Running as unit: rb-build-amd64_13-24549.service ==================================================================================== Thu Nov 21 14:28:54 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_13) on jenkins, called using "ionos11-amd64 ionos5-amd64" as arguments. Thu Nov 21 14:28:54 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-weiLZM3T" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 14:28:54 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Nov 21 14:28:54 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-YSsBMS' Thu Nov 21 14:28:56 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Nov 21 14:28:56 UTC 2024 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-robxaC' ok, let's check if nim-hts is building anywhere yet… ok, nim-hts is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of nim-hts in unstable on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Thu Nov 21 14:29:09 UTC 2024 I: starting to build nim-hts/unstable/amd64 on jenkins on '2024-11-21 14:28' Thu Nov 21 14:29:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_13/24549/console.log 1732199349 amd64 unstable nim-hts Thu Nov 21 14:29:09 UTC 2024 I: Downloading source for unstable/nim-hts=0.3.19+ds-1 --2024-11-21 14:29:09-- http://deb.debian.org/debian/pool/main/n/nim-hts/nim-hts_0.3.19%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2235 (2.2K) [text/prs.lines.tag] Saving to: ‘nim-hts_0.3.19+ds-1.dsc’ 0K .. 100% 330M=0s 2024-11-21 14:29:09 (330 MB/s) - ‘nim-hts_0.3.19+ds-1.dsc’ saved [2235/2235] --2024-11-21 14:29:09-- http://deb.debian.org/debian/pool/main/n/nim-hts/nim-hts_0.3.19%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2235 (2.2K) [text/prs.lines.tag] Saving to: ‘nim-hts_0.3.19+ds-1.dsc’ 0K .. 100% 330M=0s 2024-11-21 14:29:09 (330 MB/s) - ‘nim-hts_0.3.19+ds-1.dsc’ saved [2235/2235] Thu Nov 21 14:29:09 UTC 2024 I: nim-hts_0.3.19+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: nim-hts Binary: nim-hts-dev, nim-hts-examples Architecture: all Version: 0.3.19+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra , Debian Nim Team Homepage: https://github.com/brentp/hts-nim Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/nim-hts Vcs-Git: https://salsa.debian.org/med-team/nim-hts.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libhts-dev, libhts3 Build-Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools Package-List: nim-hts-dev deb libs optional arch=all nim-hts-examples deb libs optional arch=all Checksums-Sha1: bbd78cfac9de8ccb66e3fd75f4f88e9b471cc9da 527396 nim-hts_0.3.19+ds.orig.tar.xz 6e21aa73f0439dd801d78ca80b6933de207ab312 341084 nim-hts_0.3.19+ds-1.debian.tar.xz Checksums-Sha256: 673b91e62256ac14baebaa35cbf485fc89dbc9ba470fdae49b248546919db693 527396 nim-hts_0.3.19+ds.orig.tar.xz 7ac2d56a7c289d409a298aac6131cb15c76a17428626f8b0dd40920747506e50 341084 nim-hts_0.3.19+ds-1.debian.tar.xz Files: 1095ce5fc83b38cd64a8f2797177f12f 527396 nim-hts_0.3.19+ds.orig.tar.xz 18c41c1a2317cf7bd0cb59132df33da2 341084 nim-hts_0.3.19+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmFukYcSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nx6aQP/1mrYEQXedKL4Jja3zx/257nKMWNlKJc x+YTtfKLCOFBbMuSssoIgyMJhxNe16+vHtMBAgmeFqWzjr/GvtHH64qAqMB53MIU vLt4/mOMdqRmH4C8BLFuL4GA51o4BUHeOiTd8BdurjfY8xrI6Y2YTqMSMvu2so+i oMra7HBZNl33bG3WKDU9Ml81G11ulWDWngPQVKYozFVaCAKcF5rmhSjkvCJYBXuF bocSiHrT//vILfXjpBJdQmJUYo21kZisbtt8vaIOXCjkAzZIu0MTx22g3qma9mLs lg1ExxBYNhRmOEonuAhf5/Pz0vHv/YYm3D1LAoFsbaFF0FSs8YlKAEwoEo/3UEnr jG12UyFRVWZp1UeBn3o6dRFh5g+nq1uxj9CvvcuyyKQYsXm1nZ6ghAL+vF6JOqTo L5cDYEfjcAvZ8/iLxQpycJR9LZbQDVqDstrzJSnN4oHdqyTDg541gcvZNe8Mwsx1 jUoI5D+dkERrwsk4LrPQpbhDogj03Hry7KnoZM8CKC0RlBT/vnSOoU8zXVleeVxZ UPtr6Wt++9iON/xUlHqHddWBAB+a32IY7tdiLxXAEoMzJCwAq35CzGxH15Jn/o2O Rz1X5ONk92WlkRxkTzUxJg2wqCE+IIGF0IuYAxqiV2cMuANFLQp0Wf5yq6bVgJKa zYlghJQeAkwS =pYXE -----END PGP SIGNATURE----- Thu Nov 21 14:29:09 UTC 2024 I: Checking whether the package is not for us Thu Nov 21 14:29:09 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Nov 21 14:29:09 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Nov 21 14:29:09 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Nov 21 14:29:09 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-8Rtz24' ==================================================================================== Thu Nov 21 14:29:10 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 nim-hts unstable /srv/reproducible-results/rbuild-debian/r-b-build.UaJ3MOBw 0.3.19+ds-1" as arguments. Thu Nov 21 14:29:10 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-5F2FKu7T" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 14:29:10 UTC 2024 I: Downloading source for unstable/nim-hts=0.3.19+ds-1 Reading package lists... NOTICE: 'nim-hts' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nim-hts.git Please use: git clone https://salsa.debian.org/med-team/nim-hts.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 871 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main nim-hts 0.3.19+ds-1 (dsc) [2235 B] Get:2 http://deb.debian.org/debian unstable/main nim-hts 0.3.19+ds-1 (tar) [527 kB] Get:3 http://deb.debian.org/debian unstable/main nim-hts 0.3.19+ds-1 (diff) [341 kB] Fetched 871 kB in 0s (10.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'nim-hts' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nim-hts.git Please use: git clone https://salsa.debian.org/med-team/nim-hts.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 871 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main nim-hts 0.3.19+ds-1 (dsc) [2235 B] Get:2 http://deb.debian.org/debian unstable/main nim-hts 0.3.19+ds-1 (tar) [527 kB] Get:3 http://deb.debian.org/debian unstable/main nim-hts 0.3.19+ds-1 (diff) [341 kB] Fetched 871 kB in 0s (10.1 MB/s) Download complete and in download only mode ============================================================================= Building nim-hts in unstable on amd64 on ionos11-amd64 now. Date: Thu Nov 21 14:29:11 UTC 2024 Date UTC: Thu Nov 21 14:29:11 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 02:29:11 -12 2024 I: pbuilder-time-stamp: 1732199351 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nim-hts_0.3.19+ds-1.dsc] I: copying [./nim-hts_0.3.19+ds.orig.tar.xz] I: copying [./nim-hts_0.3.19+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Oct 19 09:36:07 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nim-hts_0.3.19+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting nim-hts in nim-hts-0.3.19+ds dpkg-source: info: unpacking nim-hts_0.3.19+ds.orig.tar.xz dpkg-source: info: unpacking nim-hts_0.3.19+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dontDoNestedTests.patch dpkg-source: info: applying disable-test-with-sourceless-file.patch dpkg-source: info: applying fix-version-comparision.