Running as unit: rb-build-amd64_13-33200.service ==================================================================================== Sun Feb 23 03:52:27 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_13) on jenkins, called using "ionos11-amd64 ionos5-amd64" as arguments. Sun Feb 23 03:52:27 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-pFoNO93O" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Feb 23 03:52:27 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sun Feb 23 03:52:27 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ZzsBfs' Sun Feb 23 03:52:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Sun Feb 23 03:52:28 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-YOTV6J' ok, let's check if libbioparser-dev is building anywhere yet… ok, libbioparser-dev is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libbioparser-dev in trixie on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Sun Feb 23 03:52:50 UTC 2025 I: starting to build libbioparser-dev/trixie/amd64 on jenkins on '2025-02-23 03:52' Sun Feb 23 03:52:50 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_13/33200/console.log 1740282770 amd64 trixie libbioparser-dev Sun Feb 23 03:52:50 UTC 2025 I: Downloading source for trixie/libbioparser-dev=3.1.0-1 --2025-02-23 03:52:50-- http://deb.debian.org/debian/pool/main/libb/libbioparser-dev/libbioparser-dev_3.1.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2066 (2.0K) [text/prs.lines.tag] Saving to: ‘libbioparser-dev_3.1.0-1.dsc’ 0K .. 100% 308M=0s 2025-02-23 03:52:50 (308 MB/s) - ‘libbioparser-dev_3.1.0-1.dsc’ saved [2066/2066] --2025-02-23 03:52:50-- http://deb.debian.org/debian/pool/main/libb/libbioparser-dev/libbioparser-dev_3.1.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2066 (2.0K) [text/prs.lines.tag] Saving to: ‘libbioparser-dev_3.1.0-1.dsc’ 0K .. 100% 308M=0s 2025-02-23 03:52:50 (308 MB/s) - ‘libbioparser-dev_3.1.0-1.dsc’ saved [2066/2066] Sun Feb 23 03:52:50 UTC 2025 I: libbioparser-dev_3.1.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbioparser-dev Binary: libbioparser-dev Architecture: all Version: 3.1.0-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rvaser/bioparser/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbioparser-dev Vcs-Git: https://salsa.debian.org/med-team/libbioparser-dev.git Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libgtest-dev, libbiosoup-dev (>> 0.11.0) Package-List: libbioparser-dev deb libdevel optional arch=all Checksums-Sha1: 061efd61294089b4b82dc90d72c2fb015e794e7d 1016738 libbioparser-dev_3.1.0.orig.tar.gz 8b7f3ee45bcc4eebe8e730c4db20ad2974fb0ba4 3108 libbioparser-dev_3.1.0-1.debian.tar.xz Checksums-Sha256: ddb48cb456c72cf2955adf056c9204caf65483ec0a5bbba47389bc30ed9fdd05 1016738 libbioparser-dev_3.1.0.orig.tar.gz 5e6d9f2d831d768ae84b05b6b5ffff7efd9ea2b73a756de5db36a6f822a68490 3108 libbioparser-dev_3.1.0-1.debian.tar.xz Files: 0d69f4d3e6209c8a818ecb21f5deca89 1016738 libbioparser-dev_3.1.0.orig.tar.gz 2177dd518762ea9f95543ba47f933396 3108 libbioparser-dev_3.1.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmX9r2oACgkQPCZ2P2xn 5uL+3BAAmuRxWnBIikipsk32aGXCImIRqHRsIfh/QvPWfX/cwlQj61N7DjW1GUFr jyVZYHmzPnTic+dzY+t9BjOh2EH7H7M185P6EHz1MV5gJTVpusBba470cwQPiDbI tO/mIgmSUepKoaC6oK5N761xN1HOJ4ph0Z4nD55oPVB+SReWWWZ+0RCdonOOGB8x FUJhLq3jGGKRhe1lTVM9zTf4Rn9ZCx7D0FVcee9KH0KbGXeXC+mLAAkoib1bm+Ms 7rwhUVR1sjWHcbabmgkvQgQPCfSwmEz5YzS/BGbL8Y6b5vCJpH8yXBxpRq7+LK8I DNAdeJtuGrF3r3A/t9Me8jvx2ZCSoIxvd4FuxcmEsxYUJLhn56wM43EJKL+9nv0F H7QZlFQRVS8V71Z8Gm6d9mdeUZU3mDBysVQDnRwOhRV0t30eZwg0JkLAmZJV9iTc DRkRJwHVZzyktFr5LPffq+Z+jTWgLGQ6iSLA5GHfFQufI4uZUEMH6ds0CmJaTi3+ ZI0uTJrY+MiEEW8meZYvRa0FtsF72r0Xqg7HmsZNX6YxW/gpuWqHId9mVLzH2RTA bAdBfUJ5PQdqKfW7U3K2ZN9yHUu/Byy3L+9Z80baTdJr/YJL651VJJUgmplzEjuj smmoy1A2hxlS1iLw7mZAU/1HT5p2Zpvdk2Ni9rOCFjJP8iDUrto= =/+fm -----END PGP SIGNATURE----- Sun Feb 23 03:52:50 UTC 2025 I: Checking whether the package is not for us Sun Feb 23 03:52:50 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Feb 23 03:52:50 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Feb 23 03:52:50 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sun Feb 23 03:52:50 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-AOndwW' ==================================================================================== Sun Feb 23 03:52:51 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 libbioparser-dev trixie /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO 3.1.0-1" as arguments. Sun Feb 23 03:52:51 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-PCqhuUa8" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Feb 23 03:52:52 UTC 2025 I: Downloading source for trixie/libbioparser-dev=3.1.0-1 Reading package lists... NOTICE: 'libbioparser-dev' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbioparser-dev.git Please use: git clone https://salsa.debian.org/med-team/libbioparser-dev.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1022 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (dsc) [2066 B] Get:2 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (tar) [1017 kB] Get:3 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (diff) [3108 B] Fetched 1022 kB in 0s (7970 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbioparser-dev' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbioparser-dev.git Please use: git clone https://salsa.debian.org/med-team/libbioparser-dev.