amd64 Version: 0.4.3+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: nxtrim - Optimized trimming of Illumina mate pair reads Changes: nxtrim (0.4.3+dfsg-3) unstable; urgency=medium . * Team upload. * Fix watch file * Standards-Version: 4.6.2 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) Checksums-Sha1: 6281587ff19ec8990e696ebba73087865adba129 326888 nxtrim-dbgsym_0.4.3+dfsg-3_amd64.deb 507cb779568190cbeb16f5e9ee67f967eff6c791 5019 nxtrim_0.4.3+dfsg-3_amd64.buildinfo 977c04b2ed9f7385820d3e076fc4cb2de6c18623 37168 nxtrim_0.4.3+dfsg-3_amd64.deb Checksums-Sha256: 081ccc60978970782e4225301a0ac0cb7f6f8d13b99ef240109a4f765c5dbeb9 326888 nxtrim-dbgsym_0.4.3+dfsg-3_amd64.deb 724b727655286e5cd4274d7e5d437de6969d58fed7ca15af2474b844725a21bf 5019 nxtrim_0.4.3+dfsg-3_amd64.buildinfo 407cbe01cd4e5c19b122994056e313dc9fe6466b7ad2725707dcc5ed2038db49 37168 nxtrim_0.4.3+dfsg-3_amd64.deb Files: 5a24aaebce24278b4fd0cb65ae5ff8a6 326888 debug optional nxtrim-dbgsym_0.4.3+dfsg-3_amd64.deb 80c479bc89a291863b88a162682cbbd8 5019 science optional nxtrim_0.4.3+dfsg-3_amd64.buildinfo d32f032d097bb0427ac616bca8838aa6 37168 science optional nxtrim_0.4.3+dfsg-3_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nxtrim_0.4.3+dfsg-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nxtrim_0.4.3+dfsg-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/nxtrim_0.4.3+dfsg-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/nxtrim_0.4.3+dfsg-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/nxtrim_0.4.3+dfsg-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/nxtrim_0.4.3+dfsg-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-12 14:47:07.257923753 +0000 +++ b2/build.log 2024-11-12 14:48:54.506094636 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Dec 15 09:09:34 -12 2025 -I: pbuilder-time-stamp: 1765832974 +I: Current time: Wed Nov 13 04:47:13 +14 2024 +I: pbuilder-time-stamp: 1731422833 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3557295/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 12 14:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='9e8d6cdefbbd4a3f9e4e92159a56831a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3557295' - PS1='# ' - PS2='> ' + INVOCATION_ID=92ab8f419a3842dcbc77d8dc8c2526df + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3830864 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/pbuilderrc_ujuW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b1 --logfile b1/build.log nxtrim_0.4.3+dfsg-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/pbuilderrc_ZgbA --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b2 --logfile b2/build.log nxtrim_0.4.3+dfsg-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3557295/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -143,7 +175,7 @@ Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 20.8 MB in 0s (140 MB/s) +Fetched 20.8 MB in 1s (26.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -278,7 +310,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/nxtrim-0.4.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nxtrim_0.4.3+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/nxtrim-0.4.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nxtrim_0.4.3+dfsg-3_source.changes dpkg-buildpackage: info: source package nxtrim dpkg-buildpackage: info: source version 0.4.3+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -288,7 +324,7 @@ debian/rules clean dh clean dh_auto_clean - make -j42 clean + make -j20 clean make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory rm -f matepair.o fastqlib.o utilityfunc.o nxtrim version.h @@ -302,7 +338,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j42 "INSTALL=install --strip-program=true" + make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o matepair.o matepair.cpp @@ -312,7 +348,7 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection nxtrim.cpp matepair.o fastqlib.o utilityfunc.o -lz -o nxtrim -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' dh_auto_test - make -j42 test + make -j20 test make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg' make[1]: git: No such file or directory bash -e example/run_test.sh @@ -484,12 +520,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3830864/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3557295 and its subdirectories -I: Current time: Mon Dec 15 09:10:06 -12 2025 -I: pbuilder-time-stamp: 1765833006 +I: removing directory /srv/workspace/pbuilder/3830864 and its subdirectories +I: Current time: Wed Nov 13 04:48:53 +14 2024 +I: pbuilder-time-stamp: 1731422933 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/nxtrim_0.4.3+dfsg-3.diff: 67.