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/225064/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4a0d0a83b583455f9f335caec594d7ce' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='225064' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UaJ3MOBw/pbuilderrc_oSoJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UaJ3MOBw/b1 --logfile b1/build.log nim-hts_0.3.19+ds-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/225064/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpcre3{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} nim{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl git krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-gffutils python3-matplotlib wget 0 packages upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 43.5 MB of archives. After unpacking 158 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 21 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 bcftools amd64 1.20-2 [760 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.1-1+b1 [54.8 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2+b1 [208 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b2 [642 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.5.18+dfsg-3+b1 [303 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.4.0-1+b1 [87.2 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.6.0-1 [23.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.6.0-1 [170 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.11.0-1 [472 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.20+ds-2 [1701 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpcre3 amd64 2:8.39-15.1 [346 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 nim amd64 1.6.14-3 [4164 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.20-3 [653 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 tabix amd64 1.20+ds-2 [486 kB] Fetched 43.5 MB in 2s (28.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../15-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../16-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../17-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../18-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../19-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../20-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../21-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../22-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../23-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../24-libldap-2.5-0_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../25-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../26-libnghttp3-9_1.4.0-1+b1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.4.0-1+b1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../27-libngtcp2-16_1.6.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../28-libngtcp2-crypto-gnutls8_1.6.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../29-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../30-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../31-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../32-libcurl3t64-gnutls_8.11.0-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.11.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../33-libdeflate0_1.22-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.22-1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../34-libhtscodecs2_1.6.1-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../35-libhts3t64_1.20+ds-2_amd64.deb ... Unpacking libhts3t64:amd64 (1.20+ds-2) ... Selecting previously unselected package bcftools. Preparing to unpack .../36-bcftools_1.20-2_amd64.deb ... Unpacking bcftools (1.20-2) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../37-comerr-dev_2.1-1.47.1-1+b1_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../38-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../39-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../40-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../41-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../43-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../44-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../45-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../46-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../47-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../48-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../49-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../50-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../51-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../52-libgssrpc4t64_1.21.3-3_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-3) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../53-libkadm5clnt-mit12_1.21.3-3_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-3) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../54-libkdb5-10t64_1.21.3-3_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-3) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../55-libkadm5srv-mit12_1.21.3-3_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-3) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../56-krb5-multidev_1.21.3-3_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-3) ... Selecting previously unselected package libbrotli-dev:amd64. Preparing to unpack .../57-libbrotli-dev_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli-dev:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../58-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libevent-2.1-7t64:amd64. Preparing to unpack .../59-libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:amd64. Preparing to unpack .../60-libunbound8_1.22.0-1_amd64.deb ... Unpacking libunbound8:amd64 (1.22.0-1) ... Selecting previously unselected package libgnutls-dane0t64:amd64. Preparing to unpack .../61-libgnutls-dane0t64_3.8.8-2_amd64.deb ... Unpacking libgnutls-dane0t64:amd64 (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:amd64. Preparing to unpack .../62-libgnutls-openssl27t64_3.8.8-2_amd64.deb ... Unpacking libgnutls-openssl27t64:amd64 (3.8.8-2) ... Selecting previously unselected package libidn2-dev:amd64. Preparing to unpack .../63-libidn2-dev_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-dev:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit-dev:amd64. Preparing to unpack .../64-libp11-kit-dev_0.25.5-2+b1_amd64.deb ... Unpacking libp11-kit-dev:amd64 (0.25.5-2+b1) ... Selecting previously unselected package libtasn1-6-dev:amd64. Preparing to unpack .../65-libtasn1-6-dev_4.19.0-3+b3_amd64.deb ... Unpacking libtasn1-6-dev:amd64 (4.19.0-3+b3) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../66-libgmpxx4ldbl_2%3a6.3.0+dfsg-2+b2_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b2) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../67-libgmp-dev_2%3a6.3.0+dfsg-2+b2_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-2+b2) ... Selecting