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1022 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (dsc) [2066 B] Get:2 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (tar) [1017 kB] Get:3 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (diff) [3108 B] Fetched 1022 kB in 0s (7970 kB/s) Download complete and in download only mode ============================================================================= Building libbioparser-dev in trixie on amd64 on ionos11-amd64 now. Date: Sun Feb 23 03:52:52 UTC 2025 Date UTC: Sun Feb 23 03:52:52 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 22 15:52:53 -12 2025 I: pbuilder-time-stamp: 1740282773 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbioparser-dev_3.1.0-1.dsc] I: copying [./libbioparser-dev_3.1.0.orig.tar.gz] I: copying [./libbioparser-dev_3.1.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbioparser-dev_3.1.0-1.dsc: unsupported subcommand dpkg-source: info: extracting libbioparser-dev in libbioparser-dev-3.1.0 dpkg-source: info: unpacking libbioparser-dev_3.1.0.orig.tar.gz dpkg-source: info: unpacking libbioparser-dev_3.1.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3470837/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='fbea10b697824de7b6c2decfa4be5bde' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3470837' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/pbuilderrc_3OSk --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b1 --logfile b1/build.log libbioparser-dev_3.1.0-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3470837/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libgtest-dev, libbiosoup-dev (>> 0.11.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbiosoup-dev (>> 0.11.0); however: Package libbiosoup-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbiosoup-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 42.4 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 42.4 MB in 3s (14.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgtest-dev:amd64 (1.16.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.5-2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbioparser-dev-3.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbioparser-dev_3.1.0-1_source.changes dpkg-buildpackage: info: source package libbioparser-dev dpkg-buildpackage: info: source version 3.1.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_auto_configure -- -Dbioparser_build_tests=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dbioparser_build_tests=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found suitable version "1.3.1", minimum required is "1.2.8") -- Configuring done (5.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.1.0 -B/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/depend make[3]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbioparser-dev-3.1.0 /build/reproducible-path/libbioparser-dev-3.1.0 /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles/bioparser_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/build make[3]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' [ 14%] Building CXX object CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/paf_parser_test.cpp [ 28%] Building CXX object CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o [ 42%] Building CXX object CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/fasta_parser_test.cpp [ 57%] Building CXX object CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o [ 71%] Building CXX object CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o [ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/fastq_parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/mhap_parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/sam_parser_test.cpp [100%] Linking CXX executable bin/bioparser_test /usr/bin/cmake -E cmake_link_script CMakeFiles/bioparser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/bioparser_test.dir/link.d CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -o bin/bioparser_test /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' [100%] Built target bioparser_test make[2]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' set -e -x; for f in obj-*/bin/*_test; do [ ! -x $f ] || $f; done + [ ! -x obj-x86_64-linux-gnu/bin/bioparser_test ] + obj-x86_64-linux-gnu/bin/bioparser_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 35 tests from 6 test suites. [----------] Global test environment set-up. [----------] 1 test from BioparserParserTest [ RUN ] BioparserParserTest.Create [ OK ] BioparserParserTest.Create (4 ms) [----------] 1 test from BioparserParserTest (8 ms total) [----------] 10 tests from BioparserFastaTest [ RUN ] BioparserFastaTest.ParseWhole [ OK ] BioparserFastaTest.ParseWhole (12 ms) [ RUN ] BioparserFastaTest.ParseWholeWithoutTrimming [ OK ] BioparserFastaTest.ParseWholeWithoutTrimming (4 ms) [ RUN ] BioparserFastaTest.ParseInChunks [ OK ] BioparserFastaTest.ParseInChunks (9 ms) [ RUN ] BioparserFastaTest.FormatError [ OK ] BioparserFastaTest.FormatError (2 ms) [ RUN ] BioparserFastaTest.ParseAndReset [ OK ] BioparserFastaTest.ParseAndReset (2 ms) [ RUN ] BioparserFastaTest.CompressedParseWhole [ OK ] BioparserFastaTest.CompressedParseWhole (236 ms) [ RUN ] BioparserFastaTest.CompressedParseWholeWithoutTrimming [ OK ] BioparserFastaTest.CompressedParseWholeWithoutTrimming (2 ms) [ RUN ] BioparserFastaTest.CompressedParseInChunks [ OK ] BioparserFastaTest.CompressedParseInChunks (2 ms) [ RUN ] BioparserFastaTest.CompressedParseAndReset [ OK ] BioparserFastaTest.CompressedParseAndReset (11 ms) [ RUN ] BioparserFastaTest.CompressedFormatError [ OK ] BioparserFastaTest.CompressedFormatError (8 ms) [----------] 10 tests from BioparserFastaTest (306 ms total) [----------] 6 tests from BioparserFastqTest [ RUN ] BioparserFastqTest.ParseWhole [ OK ] BioparserFastqTest.ParseWhole (2 ms) [ RUN ] BioparserFastqTest.ParseInChunks [ OK ] BioparserFastqTest.ParseInChunks (2 ms) [ RUN ] BioparserFastqTest.FormatError [ OK ] BioparserFastqTest.FormatError (1 ms) [ RUN ] BioparserFastqTest.CompressedParseWhole [ OK ] BioparserFastqTest.CompressedParseWhole (4 ms) [ RUN ] BioparserFastqTest.CompressedParseInChunks [ OK ] BioparserFastqTest.CompressedParseInChunks (4 ms) [ RUN ] BioparserFastqTest.CompressedFormatError [ OK ] BioparserFastqTest.CompressedFormatError (2 ms) [----------] 6 tests from BioparserFastqTest (29 ms total) [----------] 6 tests from BioparserMhapTest [ RUN ] BioparserMhapTest.ParseWhole [ OK ] BioparserMhapTest.ParseWhole (7 ms) [ RUN ] BioparserMhapTest.ParseInChunks [ OK ] BioparserMhapTest.ParseInChunks (0 ms) [ RUN ] BioparserMhapTest.FormatError [ OK ] BioparserMhapTest.FormatError (7 ms) [ RUN ] BioparserMhapTest.CompressedParseWhole [ OK ] BioparserMhapTest.CompressedParseWhole (3 ms) [ RUN ] BioparserMhapTest.CompressedParseInChunks [ OK ] BioparserMhapTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserMhapTest.CompressedFormatError [ OK ] BioparserMhapTest.CompressedFormatError (2 ms) [----------] 6 tests from BioparserMhapTest (24 ms total) [----------] 6 tests from BioparserPafTest [ RUN ] BioparserPafTest.ParseWhole [ OK ] BioparserPafTest.ParseWhole (1 ms) [ RUN ] BioparserPafTest.ParseInChunks [ OK ] BioparserPafTest.ParseInChunks (1 ms) [ RUN ] BioparserPafTest.FormatError [ OK ] BioparserPafTest.FormatError (0 ms) [ RUN ] BioparserPafTest.CompressedParseWhole [ OK ] BioparserPafTest.CompressedParseWhole (1 ms) [ RUN ] BioparserPafTest.CompressedParseInChunks [ OK ] BioparserPafTest.CompressedParseInChunks (1 ms) [ RUN ] BioparserPafTest.CompressedFormatError [ OK ] BioparserPafTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserPafTest (27 ms total) [----------] 6 tests from BioparserSamTest [ RUN ] BioparserSamTest.ParseWhole [ OK ] BioparserSamTest.ParseWhole (3 ms) [ RUN ] BioparserSamTest.ParseInChunks [ OK ] BioparserSamTest.ParseInChunks (3 ms) [ RUN ] BioparserSamTest.FormatError [ OK ] BioparserSamTest.FormatError (0 ms) [ RUN ] BioparserSamTest.CompressedParseWhole [ OK ] BioparserSamTest.CompressedParseWhole (38 ms) [ RUN ] BioparserSamTest.CompressedParseInChunks [ OK ] BioparserSamTest.CompressedParseInChunks (34 ms) [ RUN ] BioparserSamTest.CompressedFormatError [ OK ] BioparserSamTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserSamTest (91 ms total) [----------] Global test environment tear-down [==========] 35 tests from 6 test suites ran. (488 ms total) [ PASSED ] 35 tests. make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbioparser-dev/ cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.1.0 -B/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/sam_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fasta_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/mhap_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/paf_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fastq_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserTargets.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfig.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfigVersion.cmake make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' dh_install debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' mv debian/`dh_listpackages`/usr/lib/*/cmake debian/`dh_listpackages`/usr/share rm -rf debian/`dh_listpackages`/usr/lib find debian -name meson.build -delete make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbioparser-dev' in '../libbioparser-dev_3.1.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../libbioparser-dev_3.1.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libbioparser-dev_3.1.