Running as unit: rb-build-amd64_11-71935.service; invocation ID: b8396da8b694418a97baa76041cb596c ==================================================================================== Fri Oct 31 08:51:57 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_11) on jenkins, called using "ionos1-amd64 ionos15-amd64" as arguments. Fri Oct 31 08:51:57 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-NWvgC1bj" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 08:51:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Oct 31 08:51:57 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-GLmWb8' Fri Oct 31 08:51:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 08:51:57 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-6nVt9H' ok, let's check if unifrac is building anywhere yet… ok, unifrac is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of unifrac in forky on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Fri Oct 31 08:52:11 UTC 2025 I: starting to build unifrac/forky/amd64 on jenkins on '2025-10-31 08:51' Fri Oct 31 08:52:11 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_11/71935/console.log 1761900731 amd64 forky unifrac Fri Oct 31 08:52:11 UTC 2025 I: Downloading source for forky/unifrac=1.3-4 --2025-10-31 08:52:11-- http://deb.debian.org/debian/pool/main/u/unifrac/unifrac_1.3-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2198 (2.1K) [text/prs.lines.tag] Saving to: ‘unifrac_1.3-4.dsc’ 0K .. 100% 244M=0s 2025-10-31 08:52:11 (244 MB/s) - ‘unifrac_1.3-4.dsc’ saved [2198/2198] --2025-10-31 08:52:11-- http://deb.debian.org/debian/pool/main/u/unifrac/unifrac_1.3-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2198 (2.1K) [text/prs.lines.tag] Saving to: ‘unifrac_1.3-4.dsc’ 0K .. 100% 244M=0s 2025-10-31 08:52:11 (244 MB/s) - ‘unifrac_1.3-4.dsc’ saved [2198/2198] Fri Oct 31 08:52:11 UTC 2025 I: unifrac_1.3-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unifrac Binary: python3-unifrac Architecture: any Version: 1.3-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biocore/unifrac Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/unifrac Vcs-Git: https://salsa.debian.org/med-team/unifrac.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.6.1) , python3-iow , python3-pytest , libssu-dev (>= 1.4-2~) Package-List: python3-unifrac deb python optional arch=any Checksums-Sha1: ce9c8b95b5567503d21902912ac222f1e7f27b28 65918 unifrac_1.3.orig.tar.gz 27d85d7bcc7f832130aa08308e480a0183c90597 7788 unifrac_1.3-4.debian.tar.xz Checksums-Sha256: e8cc37c3d5aaa31494c218df8a336eae135049d6840023d057da4fda8c4a4377 65918 unifrac_1.3.orig.tar.gz c1d9af94472d48cb50abb4a674097c0f529c4e8e9f163272c01f207118a5e7a8 7788 unifrac_1.3-4.debian.tar.xz Files: 5b9f4c8ff4caf738771a7c467ce6e043 65918 unifrac_1.3.orig.tar.gz 24a5d87829d5112d8cb35d2fadff794e 7788 unifrac_1.3-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbdhUoACgkQPCZ2P2xn 5uI8ng/+PdDeFsgxxR6+mQ4v6lz3c0GRa9QiZ1MU/jXaQvnSQaeXfAesDVRy5C6g klCDBIa4Ta3uBnJwcjINyExwhbLJADYJl0Qk0HUolZOj8QE+Fzi3XcmVZRY7ZyVY xDIMyMlOZkL6MlXMH6O4QOmhjjtf41w35ZCaqgknBzAvrSJiyb5E5MMZ7C4f+ic8 9WDJKCCys4IN++7ZpKdvYsSvye3zHwIfbCmpv6+l/ZLn5R0CAVvoSFzlq9H/eU4N e9mWhh9Nkq9PPc0q+jvjNJlO7dB4RpE3ESFJEuSeQsLy1IJX3ENrHnrt30zld1fw /c4R9ydvZ0ykGN8lwKs6vEtdPlTAX0NQNt5d3Gld4BgXDtrqtQmfqyLEHQCsCDVV tT7vzoBWX69frKs3wanj8WpRkHLvPs90u33B/bWGwIAJVBHI4e2yVvk159Py9Tbl y71G0D75Wu3ECi8tJ97ye5EoDTNx/g/D78cQ/3YY/7XpwpaKKBC7OjBCFuxCYmF6 Y7pKMJs+dSbn/ckHiVbNIaYOZ3dDfGLZIPtzNiTo2ST1QfbmLbnKUEJS9fGagt56 Wg4/cdsaWes2ZuKNsGpfVBxxPkSdeyCMHEaQVUxa4F2h9pZYG4ObeCoMHJKgNKoZ AUSAwNJgI9sTTSSHIec0tO4o0KyOEiOYb1lQ2ZXSEOkN5/eYWE8= =0wsE -----END PGP SIGNATURE----- Fri Oct 31 08:52:11 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 08:52:11 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Oct 31 08:52:11 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Oct 31 08:52:11 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Oct 31 08:52:11 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ubph7K' ==================================================================================== Fri Oct 31 08:52:11 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 unifrac forky /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s 1.3-4" as arguments. Fri Oct 31 08:52:11 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-D4jJFeR0" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 08:52:11 UTC 2025 I: Downloading source for forky/unifrac=1.3-4 Reading package lists... NOTICE: 'unifrac' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unifrac.git Please use: git clone https://salsa.debian.org/med-team/unifrac.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 75.9 kB of source archives. Get:1 http://deb.debian.org/debian forky/main unifrac 1.3-4 (dsc) [2198 B] Get:2 http://deb.debian.org/debian forky/main unifrac 1.3-4 (tar) [65.9 kB] Get:3 http://deb.debian.org/debian forky/main unifrac 1.3-4 (diff) [7788 B] Fetched 75.9 kB in 0s (3488 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'unifrac' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unifrac.git Please use: git clone https://salsa.debian.org/med-team/unifrac.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 75.9 kB of source archives. Get:1 http://deb.debian.org/debian forky/main unifrac 1.3-4 (dsc) [2198 B] Get:2 http://deb.debian.org/debian forky/main unifrac 1.3-4 (tar) [65.9 kB] Get:3 http://deb.debian.org/debian forky/main unifrac 1.3-4 (diff) [7788 B] Fetched 75.9 kB in 0s (3488 kB/s) Download complete and in download only mode ============================================================================= Building unifrac in forky on amd64 on ionos1-amd64 now. Date: Fri Oct 31 08:52:12 UTC 2025 Date UTC: Fri Oct 31 08:52:12 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 20:52:12 -12 2025 I: pbuilder-time-stamp: 1761900732 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unifrac_1.3-4.dsc] I: copying [./unifrac_1.3.orig.tar.gz] I: copying [./unifrac_1.3-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-4.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.3 dpkg-source: info: unpacking unifrac_1.3.orig.tar.gz dpkg-source: info: unpacking unifrac_1.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch dpkg-source: info: applying numpy.patch dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying update_test_api_according_to_skbio.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2257350/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='bda6d236bd944b36874ca6494db391cf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2257350' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/pbuilderrc_fpB7 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b1 --logfile b1/build.log unifrac_1.3-4.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2257350/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.6.1), python3-iow, python3-pytest, libssu-dev (>= 1.4-2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.6.1); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.4-2~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-sphinxdoc{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} liblapacke{a} libldap-dev{a} libldap2{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-ossl-dev{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssu-dev{a} libssu0{a} libssw0{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtmglib3{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-iow{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-bottleneck python3-bs4 python3-colorama python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numba python3-numexpr python3-odf python3-openpyxl python3-pil python3-pooch python3-tables python3-yaml wget 0 packages upgraded, 178 newly installed, 0 to remove and 0 not upgraded. Need to get 103 MB of archives. After unpacking 445 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.3.3+ds-3 [138 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.3.3+ds-3 [5151 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 46 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 hdf5-helpers amd64 1.14.5+repack-4 [26.7 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 60 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get: 69 http://deb.debian.org/debian forky/main amd64 libaec-dev amd64 1.1.4-2 [21.5 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.12.0-1 [95.5 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl-dev amd64 1.16.0-1 [28.4 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.16.0-1 [193 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.24.1-1 [615 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.10-3 [458 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.10-3 [458 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.9-2 [220 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.2-1 [1322 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.10-3 [1431 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.4-1 [2980 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 libcurl4-openssl-dev amd64 8.17.0~rc2-1 [530 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libhdf5-310 amd64 1.14.5+repack-4 [1448 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-4 [146 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-4 [122 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [72.6 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-4 [47.9 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-4 [24.9 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libhdf5-dev amd64 1.14.5+repack-4 [3327 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libtmglib3 amd64 3.12.1-7 [143 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 liblapacke amd64 3.12.1-7 [441 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 133 http://deb.debian.org/debian forky/main amd64 libssu0 amd64 1.4-3+b4 [154 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libssu-dev amd64 1.4-3+b4 [9892 B] Get: 135 http://deb.debian.org/debian forky/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 137 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 140 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 python3-h5py-serial amd64 3.14.0-3 [1157 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 python3-h5py all 3.14.0-3 [18.3 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-4 [31.8 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-2 [4362 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-2 [2935 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 150 http://deb.debian.org/debian forky/main amd64 python3-biom-format amd64 2.1.16-1+b5 [151 kB] Get: 151 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 152 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 python3-hdmedians amd64 0.14.2-6+b1 [121 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 161 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 python3-natsort all 8.4.0-1 [38.9 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 python3-patsy all 1.0.2-1 [173 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 python3-statsmodels-lib amd64 0.14.5+dfsg-1 [1631 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 python3-statsmodels all 0.14.5+dfsg-1 [4827 kB] Get: 171 http://deb.debian.org/debian forky/main amd64 python3-skbio amd64 0.6.3-1 [3772 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 python3-iow amd64 1.0.8-1 [400 kB] Get: 173 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 175 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 176 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 103 MB in 9s (12.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20203 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up python3-numpy (1:2.3.3+ds-3) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-hdmedians (0.14.2-6+b1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-statsmodels-lib:amd64 (0.14.5+dfsg-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up dh-python (6.20250414) ... Setting up libgnutls28-dev:amd64 (3.8.10-3) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (2.1.0-1) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.17.0~rc2-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3.13-dev (3.13.9-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-2) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-pytz (2025.2-4) ... Setting up dh-exec (0.30) ... Setting up python3-patsy (1.0.2-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-pandas (2.3.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... Setting up python3-statsmodels (0.14.5+dfsg-1) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-4) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up libssu0:amd64 (1.4-3+b4) ... Setting up python3-h5py-serial (3.14.0-3) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-openssl-dev:amd64 (8.17.0~rc2-1) ... Setting up python3-h5py (3.14.0-3) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-4) ... Setting up libssu-dev:amd64 (1.4-3+b4) ... Setting up python3-biom-format (2.1.16-1+b5) ... Setting up python3-skbio (0.6.3-1) ... Setting up libhdf5-dev (1.14.5+repack-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-iow (1.0.8-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/unifrac-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../unifrac_1.3-4_source.changes dpkg-buildpackage: info: source package unifrac dpkg-buildpackage: info: source version 1.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build/temp.linux-x86_64-cpython-313/unifrac x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c unifrac/_api.c -o build/temp.linux-x86_64-cpython-313/unifrac/_api.o unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27583:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27583 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/unifrac/_api.o -L/usr/lib/x86_64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-x86_64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build; python3.13 -m pytest --pyargs unifrac ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/unifrac-1.3 plugins: typeguard-4.4.4 collected 49 items unifrac/tests/test_api.py ........................................ [ 81%] unifrac/tests/test_methods.py ......... [100%] =============================== warnings summary =============================== unifrac/__init__.py:9 /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 49 passed, 4 warnings in 21.61s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-unifrac/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_methods.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_meta.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_meta.py to _meta.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_api.py to test_api.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_methods.py to _methods.cpython-313.pyc running install_egg_info running egg_info creating unifrac.egg-info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt writing manifest file 'unifrac.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/unifrac-1.3' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/unifrac-1.3' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_1.3-4_amd64.deb'. dpkg-deb: building package 'python3-unifrac-dbgsym' in '../python3-unifrac-dbgsym_1.3-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../unifrac_1.3-4_amd64.buildinfo dpkg-genchanges --build=binary -O../unifrac_1.3-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2257350 and its subdirectories I: Current time: Thu Oct 30 20:54:57 -12 2025 I: pbuilder-time-stamp: 1761900897 Fri Oct 31 08:54:57 UTC 2025 I: Signing ./b1/unifrac_1.3-4_amd64.buildinfo as unifrac_1.3-4_amd64.buildinfo.asc Fri Oct 31 08:54:57 UTC 2025 I: Signed ./b1/unifrac_1.3-4_amd64.buildinfo as ./b1/unifrac_1.3-4_amd64.buildinfo.asc Fri Oct 31 08:54:57 UTC 2025 - build #1 for unifrac/forky/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 08:54:57 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-D4jJFeR0, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 08:54 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 08:52 b2 -rw------- 1 jenkins jenkins 3282 Oct 31 08:52 rbuildlog.f1D17wk -rw-rw-r-- 1 jenkins jenkins 2198 Sep 8 2024 unifrac_1.3-4.dsc /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b1: total 816 -rw-r--r-- 1 jenkins jenkins 89131 Oct 31 08:54 build.log -rw-r--r-- 1 jenkins jenkins 541456 Oct 31 08:54 python3-unifrac-dbgsym_1.3-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 151768 Oct 31 08:54 python3-unifrac_1.3-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 7788 Oct 31 08:54 unifrac_1.3-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2198 Oct 31 08:54 unifrac_1.3-4.dsc -rw-r--r-- 1 jenkins jenkins 9639 Oct 31 08:54 unifrac_1.3-4_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 10521 Oct 31 08:54 unifrac_1.3-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1596 Oct 31 08:54 unifrac_1.3-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1381 Oct 31 08:54 unifrac_1.3-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b2: total 0 Fri Oct 31 08:54:57 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 20:52:12 -12 2025 I: pbuilder-time-stamp: 1761900732 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unifrac_1.3-4.dsc] I: copying [./unifrac_1.3.orig.tar.gz] I: copying [./unifrac_1.3-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-4.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.3 dpkg-source: info: unpacking unifrac_1.3.orig.tar.gz dpkg-source: info: unpacking unifrac_1.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch dpkg-source: info: applying numpy.patch dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying update_test_api_according_to_skbio.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2257350/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='bda6d236bd944b36874ca6494db391cf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2257350' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/pbuilderrc_fpB7 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b1 --logfile b1/build.log unifrac_1.3-4.