previously unselected package nettle-dev:amd64. Preparing to unpack .../68-nettle-dev_3.10-1+b1_amd64.deb ... Unpacking nettle-dev:amd64 (3.10-1+b1) ... Selecting previously unselected package libgnutls28-dev:amd64. Preparing to unpack .../69-libgnutls28-dev_3.8.8-2_amd64.deb ... Unpacking libgnutls28-dev:amd64 (3.8.8-2) ... Selecting previously unselected package libkrb5-dev:amd64. Preparing to unpack .../70-libkrb5-dev_1.21.3-3_amd64.deb ... Unpacking libkrb5-dev:amd64 (1.21.3-3) ... Selecting previously unselected package libldap-dev:amd64. Preparing to unpack .../71-libldap-dev_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-dev:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../72-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../73-pkgconf-bin_1.8.1-4_amd64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../74-pkgconf_1.8.1-4_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:amd64. Preparing to unpack .../75-libnghttp2-dev_1.64.0-1_amd64.deb ... Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-dev:amd64. Preparing to unpack .../76-libnghttp3-dev_1.4.0-1+b1_amd64.deb ... Unpacking libnghttp3-dev:amd64 (1.4.0-1+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nim-hts-0.3.19+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nim-hts_0.3.19+ds-1_source.changes dpkg-buildpackage: info: source package nim-hts dpkg-buildpackage: info: source version 0.3.19+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.19+ds' dh_auto_clean # remnants from testing rm -f ____t.vcf t.gz ti.txt.gz ti.txt.gz.csi rm -f tests/run tests/HG02002.bam.csi tests/auxtest tests/newsample.vcf tests/outmissing.vcf tests/outv.vcf tests/outz.vcf tests/sample.fa.fai tests/all tests/htstest tests/bgzftest tests/bamtest rm -rf tests/nimcache make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.19+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/nim-hts-dev.substvars debian/nim-hts-examples.substvars debian/files rm -fr -- debian/nim-hts-dev/ debian/tmp/ debian/nim-hts-examples/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.19+ds' dh_auto_build # Regenerate repacked files cat tests/sa.sam | samtools view -Sb - > tests/sa.bam samtools index tests/sa.bam tests/sa.bam.bai cat debian/missing-sources/HG02002.sam | samtools view -Sb - > tests/HG02002.bam samtools index tests/HG02002.bam tests/HG02002.bam.bai tabix tests/test.vcf.gz bcftools index tests/test.bcf make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.19+ds' rm -f debian/nim-hts-dev.debhelper.log debian/nim-hts-examples.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.19+ds' nim c --nimcache:/build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache tests/all.nim Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] Hint: used config file '/build/reproducible-path/nim-hts-0.3.19+ds/tests/nim.cfg' [Conf] ............................................................................................................. /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/flag.nim(1, 18) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(1, 17) [DuplicateModuleImport] . /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(1, 18) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/flag.nim(1, 18) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(2, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(57, 34) Warning: target type is larger than source type [CastSizes] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(248, 34) template/generic instantiation of `bam_get_cigar` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(52, 46) Warning: target type is larger than source type [CastSizes] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(262, 52) Warning: implicit conversion to 'cstring' from a non-const location: region; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(373, 28) Warning: implicit conversion to 'cstring' from a non-const location: mode; this will become a compile time error in the future [CStringConv] .. /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(3, 1) Hint: duplicate import of 'strformat'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(3, 8) [DuplicateModuleImport] .... /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(118, 18) Warning: conversion to enum with holes is unsafe: Status(ret) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(119, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(181, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(190, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(288, 18) Warning: conversion to enum with holes is unsafe: Status(int(bcf_update_format(f.v.vcf.header.hdr, f.v.c, cstring(key), nil, 0, cint(htype)))) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(297, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(309, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(320, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(352, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(359, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(366, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(376, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(391, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(405, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(432, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(436, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(441, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(461, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(467, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(527, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fmt.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(542, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fld.