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/nxtrim_0.4.3+dfsg-3.diff.gz b2/build.log: 76.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 77.5% -- replaced with stdout Tue Nov 12 14:48:56 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_nxtrim_unstable_amd64_1731422936 + touch /var/log/reproducible-builds/diffoscope_stamp_nxtrim_unstable_amd64_1731422936 + RESULT=0 + systemd-run '--description=diffoscope on nxtrim/0.4.3+dfsg-3 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_10-22741 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU --run-session -c jenkins-reproducible-unstable-diffoscope-de5e92da-662f-4fed-9fd6-deb04a183b8b -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/dbd-tmp-1sfo8Np ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/nxtrim_0.4.3+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/nxtrim_0.4.3+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/nxtrim_0.4.3+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b1/nxtrim_0.4.3+dfsg-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b2/nxtrim_0.4.3+dfsg-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_10-22741.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/nxtrim_0.4.3+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/nxtrim_0.4.3+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/nxtrim_0.4.3+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b1/nxtrim_0.4.3+dfsg-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Z6CrmwzU/b2/nxtrim_0.4.3+dfsg-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.395s) 0.395s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 729ms CPU time consumed: 729ms _ _ _ __ __ _| |_ _ __(_)_ __ ___ | '_ \\ \/ / __| '__| | '_ ` _ \ | | | |> <| |_| | | | | | | | | |_| |_/_/\_\\__|_| |_|_| |_| |_| Tue Nov 12 14:48:57 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Nov 12 14:48:57 UTC 2024 I: nxtrim from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-12 14:48:58] INFO: Starting at 2024-11-12 14:48:58.005666 [2024-11-12 14:48:58] INFO: Generating the pages of 1 package(s) [2024-11-12 14:48:58] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/nxtrim didn't produce a buildlog, even though it has been built. [2024-11-12 14:48:58] INFO: Finished at 2024-11-12 14:48:58.435667, took: 0:00:00.430009 Tue Nov 12 14:48:58 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/nxtrim.html Tue Nov 12 14:48:58 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Nov 12 14:48:58 UTC 2024 I: Submitting 8.0K b1/nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc https://buildinfo.debian.net/507cb779568190cbeb16f5e9ee67f967eff6c791/nxtrim_0.4.3+dfsg-3_amd64 Tue Nov 12 14:48:59 UTC 2024 I: Submitting 8.0K b2/nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc https://buildinfo.debian.net/414f0406dc342b06acddac95d31df52d7ad3df0e/nxtrim_0.4.3+dfsg-3_amd64 Tue Nov 12 14:49:00 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Nov 12 14:49:00 UTC 2024 I: Done submitting .buildinfo files. Tue Nov 12 14:49:00 UTC 2024 I: Removing signed nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc files: removed './b1/nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc' removed './b2/nxtrim_0.4.3+dfsg-3_amd64.buildinfo.asc' 1731422940 amd64 unstable nxtrim Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nxtrim_0.4.3+dfsg-3.rbuild.log: 73.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nxtrim_0.4.3+dfsg-3.rbuild.log.gz [2024-11-12 14:49:00] INFO: Starting at 2024-11-12 14:49:00.398885 [2024-11-12 14:49:00] INFO: Generating the pages of 1 package(s) [2024-11-12 14:49:00] INFO: Finished at 2024-11-12 14:49:00.717019, took: 0:00:00.318139 All cleanup done. Tue Nov 12 14:49:00 UTC 2024 - total duration: 0h 2m 33s. Tue Nov 12 14:49:00 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-VL0Crwxp, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 36.204s CPU time consumed: 7.841s