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2257350/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.6.1), python3-iow, python3-pytest, libssu-dev (>= 1.4-2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.6.1); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.4-2~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-sphinxdoc{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} liblapacke{a} libldap-dev{a} libldap2{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-ossl-dev{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssu-dev{a} libssu0{a} libssw0{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtmglib3{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-iow{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-bottleneck python3-bs4 python3-colorama python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numba python3-numexpr python3-odf python3-openpyxl python3-pil python3-pooch python3-tables python3-yaml wget 0 packages upgraded, 178 newly installed, 0 to remove and 0 not upgraded. Need to get 103 MB of archives. After unpacking 445 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.3.3+ds-3 [138 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.3.3+ds-3 [5151 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 46 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 hdf5-helpers amd64 1.14.5+repack-4 [26.7 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 60 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get: 69 http://deb.debian.org/debian forky/main amd64 libaec-dev amd64 1.1.4-2 [21.5 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.12.0-1 [95.5 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl-dev amd64 1.16.0-1 [28.4 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.16.0-1 [193 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.24.1-1 [615 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.10-3 [458 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.10-3 [458 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.9-2 [220 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.2-1 [1322 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.10-3 [1431 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.4-1 [2980 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 libcurl4-openssl-dev amd64 8.17.0~rc2-1 [530 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libhdf5-310 amd64 1.14.5+repack-4 [1448 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-4 [146 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-4 [122 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [72.6 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-4 [47.9 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-4 [24.9 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libhdf5-dev amd64 1.14.5+repack-4 [3327 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libtmglib3 amd64 3.12.1-7 [143 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 liblapacke amd64 3.12.1-7 [441 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 133 http://deb.debian.org/debian forky/main amd64 libssu0 amd64 1.4-3+b4 [154 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libssu-dev amd64 1.4-3+b4 [9892 B] Get: 135 http://deb.debian.org/debian forky/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 137 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 140 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 python3-h5py-serial amd64 3.14.0-3 [1157 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 python3-h5py all 3.14.0-3 [18.3 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-4 [31.8 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-2 [4362 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-2 [2935 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 150 http://deb.debian.org/debian forky/main amd64 python3-biom-format amd64 2.1.16-1+b5 [151 kB] Get: 151 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 152 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 python3-hdmedians amd64 0.14.2-6+b1 [121 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 161 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 python3-natsort all 8.4.0-1 [38.9 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 python3-patsy all 1.0.2-1 [173 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 python3-statsmodels-lib amd64 0.14.5+dfsg-1 [1631 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 python3-statsmodels all 0.14.5+dfsg-1 [4827 kB] Get: 171 http://deb.debian.org/debian forky/main amd64 python3-skbio amd64 0.6.3-1 [3772 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 python3-iow amd64 1.0.8-1 [400 kB] Get: 173 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 175 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 176 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 103 MB in 9s (12.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20203 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21218 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:amd64. 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Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-pytz (2025.2-4) ... Setting up dh-exec (0.30) ... Setting up python3-patsy (1.0.2-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-pandas (2.3.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... Setting up python3-statsmodels (0.14.5+dfsg-1) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-4) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up libssu0:amd64 (1.4-3+b4) ... Setting up python3-h5py-serial (3.14.0-3) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-openssl-dev:amd64 (8.17.0~rc2-1) ... Setting up python3-h5py (3.14.0-3) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-4) ... Setting up libssu-dev:amd64 (1.4-3+b4) ... Setting up python3-biom-format (2.1.16-1+b5) ... Setting up python3-skbio (0.6.3-1) ... Setting up libhdf5-dev (1.14.5+repack-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-iow (1.0.8-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/unifrac-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../unifrac_1.3-4_source.changes dpkg-buildpackage: info: source package unifrac dpkg-buildpackage: info: source version 1.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build/temp.linux-x86_64-cpython-313/unifrac x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c unifrac/_api.c -o build/temp.linux-x86_64-cpython-313/unifrac/_api.o unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27583:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27583 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/unifrac/_api.o -L/usr/lib/x86_64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-x86_64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build; python3.13 -m pytest --pyargs unifrac ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/unifrac-1.3 plugins: typeguard-4.4.4 collected 49 items unifrac/tests/test_api.py ........................................ [ 81%] unifrac/tests/test_methods.py ......... [100%] =============================== warnings summary =============================== unifrac/__init__.py:9 /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 49 passed, 4 warnings in 21.61s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-unifrac/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_methods.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_meta.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_meta.py to _meta.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_api.py to test_api.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_methods.py to _methods.cpython-313.pyc running install_egg_info running egg_info creating unifrac.egg-info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt writing manifest file 'unifrac.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/unifrac-1.3' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/unifrac-1.3' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_1.3-4_amd64.deb'. dpkg-deb: building package 'python3-unifrac-dbgsym' in '../python3-unifrac-dbgsym_1.3-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../unifrac_1.3-4_amd64.buildinfo dpkg-genchanges --build=binary -O../unifrac_1.3-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2257350 and its subdirectories I: Current time: Thu Oct 30 20:54:57 -12 2025 I: pbuilder-time-stamp: 1761900897 Fri Oct 31 08:54:57 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri Oct 31 08:54:57 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri Oct 31 08:54:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 08:54:57 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-vS79ly' ==================================================================================== Fri Oct 31 08:54:57 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 unifrac forky /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s 1.3-4" as arguments. Fri Oct 31 08:54:57 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-hCibUhNZ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 08:54:57 UTC 2025 I: Downloading source for forky/unifrac=1.3-4 Reading package lists... NOTICE: 'unifrac' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unifrac.git Please use: git clone https://salsa.debian.org/med-team/unifrac.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 75.9 kB of source archives. Get:1 http://deb.debian.org/debian forky/main unifrac 1.3-4 (dsc) [2198 B] Get:2 http://deb.debian.org/debian forky/main unifrac 1.3-4 (tar) [65.9 kB] Get:3 http://deb.debian.org/debian forky/main unifrac 1.3-4 (diff) [7788 B] Fetched 75.9 kB in 0s (3101 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'unifrac' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unifrac.git Please use: git clone https://salsa.debian.org/med-team/unifrac.