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(601, 27) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(603, 31) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(645, 30) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(664, 36) Warning: implicit conversion to 'cstring' from a non-const location: `[]`(region) do: 0 .. pred(cidx, 1); this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(700, 32) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] . /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/fai.nim(38, 24) Warning: See corresponding Defect; IndexError is deprecated [Deprecated] ... /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/csi.nim(17, 51) Warning: implicit conversion to 'cstring' from a non-const location: base_path & ".csi"; this will become a compile time error in the future [CStringConv] ... /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(10, 18) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(53, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(13, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(71, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(13, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(63, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(66, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(25, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(40, 18) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(58, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] . /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(23, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(46, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(63, 13) template/generic instantiation of `check` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(448, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(404, 7) Hint: 'current_line' is declared but not used [XDeclaredButNotUsed] /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(406, 7) Hint: 'currentBlock' is declared but not used [XDeclaredButNotUsed] /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(411, 7) Hint: 'block_pos_i' is declared but not used [XDeclaredButNotUsed] ..... CC: ../../../../usr/lib/nim/lib/std/private/digitsutils.nim CC: ../../../../usr/lib/nim/lib/system/assertions.nim CC: ../../../../usr/lib/nim/lib/system/formatfloat.nim CC: ../../../../usr/lib/nim/lib/system/dollars.nim CC: ../../../../usr/lib/nim/lib/system/io.nim CC: ../../../../usr/lib/nim/lib/system.nim CC: ../../../../usr/lib/nim/lib/std/exitprocs.nim CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../../../usr/lib/nim/lib/pure/math.nim CC: ../../../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../../../usr/lib/nim/lib/pure/unicode.nim CC: ../../../../usr/lib/nim/lib/pure/strutils.nim CC: ../../../../usr/lib/nim/lib/pure/streams.nim CC: ../../../../usr/lib/nim/lib/pure/times.nim CC: ../../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sets.nim CC: ../../../../usr/lib/nim/lib/pure/os.nim CC: ../../../../usr/lib/nim/lib/pure/strformat.nim CC: ../../../../usr/lib/nim/lib/pure/terminal.nim CC: ../../../../usr/lib/nim/lib/pure/unittest.nim CC: ../src/hts/private/hts_concat.nim CC: ../src/hts/bam/flag.nim CC: flagtest.nim CC: ../src/hts/bam.nim CC: cigartest.nim CC: htstest.nim CC: ../src/hts/vcf.nim CC: ../src/hts/fai.nim CC: ../src/hts/bgzf.nim CC: ../src/hts/csi.nim CC: ../src/hts/bgzf/bgzi.nim CC: ../src/hts/stats.nim CC: ../src/hts.nim CC: bgzftest.nim CC: faitest.nim CC: auxtest.nim CC: vcftest.nim CC: bamtest.nim CC: statstests.nim CC: vcfiso.nim CC: ../src/hts/files.nim CC: test_files.nim CC: all.nim /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c: In function 'atmvcfisodotnim_Init000': /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c:2084:91: error: assignment to 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, NI64 *, NI64 *)' {aka 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} from incompatible pointer type 'tyProc__4BbLNWc9ciYck1uKMhycHnQ' {aka 'int (*)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} [-Wincompatible-pointer-types] 2084 | read_func = Dl_1644167502_; | ^ /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c: In function 'write_linked_blocks__vcftest_4811': /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c:2344:81: error: assignment to 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, NI64 *, NI64 *)' {aka 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} from incompatible pointer type 'tyProc__4BbLNWc9ciYck1uKMhycHnQ' {aka 'int (*)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} [-Wincompatible-pointer-types] 2344 | read_fn = Dl_1644168003_; | ^ /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c:6188:51: error: assignment to 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, NI64 *, NI64 *)' {aka 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} from incompatible pointer type 'tyProc__4BbLNWc9ciYck1uKMhycHnQ' {aka 'int (*)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} [-Wincompatible-pointer-types] 6188 | read_func = Dl_1644167502_; | ^ /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c:6370:41: error: assignment to 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, NI64 *, NI64 *)' {aka 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} from incompatible pointer type 'tyProc__4BbLNWc9ciYck1uKMhycHnQ' {aka 'int (*)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} [-Wincompatible-pointer-types] 6370 | read_fn = Dl_1644168003_; | ^ Error: execution of an external compiler program 'gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c' failed with exit code: 1 make[1]: *** [debian/rules:20: override_dh_auto_test] Error 1 make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.19+ds' make: *** [debian/rules:6: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem W: Stray processes left from build: * system-pbuilder-build-nim\x2dhts_0.3.19\x2bds\x2d1-225064.slice - Slice /system/pbuilder/build/nim-hts_0.3.19+ds-1/225064 Loaded: loaded Active: active since Thu 2024-11-21 02:29:25 -12; 50s ago Tasks: 18 Memory: 461.8M CPU: 29.611s CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-nim\x2dhts_0.3.19\x2bds\x2d1.slice/system-pbuilder-build-nim\x2dhts_0.3.19\x2bds\x2d1-225064.slice `-run-rf4094d29abac484299d3714410d26088.scope |-231798 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c" |-231801 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c |-231805 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccRYcrfO.s |-231924 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c" |-231925 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c |-231926 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @mbgzftest.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccVr4Luc.s |-231927 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c" |-231932 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c |-231941 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c" |-231943 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c |-231944 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @mvcftest.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccgJ0AlB.s |-231945 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c" |-231946 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c |-231949 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @mbamtest.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccCUa1Hh.s |-231963 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c" |-231967 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c |-231968 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @mtest_files.