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3470837 and its subdirectories I: Current time: Sat Feb 22 15:56:07 -12 2025 I: pbuilder-time-stamp: 1740282967 Sun Feb 23 03:56:07 UTC 2025 I: Signing ./b1/libbioparser-dev_3.1.0-1_amd64.buildinfo as libbioparser-dev_3.1.0-1_amd64.buildinfo.asc Sun Feb 23 03:56:07 UTC 2025 I: Signed ./b1/libbioparser-dev_3.1.0-1_amd64.buildinfo as ./b1/libbioparser-dev_3.1.0-1_amd64.buildinfo.asc Sun Feb 23 03:56:07 UTC 2025 - build #1 for libbioparser-dev/trixie/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Sun Feb 23 03:56:07 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-PCqhuUa8, removing. /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 23 03:56 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 23 03:52 b2 -rw-r--r-- 1 jenkins jenkins 2066 Mar 22 2024 libbioparser-dev_3.1.0-1.dsc -rw------- 1 jenkins jenkins 3230 Feb 23 03:52 rbuildlog.lCmFImx /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b1: total 1088 -rw-r--r-- 1 jenkins jenkins 45449 Feb 23 03:56 build.log -rw-r--r-- 1 jenkins jenkins 3108 Feb 23 03:56 libbioparser-dev_3.1.0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2066 Feb 23 03:56 libbioparser-dev_3.1.0-1.dsc -rw-r--r-- 1 jenkins jenkins 9120 Feb 23 03:56 libbioparser-dev_3.1.0-1_all.deb -rw-r--r-- 1 jenkins jenkins 5750 Feb 23 03:56 libbioparser-dev_3.1.0-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6632 Feb 23 03:56 libbioparser-dev_3.1.0-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1296 Feb 23 03:56 libbioparser-dev_3.1.0-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1753 Feb 23 03:56 libbioparser-dev_3.1.0-1_source.changes -rw-r--r-- 1 jenkins jenkins 1016738 Feb 23 03:56 libbioparser-dev_3.1.0.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b2: total 0 Sun Feb 23 03:56:08 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 22 15:52:53 -12 2025 I: pbuilder-time-stamp: 1740282773 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbioparser-dev_3.1.0-1.dsc] I: copying [./libbioparser-dev_3.1.0.orig.tar.gz] I: copying [./libbioparser-dev_3.1.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbioparser-dev_3.1.0-1.dsc: unsupported subcommand dpkg-source: info: extracting libbioparser-dev in libbioparser-dev-3.1.0 dpkg-source: info: unpacking libbioparser-dev_3.1.0.orig.tar.gz dpkg-source: info: unpacking libbioparser-dev_3.1.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3470837/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='fbea10b697824de7b6c2decfa4be5bde' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3470837' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/pbuilderrc_3OSk --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b1 --logfile b1/build.log libbioparser-dev_3.1.0-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3470837/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libgtest-dev, libbiosoup-dev (>> 0.11.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbiosoup-dev (>> 0.11.0); however: Package libbiosoup-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbiosoup-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 42.4 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 42.4 MB in 3s (14.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-3_amd64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.5-2_all.deb ... Unpacking cmake-data (3.31.5-2) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../18-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.21.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.21.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.21.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../28-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../29-libidn2-0_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbioparser-dev-3.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbioparser-dev_3.1.0-1_source.changes dpkg-buildpackage: info: source package libbioparser-dev dpkg-buildpackage: info: source version 3.1.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_auto_configure -- -Dbioparser_build_tests=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dbioparser_build_tests=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found suitable version "1.3.1", minimum required is "1.2.8") -- Configuring done (5.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.1.0 -B/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/depend make[3]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbioparser-dev-3.1.0 /build/reproducible-path/libbioparser-dev-3.1.0 /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles/bioparser_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/build make[3]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' [ 14%] Building CXX object CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/paf_parser_test.cpp [ 28%] Building CXX object CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o [ 42%] Building CXX object CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/fasta_parser_test.cpp [ 57%] Building CXX object CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o [ 71%] Building CXX object CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o [ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/fastq_parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/mhap_parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/sam_parser_test.cpp [100%] Linking CXX executable bin/bioparser_test /usr/bin/cmake -E cmake_link_script CMakeFiles/bioparser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/bioparser_test.dir/link.d CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -o bin/bioparser_test /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' [100%] Built target bioparser_test make[2]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' set -e -x; for f in obj-*/bin/*_test; do [ ! -x $f ] || $f; done + [ ! -x obj-x86_64-linux-gnu/bin/bioparser_test ] + obj-x86_64-linux-gnu/bin/bioparser_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 35 tests from 6 test suites. [----------] Global test environment set-up. [----------] 1 test from BioparserParserTest [ RUN ] BioparserParserTest.Create [ OK ] BioparserParserTest.Create (4 ms) [----------] 1 test from BioparserParserTest (8 ms total) [----------] 10 tests from BioparserFastaTest [ RUN ] BioparserFastaTest.ParseWhole [ OK ] BioparserFastaTest.ParseWhole (12 ms) [ RUN ] BioparserFastaTest.ParseWholeWithoutTrimming [ OK ] BioparserFastaTest.ParseWholeWithoutTrimming (4 ms) [ RUN ] BioparserFastaTest.ParseInChunks [ OK ] BioparserFastaTest.ParseInChunks (9 ms) [ RUN ] BioparserFastaTest.FormatError [ OK ] BioparserFastaTest.FormatError (2 ms) [ RUN ] BioparserFastaTest.ParseAndReset [ OK ] BioparserFastaTest.ParseAndReset (2 ms) [ RUN ] BioparserFastaTest.CompressedParseWhole [ OK ] BioparserFastaTest.CompressedParseWhole (236 ms) [ RUN ] BioparserFastaTest.CompressedParseWholeWithoutTrimming [ OK ] BioparserFastaTest.CompressedParseWholeWithoutTrimming (2 ms) [ RUN ] BioparserFastaTest.CompressedParseInChunks [ OK ] BioparserFastaTest.CompressedParseInChunks (2 ms) [ RUN ] BioparserFastaTest.CompressedParseAndReset [ OK ] BioparserFastaTest.CompressedParseAndReset (11 ms) [ RUN ] BioparserFastaTest.CompressedFormatError [ OK ] BioparserFastaTest.CompressedFormatError (8 ms) [----------] 10 tests from BioparserFastaTest (306 ms total) [----------] 6 tests from BioparserFastqTest [ RUN ] BioparserFastqTest.ParseWhole [ OK ] BioparserFastqTest.ParseWhole (2 ms) [ RUN ] BioparserFastqTest.ParseInChunks [ OK ] BioparserFastqTest.ParseInChunks (2 ms) [ RUN ] BioparserFastqTest.FormatError [ OK ] BioparserFastqTest.FormatError (1 ms) [ RUN ] BioparserFastqTest.CompressedParseWhole [ OK ] BioparserFastqTest.CompressedParseWhole (4 ms) [ RUN ] BioparserFastqTest.CompressedParseInChunks [ OK ] BioparserFastqTest.CompressedParseInChunks (4 ms) [ RUN ] BioparserFastqTest.CompressedFormatError [ OK ] BioparserFastqTest.CompressedFormatError (2 ms) [----------] 6 tests from BioparserFastqTest (29 ms total) [----------] 6 tests from BioparserMhapTest [ RUN ] BioparserMhapTest.ParseWhole [ OK ] BioparserMhapTest.ParseWhole (7 ms) [ RUN ] BioparserMhapTest.ParseInChunks [ OK ] BioparserMhapTest.ParseInChunks (0 ms) [ RUN ] BioparserMhapTest.FormatError [ OK ] BioparserMhapTest.FormatError (7 ms) [ RUN ] BioparserMhapTest.CompressedParseWhole [ OK ] BioparserMhapTest.CompressedParseWhole (3 ms) [ RUN ] BioparserMhapTest.CompressedParseInChunks [ OK ] BioparserMhapTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserMhapTest.CompressedFormatError [ OK ] BioparserMhapTest.CompressedFormatError (2 ms) [----------] 6 tests from BioparserMhapTest (24 ms total) [----------] 6 tests from BioparserPafTest [ RUN ] BioparserPafTest.ParseWhole [ OK ] BioparserPafTest.ParseWhole (1 ms) [ RUN ] BioparserPafTest.ParseInChunks [ OK ] BioparserPafTest.ParseInChunks (1 ms) [ RUN ] BioparserPafTest.FormatError [ OK ] BioparserPafTest.FormatError (0 ms) [ RUN ] BioparserPafTest.CompressedParseWhole [ OK ] BioparserPafTest.CompressedParseWhole (1 ms) [ RUN ] BioparserPafTest.CompressedParseInChunks [ OK ] BioparserPafTest.CompressedParseInChunks (1 ms) [ RUN ] BioparserPafTest.CompressedFormatError [ OK ] BioparserPafTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserPafTest (27 ms total) [----------] 6 tests from BioparserSamTest [ RUN ] BioparserSamTest.ParseWhole [ OK ] BioparserSamTest.ParseWhole (3 ms) [ RUN ] BioparserSamTest.ParseInChunks [ OK ] BioparserSamTest.ParseInChunks (3 ms) [ RUN ] BioparserSamTest.FormatError [ OK ] BioparserSamTest.FormatError (0 ms) [ RUN ] BioparserSamTest.CompressedParseWhole [ OK ] BioparserSamTest.CompressedParseWhole (38 ms) [ RUN ] BioparserSamTest.CompressedParseInChunks [ OK ] BioparserSamTest.CompressedParseInChunks (34 ms) [ RUN ] BioparserSamTest.CompressedFormatError [ OK ] BioparserSamTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserSamTest (91 ms total) [----------] Global test environment tear-down [==========] 35 tests from 6 test suites ran. (488 ms total) [ PASSED ] 35 tests. make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbioparser-dev/ cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.1.0 -B/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/sam_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fasta_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/mhap_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/paf_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fastq_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserTargets.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfig.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfigVersion.cmake make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' dh_install debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' mv debian/`dh_listpackages`/usr/lib/*/cmake debian/`dh_listpackages`/usr/share rm -rf debian/`dh_listpackages`/usr/lib find debian -name meson.build -delete make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbioparser-dev' in '../libbioparser-dev_3.1.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../libbioparser-dev_3.1.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libbioparser-dev_3.1.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3470837 and its subdirectories I: Current time: Sat Feb 22 15:56:07 -12 2025 I: pbuilder-time-stamp: 1740282967 Sun Feb 23 03:56:09 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun Feb 23 03:56:09 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun Feb 23 03:56:09 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Sun Feb 23 03:56:09 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Pg7EJ2' ==================================================================================== Sat Mar 28 10:19:09 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "2 libbioparser-dev trixie /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO 3.1.0-1" as arguments. Sat Mar 28 10:19:09 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-RuCvOB0v" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Mar 28 10:19:09 UTC 2026 I: Downloading source for trixie/libbioparser-dev=3.1.0-1 Reading package lists... NOTICE: 'libbioparser-dev' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbioparser-dev.git Please use: git clone https://salsa.debian.org/med-team/libbioparser-dev.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1022 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (dsc) [2066 B] Get:2 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (tar) [1017 kB] Get:3 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (diff) [3108 B] Fetched 1022 kB in 0s (10.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbioparser-dev' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbioparser-dev.git Please use: git clone https://salsa.debian.org/med-team/libbioparser-dev.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1022 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (dsc) [2066 B] Get:2 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (tar) [1017 kB] Get:3 http://deb.debian.org/debian trixie/main libbioparser-dev 3.1.0-1 (diff) [3108 B] Fetched 1022 kB in 0s (10.3 MB/s) Download complete and in download only mode ============================================================================= Re-Building libbioparser-dev in trixie on amd64 on ionos5-amd64 now. Date: Sat Mar 28 10:19:09 UTC 2026 Date UTC: Sat Mar 28 10:19:09 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/pbuilderrc_6lmY + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libbioparser-dev = debian-installer -o libbioparser-dev = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libbioparser-dev = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/pbuilderrc_6lmY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b2 --logfile b2/build.log libbioparser-dev_3.1.0-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Mar 29 00:19:10 +14 2026 I: pbuilder-time-stamp: 1774693150 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbioparser-dev_3.1.0-1.dsc] I: copying [./libbioparser-dev_3.1.0.orig.tar.gz] I: copying [./libbioparser-dev_3.1.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbioparser-dev_3.1.0-1.dsc: unsupported subcommand dpkg-source: info: extracting libbioparser-dev in libbioparser-dev-3.1.0 dpkg-source: info: unpacking libbioparser-dev_3.1.0.orig.tar.gz dpkg-source: info: unpacking libbioparser-dev_3.1.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/409672/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 28 10:19 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/409672/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/409672/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=5a64f08fff5e4e3785105f489a2d29a4 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=409672 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/pbuilderrc_6lmY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b2 --logfile b2/build.log libbioparser-dev_3.1.0-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/409672/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libgtest-dev, libbiosoup-dev (>> 0.11.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbiosoup-dev (>> 0.11.0); however: Package libbiosoup-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbiosoup-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 42.4 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 42.4 MB in 0s (88.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-3_amd64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.5-2_all.deb ... Unpacking cmake-data (3.31.5-2) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../18-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.21.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.21.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.21.