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 75.9 kB of source archives. Get:1 http://deb.debian.org/debian forky/main unifrac 1.3-4 (dsc) [2198 B] Get:2 http://deb.debian.org/debian forky/main unifrac 1.3-4 (tar) [65.9 kB] Get:3 http://deb.debian.org/debian forky/main unifrac 1.3-4 (diff) [7788 B] Fetched 75.9 kB in 0s (3101 kB/s) Download complete and in download only mode ============================================================================= Re-Building unifrac in forky on amd64 on ionos15-amd64 now. Date: Fri Oct 31 08:54:58 UTC 2025 Date UTC: Fri Oct 31 08:54:58 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/pbuilderrc_9me8 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' unifrac = debian-installer -o unifrac = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' unifrac = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/pbuilderrc_9me8 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b2 --logfile b2/build.log unifrac_1.3-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 22:54:59 +14 2025 I: pbuilder-time-stamp: 1761900899 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] tar: ./build: time stamp 2026-11-29 07:50:53 is 33987353.074712265 s in the future tar: ./dev/ptmx: time stamp 2026-11-29 07:46:28 is 33987088.074459531 s in the future tar: ./dev/zero: time stamp 2026-11-29 07:46:28 is 33987088.074329487 s in the future tar: ./dev/null: time stamp 2026-11-29 07:46:28 is 33987088.074274429 s in the future tar: ./dev/console: 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./usr/share/locale/zh_TW: time stamp 2026-11-29 07:46:26 is 33987071.369175289 s in the future tar: ./usr/share/locale/kk/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369151897 s in the future tar: ./usr/share/locale/ia/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369113023 s in the future tar: ./usr/share/locale/de/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369072279 s in the future tar: ./usr/share/locale/de: time stamp 2026-11-29 07:46:26 is 33987071.369048774 s in the future tar: ./usr/share/locale/ko/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369023799 s in the future tar: ./usr/share/locale/ko: time stamp 2026-11-29 07:46:26 is 33987071.369001041 s in the future tar: ./usr/share/locale/ro/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368976315 s in the future tar: ./usr/share/locale/ro: time stamp 2026-11-29 07:46:26 is 33987071.368953825 s in the future tar: ./usr/share/locale/lt/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368929561 s in the future tar: ./usr/share/locale/lt: time stamp 2026-11-29 07:46:26 is 33987071.368905834 s in the future tar: ./usr/share/locale/es/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.3688817 s in the future tar: ./usr/share/locale/es: time stamp 2026-11-29 07:46:26 is 33987071.368859055 s in the future tar: ./usr/share/locale/be/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.36883421 s in the future tar: ./usr/share/locale/sv/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368794397 s in the future tar: ./usr/share/locale/sv: time stamp 2026-11-29 07:46:26 is 33987071.368770764 s in the future tar: ./usr/share/locale/hu/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368746245 s in the future tar: ./usr/share/locale/hu: time stamp 2026-11-29 07:46:26 is 33987071.368724196 s in the future tar: ./usr/share/locale/tr/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368698662 s in the future tar: ./usr/share/locale/tr: time stamp 2026-11-29 07:46:26 is 33987071.368676541 s in the future tar: ./usr/share/locale/nb/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368651062 s in the future tar: ./usr/share/locale/nb: time stamp 2026-11-29 07:46:26 is 33987071.368628178 s in the future tar: ./usr/share/locale/et/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368601721 s in the future tar: ./usr/share/locale/et: time stamp 2026-11-29 07:46:26 is 33987071.368579737 s in the future tar: ./usr/share/locale/zh_CN/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368554396 s in the future tar: ./usr/share/locale/zh_CN: time stamp 2026-11-29 07:46:26 is 33987071.368530469 s in the future tar: ./usr/share/locale/nl/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368505086 s in the future tar: ./usr/share/locale/nl: time stamp 2026-11-29 07:46:26 is 33987071.368482288 s in the future tar: ./usr/share/locale/sr/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368456926 s in the future tar: ./usr/share/locale/sr: time stamp 2026-11-29 07:46:26 is 33987071.368434211 s in the future tar: ./usr/share/locale/pt/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368408483 s in the future tar: ./usr/share/locale/pt: time stamp 2026-11-29 07:46:26 is 33987071.368387163 s in the future tar: ./usr/share/locale/uk/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368363109 s in the future tar: ./usr/share/locale/uk: time stamp 2026-11-29 07:46:26 is 33987071.368341044 s in the future tar: ./usr/share/locale/id/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368315964 s in the future tar: ./usr/share/locale/id: time stamp 2026-11-29 07:46:26 is 33987071.368292627 s in the future tar: ./usr/share/locale/fi/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368267664 s in the future tar: ./usr/share/locale/fi: time stamp 2026-11-29 07:46:26 is 33987071.368245516 s in the future tar: ./usr/share/locale/fr/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368220315 s in the future tar: ./usr/share/locale/fr: time stamp 2026-11-29 07:46:26 is 33987071.368198226 s in the future tar: ./usr/share/locale: time stamp 2026-11-29 07:51:38 is 33987383.368176158 s in the future tar: ./usr/share/man/sl/man1: time stamp 2026-11-29 07:46:39 is 33987084.368149225 s in the future tar: ./usr/share/man/cs/man8: time stamp 2026-11-29 07:52:01 is 33987406.368107729 s in the future tar: ./usr/share/man/cs: time stamp 2026-11-29 07:51:34 is 33987379.368083366 s in the future tar: ./usr/share/man/it/man1: time stamp 2026-11-29 07:51:39 is 33987384.368058493 s in the future tar: ./usr/share/man/it/man8: time stamp 2026-11-30 23:31:29 is 34130174.36803292 s in the future tar: ./usr/share/man/it: time stamp 2026-11-29 07:46:27 is 33987072.368009917 s in the future tar: ./usr/share/man/ja/man1: time stamp 2026-11-29 07:51:34 is 33987379.367984665 s in the future tar: ./usr/share/man/ja/man8: time stamp 2026-11-30 23:31:29 is 34130174.367960142 s in the future tar: ./usr/share/man/ja: time stamp 2026-11-29 07:46:27 is 33987072.367938231 s in the future tar: ./usr/share/man/gl/man8: time stamp 2026-11-29 07:52:01 is 33987406.367915699 s in the future tar: ./usr/share/man/gl: time stamp 2026-11-29 07:51:39 is 33987384.367893841 s in the future tar: ./usr/share/man/pl/man1: time stamp 2026-11-29 07:51:34 is 33987379.367869253 s in the future tar: ./usr/share/man/pl/man8: time stamp 2026-11-30 23:31:29 is 34130174.367844256 s in the future tar: ./usr/share/man/pl: time stamp 2026-11-29 07:46:27 is 33987072.367804106 s in the future tar: ./usr/share/man/man1: time stamp 2026-12-02 23:31:24 is 34302969.367777228 s in the future tar: ./usr/share/man/man8: time stamp 2026-12-02 20:29:29 is 34292054.367752303 s in the future tar: ./usr/share/man/de/man1: time stamp 2026-11-30 23:31:29 is 34130174.367725447 s in the future tar: ./usr/share/man/de/man8: time stamp 2026-11-30 23:31:29 is 34130174.367700665 s in the future tar: ./usr/share/man/de: time stamp 2026-11-29 07:46:41 is 33987086.367679034 s in the future tar: ./usr/share/man/es/man1: time stamp 2026-11-29 07:52:00 is 33987405.367653208 s in the future tar: ./usr/share/man/es/man8: time stamp 2026-11-30 23:31:29 is 34130174.367627641 s in the future tar: ./usr/share/man/es: time stamp 2026-11-29 07:46:27 is 33987072.367604963 s in the future tar: ./usr/share/man/sv/man1: time stamp 2026-11-29 07:52:00 is 33987405.367578324 s in the future tar: ./usr/share/man/sv: time stamp 2026-11-29 07:46:47 is 33987092.367552959 s in the future tar: ./usr/share/man/man7: time stamp 2026-11-30 23:31:29 is 34130174.367526837 s in the future tar: ./usr/share/man/fi/man8: time stamp 2026-11-29 07:52:01 is 33987406.367503762 s in the future tar: ./usr/share/man/fi: time stamp 2026-11-29 07:51:39 is 33987384.367481395 s in the future tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 23:31:29 is 34130174.367454982 s in the future tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 23:31:29 is 34130174.367430032 s in the future tar: ./usr/share/man/fr: time stamp 2026-11-29 07:46:41 is 33987086.367405879 s in the future tar: ./usr/share/man: time stamp 2026-11-29 07:51:39 is 33987384.367383812 s in the future tar: ./usr/share: time stamp 2026-11-29 07:51:42 is 33987387.367359684 s in the future tar: ./usr: time stamp 2026-11-29 07:46:28 is 33987073.367339986 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 07:50:27 is 33987312.367300309 s in the future tar: ./etc/systemd/system: time stamp 2026-11-29 07:46:29 is 33987074.367277165 s in the future tar: ./etc/alternatives: time stamp 2026-11-29 07:52:01 is 33987406.367238183 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unifrac_1.3-4.dsc] I: copying [./unifrac_1.3.orig.tar.gz] I: copying [./unifrac_1.3-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-4.