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccLOny4O.s `-232010 as -W -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests --64 -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c.o /tmp/cc1hTUFr.s Nov 21 02:29:25 ionos11-amd64 systemd[1]: Created slice system-pbuilder-build-nim\x2dhts_0.3.19\x2bds\x2d1-225064.slice - Slice /system/pbuilder/build/nim-hts_0.3.19+ds-1/225064. I: cleaning the build env I: removing directory /srv/workspace/pbuilder/225064 and its subdirectories Starting cleanup. All cleanup done. Thu Nov 21 14:30:18 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-5F2FKu7T, removing. /srv/reproducible-results/rbuild-debian/r-b-build.UaJ3MOBw: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 14:30 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 14:29 b2 -rw-r--r-- 1 jenkins jenkins 2235 Oct 19 2021 nim-hts_0.3.19+ds-1.dsc -rw------- 1 jenkins jenkins 3359 Nov 21 14:29 rbuildlog.tyJJ8U4 /srv/reproducible-results/rbuild-debian/r-b-build.UaJ3MOBw/b1: total 64 -rw-r--r-- 1 jenkins jenkins 64379 Nov 21 14:30 build.log /srv/reproducible-results/rbuild-debian/r-b-build.UaJ3MOBw/b2: total 0 Thu Nov 21 14:30:18 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 02:29:11 -12 2024 I: pbuilder-time-stamp: 1732199351 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nim-hts_0.3.19+ds-1.dsc] I: copying [./nim-hts_0.3.19+ds.orig.tar.xz] I: copying [./nim-hts_0.3.19+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Oct 19 09:36:07 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nim-hts_0.3.19+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting nim-hts in nim-hts-0.3.19+ds dpkg-source: info: unpacking nim-hts_0.3.19+ds.orig.tar.xz dpkg-source: info: unpacking nim-hts_0.3.19+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dontDoNestedTests.patch dpkg-source: info: applying disable-test-with-sourceless-file.patch dpkg-source: info: applying fix-version-comparision.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/225064/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4a0d0a83b583455f9f335caec594d7ce' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='225064' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UaJ3MOBw/pbuilderrc_oSoJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UaJ3MOBw/b1 --logfile b1/build.log nim-hts_0.3.19+ds-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/225064/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpcre3{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} nim{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl git krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-gffutils python3-matplotlib wget 0 packages upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 43.5 MB of archives. After unpacking 158 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 21 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 bcftools amd64 1.20-2 [760 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.1-1+b1 [54.8 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2+b1 [208 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b2 [642 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.5.18+dfsg-3+b1 [303 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.4.0-1+b1 [87.2 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.6.0-1 [23.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libngtcp2-dev amd64 1.6.0-1 [170 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.11.0-1 [472 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.20+ds-2 [1701 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpcre3 amd64 2:8.39-15.1 [346 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 nim amd64 1.6.14-3 [4164 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.20-3 [653 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 tabix amd64 1.20+ds-2 [486 kB] Fetched 43.5 MB in 2s (28.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. 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Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../15-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../16-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../17-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../18-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../19-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../20-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../21-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../22-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../23-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../24-libldap-2.5-0_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../25-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../26-libnghttp3-9_1.4.0-1+b1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.4.0-1+b1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../27-libngtcp2-16_1.6.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../28-libngtcp2-crypto-gnutls8_1.6.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../29-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../30-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../31-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../32-libcurl3t64-gnutls_8.11.0-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.11.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../33-libdeflate0_1.22-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.22-1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../34-libhtscodecs2_1.6.1-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../35-libhts3t64_1.20+ds-2_amd64.deb ... Unpacking libhts3t64:amd64 (1.20+ds-2) ... Selecting previously unselected package bcftools. Preparing to unpack .../36-bcftools_1.20-2_amd64.deb ... Unpacking bcftools (1.20-2) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../37-comerr-dev_2.1-1.47.1-1+b1_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../38-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../39-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../40-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../41-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../43-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../44-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../45-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../46-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../47-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../48-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../49-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../50-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../51-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../52-libgssrpc4t64_1.21.3-3_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-3) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../53-libkadm5clnt-mit12_1.21.3-3_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-3) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../54-libkdb5-10t64_1.21.3-3_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-3) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../55-libkadm5srv-mit12_1.21.3-3_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-3) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../56-krb5-multidev_1.21.3-3_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-3) ... Selecting