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.3 dpkg-source: info: unpacking unifrac_1.3.orig.tar.gz dpkg-source: info: unpacking unifrac_1.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch dpkg-source: info: applying numpy.patch dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying update_test_api_according_to_skbio.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 08:55 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=a5c3daa69a92488aad00fd10a49e2d07 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1200642 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/pbuilderrc_9me8 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b2 --logfile b2/build.log unifrac_1.3-4.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.6.1), python3-iow, python3-pytest, libssu-dev (>= 1.4-2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.6.1); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.4-2~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-sphinxdoc{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} liblapacke{a} libldap-dev{a} libldap2{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-ossl-dev{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssu-dev{a} libssu0{a} libssw0{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtmglib3{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-iow{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-bottleneck python3-bs4 python3-colorama python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numba python3-numexpr python3-odf python3-openpyxl python3-pil python3-pooch python3-tables python3-yaml wget 0 packages upgraded, 178 newly installed, 0 to remove and 0 not upgraded. Need to get 103 MB of archives. After unpacking 445 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.3.3+ds-3 [138 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.3.3+ds-3 [5151 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 46 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 hdf5-helpers amd64 1.14.5+repack-4 [26.7 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 60 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get: 69 http://deb.debian.org/debian forky/main amd64 libaec-dev amd64 1.1.4-2 [21.5 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.12.0-1 [95.5 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl-dev amd64 1.16.0-1 [28.4 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.16.0-1 [193 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.24.1-1 [615 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.10-3 [458 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.10-3 [458 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.9-2 [220 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.2-1 [1322 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.10-3 [1431 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.4-1 [2980 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 libcurl4-openssl-dev amd64 8.17.0~rc2-1 [530 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libhdf5-310 amd64 1.14.5+repack-4 [1448 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-4 [146 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-4 [122 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [72.6 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-4 [47.9 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-4 [24.9 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libhdf5-dev amd64 1.14.5+repack-4 [3327 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libtmglib3 amd64 3.12.1-7 [143 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 liblapacke amd64 3.12.1-7 [441 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 133 http://deb.debian.org/debian forky/main amd64 libssu0 amd64 1.4-3+b4 [154 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libssu-dev amd64 1.4-3+b4 [9892 B] Get: 135 http://deb.debian.org/debian forky/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 137 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 140 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 python3-h5py-serial amd64 3.14.0-3 [1157 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 python3-h5py all 3.14.0-3 [18.3 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-4 [31.8 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-2 [4362 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-2 [2935 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1.1 [17.0 MB] Get: 150 http://deb.debian.org/debian forky/main amd64 python3-biom-format amd64 2.1.16-1+b5 [151 kB] Get: 151 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 152 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 python3-hdmedians amd64 0.14.2-6+b1 [121 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 161 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 python3-natsort all 8.4.0-1 [38.9 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 python3-patsy all 1.0.2-1 [173 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 python3-statsmodels-lib amd64 0.14.5+dfsg-1 [1631 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 python3-statsmodels all 0.14.5+dfsg-1 [4827 kB] Get: 171 http://deb.debian.org/debian forky/main amd64 python3-skbio amd64 0.6.3-1 [3772 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 python3-iow amd64 1.0.8-1 [400 kB] Get: 173 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 175 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 176 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 103 MB in 2s (46.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21218 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:amd64. 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Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../032-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../033-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../034-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../035-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../036-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../037-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../038-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../039-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package dh-exec. Preparing to unpack .../040-dh-exec_0.30_amd64.deb ... Unpacking dh-exec (0.30) ... Selecting previously unselected package dh-python. Preparing to unpack .../041-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../042-hdf5-helpers_1.14.5+repack-4_amd64.deb ... Unpacking hdf5-helpers (1.14.5+repack-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../043-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../044-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../045-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../046-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../047-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../048-libgssrpc4t64_1.21.3-5_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../049-libkadm5clnt-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../050-libkdb5-10t64_1.21.3-5_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../051-libkadm5srv-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../052-krb5-multidev_1.21.3-5_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-5) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../053-libaec0_1.1.4-2_amd64.deb ... Unpacking libaec0:amd64 (1.1.4-2) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../054-libsz2_1.1.4-2_amd64.deb ... Unpacking libsz2:amd64 (1.1.4-2) ... Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../055-libaec-dev_1.1.4-2_amd64.deb ... Unpacking libaec-dev:amd64 (1.1.4-2) ... 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Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/unifrac-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../unifrac_1.3-4_source.changes dpkg-buildpackage: info: source package unifrac dpkg-buildpackage: info: source version 1.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build/temp.linux-x86_64-cpython-313/unifrac x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c unifrac/_api.c -o build/temp.linux-x86_64-cpython-313/unifrac/_api.o unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27583:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27583 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/unifrac/_api.o -L/usr/lib/x86_64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-x86_64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build; python3.13 -m pytest --pyargs unifrac ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/unifrac-1.3 plugins: typeguard-4.4.4 collected 49 items unifrac/tests/test_api.py ........................................ [ 81%] unifrac/tests/test_methods.py ......... [100%] =============================== warnings summary =============================== unifrac/__init__.py:9 /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 49 passed, 4 warnings in 15.69s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-unifrac/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_methods.