previously unselected package libbrotli-dev:amd64. Preparing to unpack .../57-libbrotli-dev_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli-dev:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../58-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libevent-2.1-7t64:amd64. Preparing to unpack .../59-libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:amd64. Preparing to unpack .../60-libunbound8_1.22.0-1_amd64.deb ... Unpacking libunbound8:amd64 (1.22.0-1) ... Selecting previously unselected package libgnutls-dane0t64:amd64. Preparing to unpack .../61-libgnutls-dane0t64_3.8.8-2_amd64.deb ... Unpacking libgnutls-dane0t64:amd64 (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:amd64. Preparing to unpack .../62-libgnutls-openssl27t64_3.8.8-2_amd64.deb ... Unpacking libgnutls-openssl27t64:amd64 (3.8.8-2) ... Selecting previously unselected package libidn2-dev:amd64. Preparing to unpack .../63-libidn2-dev_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-dev:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit-dev:amd64. Preparing to unpack .../64-libp11-kit-dev_0.25.5-2+b1_amd64.deb ... Unpacking libp11-kit-dev:amd64 (0.25.5-2+b1) ... Selecting previously unselected package libtasn1-6-dev:amd64. Preparing to unpack .../65-libtasn1-6-dev_4.19.0-3+b3_amd64.deb ... Unpacking libtasn1-6-dev:amd64 (4.19.0-3+b3) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../66-libgmpxx4ldbl_2%3a6.3.0+dfsg-2+b2_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b2) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../67-libgmp-dev_2%3a6.3.0+dfsg-2+b2_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-2+b2) ... Selecting previously unselected package nettle-dev:amd64. Preparing to unpack .../68-nettle-dev_3.10-1+b1_amd64.deb ... Unpacking nettle-dev:amd64 (3.10-1+b1) ... Selecting previously unselected package libgnutls28-dev:amd64. Preparing to unpack .../69-libgnutls28-dev_3.8.8-2_amd64.deb ... Unpacking libgnutls28-dev:amd64 (3.8.8-2) ... Selecting previously unselected package libkrb5-dev:amd64. Preparing to unpack .../70-libkrb5-dev_1.21.3-3_amd64.deb ... Unpacking libkrb5-dev:amd64 (1.21.3-3) ... Selecting previously unselected package libldap-dev:amd64. Preparing to unpack .../71-libldap-dev_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-dev:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../72-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../73-pkgconf-bin_1.8.1-4_amd64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../74-pkgconf_1.8.1-4_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:amd64. Preparing to unpack .../75-libnghttp2-dev_1.64.0-1_amd64.deb ... Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-dev:amd64. Preparing to unpack .../76-libnghttp3-dev_1.4.0-1+b1_amd64.deb ... Unpacking libnghttp3-dev:amd64 (1.4.0-1+b1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:amd64. Preparing to unpack .../77-libngtcp2-crypto-gnutls-dev_1.6.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls-dev:amd64 (1.6.0-1) ... Selecting previously unselected package libngtcp2-dev:amd64. Preparing to unpack .../78-libngtcp2-dev_1.6.0-1_amd64.deb ... Unpacking libngtcp2-dev:amd64 (1.6.0-1) ... Selecting previously unselected package libpsl-dev:amd64. Preparing to unpack .../79-libpsl-dev_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl-dev:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../80-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:amd64. Preparing to unpack .../81-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nim-hts-0.3.19+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nim-hts_0.3.19+ds-1_source.changes dpkg-buildpackage: info: source package nim-hts dpkg-buildpackage: info: source version 0.3.19+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.19+ds' dh_auto_clean # remnants from testing rm -f ____t.vcf t.gz ti.txt.gz ti.txt.gz.csi rm -f tests/run tests/HG02002.bam.csi tests/auxtest tests/newsample.vcf tests/outmissing.vcf tests/outv.vcf tests/outz.vcf tests/sample.fa.fai tests/all tests/htstest tests/bgzftest tests/bamtest rm -rf tests/nimcache make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.19+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/nim-hts-dev.substvars debian/nim-hts-examples.substvars debian/files rm -fr -- debian/nim-hts-dev/ debian/tmp/ debian/nim-hts-examples/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.19+ds' dh_auto_build # Regenerate repacked files cat tests/sa.sam | samtools view -Sb - > tests/sa.bam samtools index tests/sa.bam tests/sa.bam.bai cat debian/missing-sources/HG02002.sam | samtools view -Sb - > tests/HG02002.bam samtools index tests/HG02002.bam tests/HG02002.bam.bai tabix tests/test.vcf.gz bcftools index tests/test.bcf make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.19+ds' rm -f debian/nim-hts-dev.debhelper.log debian/nim-hts-examples.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.19+ds' nim c --nimcache:/build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache tests/all.nim Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] Hint: used config file '/build/reproducible-path/nim-hts-0.3.19+ds/tests/nim.cfg' [Conf] ............................................................................................................. /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/flag.nim(1, 18) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(1, 17) [DuplicateModuleImport] . /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(1, 18) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/flag.nim(1, 18) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(2, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(57, 34) Warning: target type is larger than source type [CastSizes] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(248, 34) template/generic instantiation of `bam_get_cigar` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(52, 46) Warning: target type is larger than source type [CastSizes] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(262, 52) Warning: implicit conversion to 'cstring' from a non-const location: region; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(373, 28) Warning: implicit conversion to 'cstring' from a non-const location: mode; this will become a compile time error in the future [CStringConv] .. /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(3, 