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_meta.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_meta.py to _meta.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_methods.py to _methods.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_api.py to test_api.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating unifrac.egg-info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt writing manifest file 'unifrac.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/unifrac-1.3' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/unifrac-1.3' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-unifrac-dbgsym' in '../python3-unifrac-dbgsym_1.3-4_amd64.deb'. dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_1.3-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../unifrac_1.3-4_amd64.buildinfo dpkg-genchanges --build=binary -O../unifrac_1.3-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1200642 and its subdirectories I: Current time: Fri Oct 31 22:58:39 +14 2025 I: pbuilder-time-stamp: 1761901119 + false + set +x Fri Oct 31 08:58:39 UTC 2025 I: Signing ./b2/unifrac_1.3-4_amd64.buildinfo as unifrac_1.3-4_amd64.buildinfo.asc Fri Oct 31 08:58:39 UTC 2025 I: Signed ./b2/unifrac_1.3-4_amd64.buildinfo as ./b2/unifrac_1.3-4_amd64.buildinfo.asc Fri Oct 31 08:58:39 UTC 2025 - build #2 for unifrac/forky/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 08:58:39 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hCibUhNZ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s: total 108 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 08:54 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 08:58 b2 -rw------- 1 jenkins jenkins 92701 Oct 31 08:54 rbuildlog.f1D17wk -rw-rw-r-- 1 jenkins jenkins 2198 Sep 8 2024 unifrac_1.3-4.dsc /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b1: total 828 -rw-r--r-- 1 jenkins jenkins 89131 Oct 31 08:54 build.log -rw-r--r-- 1 jenkins jenkins 541456 Oct 31 08:54 python3-unifrac-dbgsym_1.3-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 151768 Oct 31 08:54 python3-unifrac_1.3-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 7788 Oct 31 08:54 unifrac_1.3-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2198 Oct 31 08:54 unifrac_1.3-4.dsc -rw-r--r-- 1 jenkins jenkins 9639 Oct 31 08:54 unifrac_1.3-4_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 10521 Oct 31 08:54 unifrac_1.3-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1596 Oct 31 08:54 unifrac_1.3-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1381 Oct 31 08:54 unifrac_1.3-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b2: total 1088 -rw-rw-r-- 1 jenkins jenkins 365041 Oct 31 08:58 build.log -rw-r--r-- 1 jenkins jenkins 541456 Oct 31 08:58 python3-unifrac-dbgsym_1.3-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 151768 Oct 31 08:58 python3-unifrac_1.3-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 7788 Oct 31 08:58 unifrac_1.3-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2198 Oct 31 08:58 unifrac_1.3-4.dsc -rw-rw-r-- 1 jenkins jenkins 9639 Oct 31 08:58 unifrac_1.3-4_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 10521 Oct 31 08:58 unifrac_1.3-4_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1596 Oct 31 08:58 unifrac_1.3-4_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1381 Oct 31 08:58 unifrac_1.3-4_source.changes Fri Oct 31 08:58:42 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri Oct 31 08:58:42 UTC 2025 I: unifrac_1.3-4_amd64.changes: Format: 1.8 Date: Sun, 08 Sep 2024 12:56:59 +0200 Source: unifrac Binary: python3-unifrac python3-unifrac-dbgsym Architecture: amd64 Version: 1.3-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python3-unifrac - high-performance phylogenetic diversity calculations Closes: 1075607 Changes: unifrac (1.3-4) unstable; urgency=medium . * Team upload. * d/rules: add workaround for https://bugs.debian.org/1077205. Closes: #1075607 * d/rules: move cleanup to d/clean * Switch to pytest, and using pybuild-autopkgtest * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: af552e39badc5dcad2b6c8de669d60f65a0986d3 541456 python3-unifrac-dbgsym_1.3-4_amd64.deb 529d1da8a33d090eb4e777683d182ee026bff518 151768 python3-unifrac_1.3-4_amd64.deb 10cd8e9e502cd18593074152e7ce786b6b5dbc21 9639 unifrac_1.3-4_amd64.buildinfo Checksums-Sha256: 5bcd45858ba6600d9e347580b8e7ae4ed173cd192c2e00283f0d3058ec411d56 541456 python3-unifrac-dbgsym_1.3-4_amd64.deb 1307f64aa8c0cfbb5ca40e5f685e255d89d16724a7a36d31195f343d6325bbe7 151768 python3-unifrac_1.3-4_amd64.deb db8c1382799d9f34f43f75ad7e816f44fcf577db3715fd15d045ef68827d2f3c 9639 unifrac_1.3-4_amd64.buildinfo Files: c94864cc2c627b3f9d7d90b447a7b29e 541456 debug optional python3-unifrac-dbgsym_1.3-4_amd64.deb e88bb814da9ab3fc623973635818ed4d 151768 python optional python3-unifrac_1.3-4_amd64.deb 688c412cb4644b6733d0fc8649913dcd 9639 science optional unifrac_1.3-4_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/unifrac_1.3-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/unifrac_1.3-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/unifrac_1.3-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/unifrac_1.3-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/unifrac_1.3-4_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/unifrac_1.3-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 08:54:57.686128544 +0000 +++ b2/build.log 2025-10-31 08:58:42.334388495 +0000 @@ -1,8 +1,2550 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 20:52:12 -12 2025 -I: pbuilder-time-stamp: 1761900732 +I: Current time: Fri Oct 31 22:54:59 +14 2025 +I: pbuilder-time-stamp: 1761900899 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] +tar: ./build: time stamp 2026-11-29 07:50:53 is 33987353.074712265 s in the future +tar: ./dev/ptmx: time stamp 2026-11-29 07:46:28 is 33987088.074459531 s in the future +tar: ./dev/zero: time stamp 2026-11-29 07:46:28 is 33987088.074329487 s in the future +tar: ./dev/null: time stamp 2026-11-29 07:46:28 is 33987088.074274429 s in the future +tar: ./dev/console: time stamp 2026-11-29 07:46:28 is 33987088.074197643 s in the future +tar: ./dev/random: time stamp 2026-11-29 07:46:28 is 33987088.074151665 s in the future +tar: ./dev/full: time stamp 2026-11-29 07:46:28 is 33987088.074108082 s in the future +tar: ./dev/pts: time stamp 2026-11-29 07:46:28 is 33987088.07403148 s in the future +tar: ./dev/tty: time stamp 2026-11-29 07:46:28 is 33987088.073937331 s in the future +tar: ./dev/urandom: time stamp 2026-11-29 07:46:28 is 33987088.073883821 s in the future +tar: ./etc/terminfo: time stamp 2026-11-29 07:46:38 is 33987098.073571377 s in the future +tar: ./etc/opt: time stamp 2026-11-29 07:46:28 is 33987088.072018757 s in the future +tar: ./etc/security/opasswd: time stamp 2026-11-29 07:46:40 is 33987100.071626253 s in the future +tar: ./etc/security: time stamp 2026-11-29 07:46:40 is 33987100.071258112 s in the future +tar: ./etc/shadow: time stamp 2026-11-29 07:51:36 is 33987396.071031535 s in the future +tar: ./etc/cron.daily: time stamp 2026-11-30 23:31:29 is 34130189.070817591 s in the future +tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2026-11-29 07:52:40 is 33987460.070575703 s in the future +tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2026-11-29 07:50:53 is 33987353.070510006 s in the future +tar: ./etc/apt/apt.conf.d: time stamp 2026-11-30 23:31:29 is 34130189.070404031 s in the future +tar: ./etc/apt/sources.list: time stamp 2026-11-29 07:52:40 is 33987460.070297387 s in the future +tar: ./etc/apt/trusted.gpg.d: time stamp 2026-11-29 07:50:07 is 33987307.069707732 s in the future +tar: ./etc/apt: time stamp 2026-11-29 07:52:40 is 33987460.069617953 s in the future +tar: ./etc/fstab: time stamp 2026-11-29 07:46:28 is 33987088.069562326 s in the future +tar: ./etc/update-motd.d: time stamp 2026-11-29 07:46:39 is 33987099.069025353 s in the future +tar: ./etc/ld.so.conf.d: time stamp 2026-11-29 07:52:00 is 33987420.068756633 s in the future +tar: ./etc/gshadow: time stamp 2026-11-29 07:51:36 is 33987396.068629013 s in the future +tar: ./etc/shells: time stamp 2026-11-29 07:46:39 is 33987099.068569467 s in the future +tar: ./etc/default: time stamp 2026-11-29 07:51:35 is 33987395.068307886 s in the future +tar: ./etc/group: time stamp 2026-11-29 07:51:36 is 33987396.068235709 s in the future +tar: ./etc/ld.so.cache: time stamp 2026-12-02 23:31:27 is 34302987.068104402 s in the future +tar: ./etc/.pwd.lock: time stamp 2026-11-29 07:51:36 is 33987396.067992807 s in the future +tar: ./etc/skel: time stamp 2026-11-29 07:46:39 is 33987099.06778631 s in the future +tar: ./etc/group-: time stamp 2026-11-29 07:46:28 is 33987088.067708834 s in the future +tar: ./etc/subuid: time stamp 2026-11-29 07:46:28 is 33987088.067674069 s in the future +tar: ./etc/logrotate.d: time stamp 2026-11-30 23:31:29 is 34130189.06714584 s in the future +tar: ./etc/pam.d/common-session: time stamp 2026-11-29 07:46:40 is 33987100.067002442 s in the future +tar: ./etc/pam.d/common-password: time stamp 2026-11-29 07:46:40 is 33987100.066901845 s in the future +tar: ./etc/pam.d/common-account: time stamp 2026-11-29 07:46:40 is 33987100.06679794 s in the future +tar: ./etc/pam.d/common-session-noninteractive: time stamp 2026-11-29 07:46:40 is 33987100.066729816 s in the future +tar: ./etc/pam.d/common-auth: time stamp 2026-11-29 07:46:40 is 33987100.066664719 s in the future +tar: ./etc/pam.d: time stamp 2026-12-02 20:29:29 is 34292069.066479679 s in the future +tar: ./etc/subgid: time stamp 2026-11-29 07:46:28 is 33987088.066413672 s in the future +tar: ./etc/passwd-: time stamp 2026-11-29 07:46:28 is 33987088.066354322 s in the future +tar: ./etc/environment: time stamp 2026-11-29 07:46:40 is 33987100.066254624 s in the future +tar: ./etc/perl/Net: time stamp 2026-11-29 07:50:24 is 33987324.066102793 s in the future +tar: ./etc/perl: time stamp 2026-11-29 07:50:02 is 33987302.06607971 s in the future +tar: ./etc/selinux: time stamp 2026-11-29 07:51:27 is 33987387.065921222 s in the future +tar: ./etc/kernel: time stamp 2026-11-29 07:46:41 is 33987101.0658354 s in the future +tar: ./etc/passwd: time stamp 2026-11-29 07:51:36 is 33987396.065795744 s in the future +tar: ./etc/dpkg/origins/default: time stamp 2026-11-29 07:46:28 is 33987088.065673814 s in the future +tar: ./etc/dpkg/origins: time stamp 2026-11-29 07:46:39 is 33987099.065623441 s in the future +tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2026-11-29 07:52:40 is 33987460.065419064 s in the 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2026-11-29 07:46:26 is 33987071.369725225 s in the future +tar: ./usr/share/locale/ms/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369702188 s in the future +tar: ./usr/share/locale/bg/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.36966251 s in the future +tar: ./usr/share/locale/bg: time stamp 2026-11-29 07:46:26 is 33987071.369633919 s in the future +tar: ./usr/share/locale/lg/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369608801 s in the future +tar: ./usr/share/locale/it/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.36956746 s in the future +tar: ./usr/share/locale/it: time stamp 2026-11-29 07:46:26 is 33987071.369544454 s in the future +tar: ./usr/share/locale/ja/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369519104 s in the future +tar: ./usr/share/locale/ja: time stamp 2026-11-29 07:46:26 is 33987071.369496785 s in the future +tar: ./usr/share/locale/sk/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369471811 s in the future +tar: 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in the future +tar: ./usr/share/locale/zh_TW/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369197919 s in the future +tar: ./usr/share/locale/zh_TW: time stamp 2026-11-29 07:46:26 is 33987071.369175289 s in the future +tar: ./usr/share/locale/kk/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369151897 s in the future +tar: ./usr/share/locale/ia/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369113023 s in the future +tar: ./usr/share/locale/de/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369072279 s in the future +tar: ./usr/share/locale/de: time stamp 2026-11-29 07:46:26 is 33987071.369048774 s in the future +tar: ./usr/share/locale/ko/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.369023799 s in the future +tar: ./usr/share/locale/ko: time stamp 2026-11-29 07:46:26 is 33987071.369001041 s in the future +tar: ./usr/share/locale/ro/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368976315 s in the future +tar: ./usr/share/locale/ro: time stamp 2026-11-29 07:46:26 is 33987071.368953825 s in the future +tar: ./usr/share/locale/lt/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368929561 s in the future +tar: ./usr/share/locale/lt: time stamp 2026-11-29 07:46:26 is 33987071.368905834 s in the future +tar: ./usr/share/locale/es/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.3688817 s in the future +tar: ./usr/share/locale/es: time stamp 2026-11-29 07:46:26 is 33987071.368859055 s in the future +tar: ./usr/share/locale/be/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.36883421 s in the future +tar: ./usr/share/locale/sv/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368794397 s in the future +tar: ./usr/share/locale/sv: time stamp 2026-11-29 07:46:26 is 33987071.368770764 s in the future +tar: ./usr/share/locale/hu/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368746245 s in the future +tar: ./usr/share/locale/hu: time stamp 2026-11-29 07:46:26 is 33987071.368724196 s in the future +tar: ./usr/share/locale/tr/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368698662 s in the future +tar: ./usr/share/locale/tr: time stamp 2026-11-29 07:46:26 is 33987071.368676541 s in the future +tar: ./usr/share/locale/nb/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368651062 s in the future +tar: ./usr/share/locale/nb: time stamp 2026-11-29 07:46:26 is 33987071.368628178 s in the future +tar: ./usr/share/locale/et/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368601721 s in the future +tar: ./usr/share/locale/et: time stamp 2026-11-29 07:46:26 is 33987071.368579737 s in the future +tar: ./usr/share/locale/zh_CN/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368554396 s in the future +tar: ./usr/share/locale/zh_CN: time stamp 2026-11-29 07:46:26 is 33987071.368530469 s in the future +tar: ./usr/share/locale/nl/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368505086 s in the future +tar: ./usr/share/locale/nl: time stamp 2026-11-29 07:46:26 is 33987071.368482288 s in the future +tar: ./usr/share/locale/sr/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368456926 s in the future +tar: ./usr/share/locale/sr: time stamp 2026-11-29 07:46:26 is 33987071.368434211 s in the future +tar: ./usr/share/locale/pt/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368408483 s in the future +tar: ./usr/share/locale/pt: time stamp 2026-11-29 07:46:26 is 33987071.368387163 s in the future +tar: ./usr/share/locale/uk/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368363109 s in the future +tar: ./usr/share/locale/uk: time stamp 2026-11-29 07:46:26 is 33987071.368341044 s in the future +tar: ./usr/share/locale/id/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368315964 s in the future +tar: ./usr/share/locale/id: time stamp 2026-11-29 07:46:26 is 33987071.368292627 s in the future +tar: ./usr/share/locale/fi/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368267664 s in the future +tar: ./usr/share/locale/fi: time stamp 2026-11-29 07:46:26 is 33987071.368245516 s in the future +tar: ./usr/share/locale/fr/LC_TIME: time stamp 2026-11-29 07:46:31 is 33987076.368220315 s in the future +tar: ./usr/share/locale/fr: time stamp 2026-11-29 07:46:26 is 33987071.368198226 s in the future +tar: ./usr/share/locale: time stamp 2026-11-29 07:51:38 is 33987383.368176158 s in the future +tar: ./usr/share/man/sl/man1: time stamp 2026-11-29 07:46:39 is 33987084.368149225 s in the future +tar: ./usr/share/man/cs/man8: time stamp 2026-11-29 07:52:01 is 33987406.368107729 s in the future +tar: ./usr/share/man/cs: time stamp 2026-11-29 07:51:34 is 33987379.368083366 s in the future +tar: ./usr/share/man/it/man1: time stamp 2026-11-29 07:51:39 is 33987384.368058493 s in the future +tar: ./usr/share/man/it/man8: time stamp 2026-11-30 23:31:29 is 34130174.36803292 s in the future +tar: ./usr/share/man/it: time stamp 2026-11-29 07:46:27 is 33987072.368009917 s in the future +tar: ./usr/share/man/ja/man1: time stamp 2026-11-29 07:51:34 is 33987379.367984665 s in the future +tar: ./usr/share/man/ja/man8: time stamp 2026-11-30 23:31:29 is 34130174.367960142 s in the future +tar: ./usr/share/man/ja: time stamp 2026-11-29 07:46:27 is 33987072.367938231 s in the future +tar: ./usr/share/man/gl/man8: time stamp 2026-11-29 07:52:01 is 33987406.367915699 s in the future +tar: ./usr/share/man/gl: time stamp 2026-11-29 07:51:39 is 33987384.367893841 s in the future +tar: ./usr/share/man/pl/man1: time stamp 2026-11-29 07:51:34 is 33987379.367869253 s in the future +tar: ./usr/share/man/pl/man8: time stamp 2026-11-30 23:31:29 is 34130174.367844256 s in the future +tar: ./usr/share/man/pl: time stamp 2026-11-29 07:46:27 is 33987072.367804106 s in the future +tar: ./usr/share/man/man1: time stamp 2026-12-02 23:31:24 is 34302969.367777228 s in the future +tar: ./usr/share/man/man8: time stamp 2026-12-02 20:29:29 is 34292054.367752303 s in the future +tar: ./usr/share/man/de/man1: time stamp 2026-11-30 23:31:29 is 34130174.367725447 s in the future +tar: ./usr/share/man/de/man8: time stamp 2026-11-30 23:31:29 is 34130174.367700665 s in the future +tar: ./usr/share/man/de: time stamp 2026-11-29 07:46:41 is 33987086.367679034 s in the future +tar: ./usr/share/man/es/man1: time stamp 2026-11-29 07:52:00 is 33987405.367653208 s in the future +tar: ./usr/share/man/es/man8: time stamp 2026-11-30 23:31:29 is 34130174.367627641 s in the future +tar: ./usr/share/man/es: time stamp 2026-11-29 07:46:27 is 33987072.367604963 s in the future +tar: ./usr/share/man/sv/man1: time stamp 2026-11-29 07:52:00 is 33987405.367578324 s in the future +tar: ./usr/share/man/sv: time stamp 2026-11-29 07:46:47 is 33987092.367552959 s in the future +tar: ./usr/share/man/man7: time stamp 2026-11-30 23:31:29 is 34130174.367526837 s in the future +tar: ./usr/share/man/fi/man8: time stamp 2026-11-29 07:52:01 is 33987406.367503762 s in the future +tar: ./usr/share/man/fi: time stamp 2026-11-29 07:51:39 is 33987384.367481395 s in the future +tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 23:31:29 is 34130174.367454982 s in the future +tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 23:31:29 is 34130174.367430032 s in the future +tar: ./usr/share/man/fr: time stamp 2026-11-29 07:46:41 is 33987086.367405879 s in the future +tar: ./usr/share/man: time stamp 2026-11-29 07:51:39 is 33987384.367383812 s in the future +tar: ./usr/share: time stamp 2026-11-29 07:51:42 is 33987387.367359684 s in the future +tar: ./usr: time stamp 2026-11-29 07:46:28 is 33987073.367339986 s in the future +tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 07:50:27 is 33987312.367300309 s in the future +tar: ./etc/systemd/system: time stamp 2026-11-29 07:46:29 is 33987074.367277165 s in the future +tar: ./etc/alternatives: time stamp 2026-11-29 07:52:01 is 33987406.367238183 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -29,53 +2571,85 @@ dpkg-source: info: applying update_test_api_according_to_skbio.