1) Hint: duplicate import of 'strformat'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(3, 8) [DuplicateModuleImport] .... /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(118, 18) Warning: conversion to enum with holes is unsafe: Status(ret) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(119, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(181, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(190, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(288, 18) Warning: conversion to enum with holes is unsafe: Status(int(bcf_update_format(f.v.vcf.header.hdr, f.v.c, cstring(key), nil, 0, cint(htype)))) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(297, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(309, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(320, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(352, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(359, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(366, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(376, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(391, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(405, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(432, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(436, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(441, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(461, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(467, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(527, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fmt.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(542, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fld.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(601, 27) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(603, 31) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(645, 30) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(664, 36) Warning: implicit conversion to 'cstring' from a non-const location: `[]`(region) do: 0 .. pred(cidx, 1); this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(700, 32) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] . /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/fai.nim(38, 24) Warning: See corresponding Defect; IndexError is deprecated [Deprecated] ... /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/csi.nim(17, 51) Warning: implicit conversion to 'cstring' from a non-const location: base_path & ".csi"; this will become a compile time error in the future [CStringConv] ... /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(10, 18) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(53, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(13, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(71, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(13, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(63, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(66, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(25, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(40, 18) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(58, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] . /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(23, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(46, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(63, 13) template/generic instantiation of `check` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(448, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(404, 7) Hint: 'current_line' is declared but not used [XDeclaredButNotUsed] /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(406, 7) Hint: 'currentBlock' is declared but not used [XDeclaredButNotUsed] /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(411, 7) Hint: 'block_pos_i' is declared but not used [XDeclaredButNotUsed] ..... CC: ../../../../usr/lib/nim/lib/std/private/digitsutils.nim CC: ../../../../usr/lib/nim/lib/system/assertions.nim CC: ../../../../usr/lib/nim/lib/system/formatfloat.nim CC: ../../../../usr/lib/nim/lib/system/dollars.nim CC: ../../../../usr/lib/nim/lib/system/io.nim CC: ../../../../usr/lib/nim/lib/system.nim CC: ../../../../usr/lib/nim/lib/std/exitprocs.nim CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../../../usr/lib/nim/lib/pure/math.nim CC: ../../../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../../../usr/lib/nim/lib/pure/unicode.nim CC: ../../../../usr/lib/nim/lib/pure/strutils.nim CC: ../../../../usr/lib/nim/lib/pure/streams.nim CC: ../../../../usr/lib/nim/lib/pure/times.nim CC: ../../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sets.nim CC: ../../../../usr/lib/nim/lib/pure/os.nim CC: ../../../../usr/lib/nim/lib/pure/strformat.nim CC: ../../../../usr/lib/nim/lib/pure/terminal.nim CC: ../../../../usr/lib/nim/lib/pure/unittest.nim CC: ../src/hts/private/hts_concat.nim CC: ../src/hts/bam/flag.nim CC: flagtest.nim CC: ../src/hts/bam.nim CC: cigartest.nim CC: htstest.nim CC: ../src/hts/vcf.nim CC: ../src/hts/fai.nim CC: ../src/hts/bgzf.nim CC: ../src/hts/csi.nim CC: ../src/hts/bgzf/bgzi.nim CC: ../src/hts/stats.nim CC: ../src/hts.nim CC: bgzftest.nim CC: faitest.nim CC: auxtest.nim CC: vcftest.nim CC: bamtest.nim CC: statstests.nim CC: vcfiso.nim CC: ../src/hts/files.nim CC: test_files.nim CC: all.nim /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c: In function 'atmvcfisodotnim_Init000': /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c:2084:91: error: assignment to 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, NI64 *, NI64 *)' {aka 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} from incompatible pointer type 'tyProc__4BbLNWc9ciYck1uKMhycHnQ' {aka 'int (*)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} [-Wincompatible-pointer-types] 2084 | read_func = Dl_1644167502_; | ^ /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c: In function 'write_linked_blocks__vcftest_4811': /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c:2344:81: error: assignment to 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, NI64 *, NI64 *)' {aka 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} from incompatible pointer type 'tyProc__4BbLNWc9ciYck1uKMhycHnQ' {aka 'int (*)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} [-Wincompatible-pointer-types] 2344 | read_fn = Dl_1644168003_; | ^ /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c:6188:51: error: assignment to 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, NI64 *, NI64 *)' {aka 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} from incompatible pointer type 'tyProc__4BbLNWc9ciYck1uKMhycHnQ' {aka 'int (*)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} [-Wincompatible-pointer-types] 6188 | read_func = Dl_1644167502_; | ^ /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c:6370:41: error: assignment to 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, NI64 *, NI64 *)' {aka 'int (**)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} from incompatible pointer type 'tyProc__4BbLNWc9ciYck1uKMhycHnQ' {aka 'int (*)(tyObject_BGZF__heiBLM9cAN1ojwKnyEOBHBg *, void *, void *, int *, long int *, long int *)'} [-Wincompatible-pointer-types] 6370 | read_fn = Dl_1644168003_; | ^ Error: execution of an external compiler program 'gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcfiso.nim.c' failed with exit code: 1 make[1]: *** [debian/rules:20: override_dh_auto_test] Error 1 make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.19+ds' make: *** [debian/rules:6: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem W: Stray processes left from build: * system-pbuilder-build-nim\x2dhts_0.3.19\x2bds\x2d1-225064.slice - Slice /system/pbuilder/build/nim-hts_0.3.19+ds-1/225064 Loaded: loaded Active: active since Thu 2024-11-21 02:29:25 -12; 50s ago Tasks: 18 Memory: 461.8M CPU: 29.611s CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-nim\x2dhts_0.3.19\x2bds\x2d1.slice/system-pbuilder-build-nim\x2dhts_0.3.19\x2bds\x2d1-225064.slice `-run-rf4094d29abac484299d3714410d26088.scope |-231798 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c" |-231801 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c |-231805 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @m..@s..@s..@s..@susr@slib@snim@slib@ssystem.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccRYcrfO.s |-231924 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c" |-231925 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c |-231926 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbgzftest.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @mbgzftest.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccVr4Luc.s |-231927 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c" |-231932 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c |-231941 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c" |-231943 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c |-231944 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mvcftest.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @mvcftest.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccgJ0AlB.s |-231945 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c" |-231946 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c |-231949 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mbamtest.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @mbamtest.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccCUa1Hh.s |-231963 /bin/sh -c "gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c" |-231967 gcc -c -w -fmax-errors=3 -I/usr/lib/nim/lib -I/build/reproducible-path/nim-hts-0.3.19+ds/tests -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c.o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c |-231968 /usr/libexec/gcc/x86_64-linux-gnu/14/cc1 -quiet -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests -imultiarch x86_64-linux-gnu /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mtest_files.nim.c -quiet -dumpdir /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/ -dumpbase @mtest_files.nim.c.c -dumpbase-ext .c -mtune=generic -march=x86-64 -w -fmax-errors=3 -fasynchronous-unwind-tables -o /tmp/ccLOny4O.s `-232010 as -W -I /usr/lib/nim/lib -I /build/reproducible-path/nim-hts-0.3.19+ds/tests --64 -o /build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache/@mfaitest.nim.c.o /tmp/cc1hTUFr.s Nov 21 02:29:25 ionos11-amd64 systemd[1]: Created slice system-pbuilder-build-nim\x2dhts_0.3.19\x2bds\x2d1-225064.slice - Slice /system/pbuilder/build/nim-hts_0.3.19+ds-1/225064. I: cleaning the build env I: removing directory /srv/workspace/pbuilder/225064 and its subdirectories nim-hts failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nim-hts_0.3.19+ds-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nim-hts_0.3.19+ds-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/nim-hts_0.3.19+ds-1.build1.log.gz' Thu Nov 21 14:30:19 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 83.1% -- replaced with stdout INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-21 14:30:20] INFO: Starting at 2024-11-21 14:30:20.376217 [2024-11-21 14:30:20] INFO: Generating the pages of 1 package(s) [2024-11-21 14:30:20] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/nim-hts didn't produce a buildlog, even though it has been built. [2024-11-21 14:30:20] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:20] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:20] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:20] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:20] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:20] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/nim-hts_0.3.14+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/nim-hts_0.3.14+ds-1.diff.gz is missing [2024-11-21 14:30:20] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/nim-hts_0.3.14+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/nim-hts_0.3.14+ds-1.diff.gz is missing [2024-11-21 14:30:20] INFO: Finished at 2024-11-21 14:30:20.664024, took: 0:00:00.287811 Thu Nov 21 14:30:20 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/nim-hts.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nim-hts_0.3.19+ds-1.rbuild.log: 81.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nim-hts_0.3.19+ds-1.rbuild.log.gz [2024-11-21 14:30:21] INFO: Starting at 2024-11-21 14:30:21.044077 [2024-11-21 14:30:21] INFO: Generating the pages of 1 package(s) [2024-11-21 14:30:21] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:21] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:21] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:21] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:21] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:21] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/nim-hts_0.3.19+ds-1.diff.gz is missing [2024-11-21 14:30:21] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/nim-hts_0.3.14+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/nim-hts_0.3.14+ds-1.diff.gz is missing [2024-11-21 14:30:21] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/nim-hts_0.3.14+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/nim-hts_0.3.14+ds-1.diff.gz is missing [2024-11-21 14:30:21] INFO: Finished at 2024-11-21 14:30:21.334135, took: 0:00:00.290063 All cleanup done. Thu Nov 21 14:30:21 UTC 2024 - total duration: 0h 1m 25s. Thu Nov 21 14:30:21 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-weiLZM3T, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 26.648s CPU time consumed: 4.794s