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2257350/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 08:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='bda6d236bd944b36874ca6494db391cf' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2257350' - PS1='# ' - PS2='> ' + INVOCATION_ID=a5c3daa69a92488aad00fd10a49e2d07 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1200642 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/pbuilderrc_fpB7 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b1 --logfile b1/build.log unifrac_1.3-4.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/pbuilderrc_9me8 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b2 --logfile b2/build.log unifrac_1.3-4.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2257350/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -317,7 +2891,7 @@ Get: 176 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] -Fetched 103 MB in 9s (12.0 MB/s) +Fetched 103 MB in 2s (46.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -889,8 +3463,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Oct 31 08:53:37 UTC 2025. -Universal Time is now: Fri Oct 31 08:53:37 UTC 2025. +Local time is now: Fri Oct 31 08:57:02 UTC 2025. +Universal Time is now: Fri Oct 31 08:57:02 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -1066,7 +3640,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/unifrac-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../unifrac_1.3-4_source.changes +I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/unifrac-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../unifrac_1.3-4_source.changes dpkg-buildpackage: info: source package unifrac dpkg-buildpackage: info: source version 1.3-4 dpkg-buildpackage: info: source distribution unstable @@ -1100,21 +3678,21 @@ running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac -copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac +copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests +copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests -copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data -copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data -copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data -copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data +copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data +copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data -copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data +copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data +copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension @@ -1154,7 +3732,7 @@ self.assertAlmostEqual(actual[0], expected) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -======================= 49 passed, 4 warnings in 21.61s ======================== +======================= 49 passed, 4 warnings in 15.69s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1181,37 +3759,37 @@ running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac -creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_methods.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_meta.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests -copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests +creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_methods.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_meta.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ +copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_meta.py to _meta.cpython-313.pyc -byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_methods.py to _methods.cpython-313.pyc +byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_api.py to test_api.cpython-313.pyc -byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-313.pyc -byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_methods.py to _methods.cpython-313.pyc +byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating unifrac.egg-info @@ -1261,8 +3839,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_1.3-4_amd64.deb'. dpkg-deb: building package 'python3-unifrac-dbgsym' in '../python3-unifrac-dbgsym_1.3-4_amd64.deb'. +dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_1.3-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../unifrac_1.3-4_amd64.buildinfo dpkg-genchanges --build=binary -O../unifrac_1.3-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1270,12 +3848,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1200642/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2257350 and its subdirectories -I: Current time: Thu Oct 30 20:54:57 -12 2025 -I: pbuilder-time-stamp: 1761900897 +I: removing directory /srv/workspace/pbuilder/1200642 and its subdirectories +I: Current time: Fri Oct 31 22:58:39 +14 2025 +I: pbuilder-time-stamp: 1761901119 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/unifrac_1.3-4.diff: 88.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/unifrac_1.3-4.diff.gz b2/build.log: 87.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 83.7% -- replaced with stdout Fri Oct 31 08:58:43 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_unifrac_forky_amd64_1761901123 + touch /var/log/reproducible-builds/diffoscope_stamp_unifrac_forky_amd64_1761901123 + RESULT=0 + systemd-run '--description=diffoscope on unifrac/1.3-4 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_11-71935 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s --run-session -c jenkins-reproducible-forky-diffoscope-24285371-fcd0-448e-b096-02b929d4e0c9 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/dbd-tmp-TC2kA4L ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/unifrac_1.3-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/unifrac_1.3-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/unifrac_1.3-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b1/unifrac_1.3-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b2/unifrac_1.3-4_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_11-71935.service; invocation ID: c736f7d2085242be8dc65a61273c2e8d # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/unifrac_1.3-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/unifrac_1.3-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/unifrac_1.3-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b1/unifrac_1.3-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ADwsWI4s/b2/unifrac_1.3-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 198ms CPU time consumed: 173ms Memory peak: 17.7M (swap: 0B) _ __ _ _ _ __ (_)/ _|_ __ __ _ ___ | | | | '_ \| | |_| '__/ _` |/ __| | |_| | | | | | _| | | (_| | (__ \__,_|_| |_|_|_| |_| \__,_|\___| Fri Oct 31 08:58:43 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 08:58:43 UTC 2025 I: unifrac from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 08:58:44] INFO: Starting at 2025-10-31 08:58:44.153537 [2025-10-31 08:58:44] INFO: Generating the pages of 1 package(s) [2025-10-31 08:58:44] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/unifrac didn't produce a buildlog, even though it has been built. [2025-10-31 08:58:44] INFO: Finished at 2025-10-31 08:58:44.418323, took: 0:00:00.264788 Fri Oct 31 08:58:44 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/unifrac.html Fri Oct 31 08:58:44 UTC 2025 I: Removing signed unifrac_1.3-4_amd64.buildinfo.asc files: removed './b1/unifrac_1.3-4_amd64.buildinfo.asc' removed './b2/unifrac_1.3-4_amd64.buildinfo.asc' 1761901124 amd64 forky unifrac Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/unifrac_1.3-4.rbuild.log: 81.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/unifrac_1.3-4.rbuild.log.gz [2025-10-31 08:58:44] INFO: Starting at 2025-10-31 08:58:44.737072 [2025-10-31 08:58:44] INFO: Generating the pages of 1 package(s) [2025-10-31 08:58:44] INFO: Finished at 2025-10-31 08:58:44.996422, took: 0:00:00.259353 All cleanup done. Fri Oct 31 08:58:45 UTC 2025 - total duration: 0h 6m 46s. Fri Oct 31 08:58:45 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-NWvgC1bj, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 6min 47.757s CPU time consumed: 3.310s Memory peak: 44.7M (swap: 0B)