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../28-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../29-libidn2-0_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../32-libldap2_2.6.9+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../33-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../34-libnghttp3-9_1.6.0-2_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.6.0-2) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../35-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../36-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../37-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../38-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../39-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../40-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../41-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../42-libcurl4t64_8.12.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.12.1-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../43-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../44-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../45-librhash1_1.4.5-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../46-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../47-cmake_3.31.5-2_amd64.deb ... Unpacking cmake (3.31.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../48-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../49-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../50-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../51-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../52-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../53-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../54-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../55-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../56-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../57-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../58-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../59-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package googletest. Preparing to unpack .../60-googletest_1.16.0-1_all.deb ... Unpacking googletest (1.16.0-1) ... Selecting previously unselected package libbiosoup-dev. Preparing to unpack .../61-libbiosoup-dev_0.11.0-2_all.deb ... Unpacking libbiosoup-dev (0.11.0-2) ... Selecting previously unselected package libgtest-dev:amd64. Preparing to unpack .../62-libgtest-dev_1.16.0-1_amd64.deb ... Unpacking libgtest-dev:amd64 (1.16.0-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../63-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up googletest (1.16.0-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libbiosoup-dev (0.11.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.5-2) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgtest-dev:amd64 (1.16.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.5-2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/409672/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/409672/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbioparser-dev-3.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbioparser-dev_3.1.0-1_source.changes dpkg-buildpackage: info: source package libbioparser-dev dpkg-buildpackage: info: source version 3.1.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_auto_configure -- -Dbioparser_build_tests=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dbioparser_build_tests=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found suitable version "1.3.1", minimum required is "1.2.8") -- Configuring done (0.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.1.0 -B/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/depend make[3]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbioparser-dev-3.1.0 /build/reproducible-path/libbioparser-dev-3.1.0 /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles/bioparser_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/build make[3]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' [ 14%] Building CXX object CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o [ 28%] Building CXX object CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/parser_test.cpp [ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o [ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o [ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o [ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra 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-I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/fasta_parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/mhap_parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/paf_parser_test.cpp [100%] Linking CXX executable bin/bioparser_test /usr/bin/cmake -E cmake_link_script CMakeFiles/bioparser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/bioparser_test.dir/link.d CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -o bin/bioparser_test /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' [100%] Built target bioparser_test make[2]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' set -e -x; for f in obj-*/bin/*_test; do [ ! -x $f ] || $f; done + for f in obj-*/bin/*_test + '[' '!' -x obj-x86_64-linux-gnu/bin/bioparser_test ']' + obj-x86_64-linux-gnu/bin/bioparser_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 35 tests from 6 test suites. [----------] Global test environment set-up. [----------] 1 test from BioparserParserTest [ RUN ] BioparserParserTest.Create [ OK ] BioparserParserTest.Create (0 ms) [----------] 1 test from BioparserParserTest (0 ms total) [----------] 10 tests from BioparserFastaTest [ RUN ] BioparserFastaTest.ParseWhole [ OK ] BioparserFastaTest.ParseWhole (2 ms) [ RUN ] BioparserFastaTest.ParseWholeWithoutTrimming [ OK ] BioparserFastaTest.ParseWholeWithoutTrimming (2 ms) [ RUN ] BioparserFastaTest.ParseInChunks [ OK ] BioparserFastaTest.ParseInChunks (0 ms) [ RUN ] BioparserFastaTest.FormatError [ OK ] BioparserFastaTest.FormatError (0 ms) [ RUN ] BioparserFastaTest.ParseAndReset [ OK ] BioparserFastaTest.ParseAndReset (0 ms) [ RUN ] BioparserFastaTest.CompressedParseWhole [ OK ] BioparserFastaTest.CompressedParseWhole (0 ms) [ RUN ] BioparserFastaTest.CompressedParseWholeWithoutTrimming [ OK ] BioparserFastaTest.CompressedParseWholeWithoutTrimming (0 ms) [ RUN ] BioparserFastaTest.CompressedParseInChunks [ OK ] BioparserFastaTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserFastaTest.CompressedParseAndReset [ OK ] BioparserFastaTest.CompressedParseAndReset (1 ms) [ RUN ] BioparserFastaTest.CompressedFormatError [ OK ] BioparserFastaTest.CompressedFormatError (1 ms) [----------] 10 tests from BioparserFastaTest (13 ms total) [----------] 6 tests from BioparserFastqTest [ RUN ] BioparserFastqTest.ParseWhole [ OK ] BioparserFastqTest.ParseWhole (0 ms) [ RUN ] BioparserFastqTest.ParseInChunks [ OK ] BioparserFastqTest.ParseInChunks (0 ms) [ RUN ] BioparserFastqTest.FormatError [ OK ] BioparserFastqTest.FormatError (0 ms) [ RUN ] BioparserFastqTest.CompressedParseWhole [ OK ] BioparserFastqTest.CompressedParseWhole (1 ms) [ RUN ] BioparserFastqTest.CompressedParseInChunks [ OK ] BioparserFastqTest.CompressedParseInChunks (1 ms) [ RUN ] BioparserFastqTest.CompressedFormatError [ OK ] BioparserFastqTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserFastqTest (5 ms total) [----------] 6 tests from BioparserMhapTest [ RUN ] BioparserMhapTest.ParseWhole [ OK ] BioparserMhapTest.ParseWhole (0 ms) [ RUN ] BioparserMhapTest.ParseInChunks [ OK ] BioparserMhapTest.ParseInChunks (0 ms) [ RUN ] BioparserMhapTest.FormatError [ OK ] BioparserMhapTest.FormatError (0 ms) [ RUN ] BioparserMhapTest.CompressedParseWhole [ OK ] BioparserMhapTest.CompressedParseWhole (0 ms) [ RUN ] BioparserMhapTest.CompressedParseInChunks [ OK ] BioparserMhapTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserMhapTest.CompressedFormatError [ OK ] BioparserMhapTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserMhapTest (1 ms total) [----------] 6 tests from BioparserPafTest [ RUN ] BioparserPafTest.ParseWhole [ OK ] BioparserPafTest.ParseWhole (0 ms) [ RUN ] BioparserPafTest.ParseInChunks [ OK ] BioparserPafTest.ParseInChunks (0 ms) [ RUN ] BioparserPafTest.FormatError [ OK ] BioparserPafTest.FormatError (0 ms) [ RUN ] BioparserPafTest.CompressedParseWhole [ OK ] BioparserPafTest.CompressedParseWhole (0 ms) [ RUN ] BioparserPafTest.CompressedParseInChunks [ OK ] BioparserPafTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserPafTest.CompressedFormatError [ OK ] BioparserPafTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserPafTest (3 ms total) [----------] 6 tests from BioparserSamTest [ RUN ] BioparserSamTest.ParseWhole [ OK ] BioparserSamTest.ParseWhole (1 ms) [ RUN ] BioparserSamTest.ParseInChunks [ OK ] BioparserSamTest.ParseInChunks (1 ms) [ RUN ] BioparserSamTest.FormatError [ OK ] BioparserSamTest.FormatError (0 ms) [ RUN ] BioparserSamTest.CompressedParseWhole [ OK ] BioparserSamTest.CompressedParseWhole (8 ms) [ RUN ] BioparserSamTest.CompressedParseInChunks [ OK ] BioparserSamTest.CompressedParseInChunks (5 ms) [ RUN ] BioparserSamTest.CompressedFormatError [ OK ] BioparserSamTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserSamTest (16 ms total) [----------] Global test environment tear-down [==========] 35 tests from 6 test suites ran. (41 ms total) [ PASSED ] 35 tests. make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbioparser-dev/ cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.1.0 -B/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fasta_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fastq_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/sam_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/paf_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/mhap_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserTargets.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfig.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfigVersion.cmake make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' dh_install debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' mv debian/`dh_listpackages`/usr/lib/*/cmake debian/`dh_listpackages`/usr/share rm -rf debian/`dh_listpackages`/usr/lib find debian -name meson.build -delete make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbioparser-dev' in '../libbioparser-dev_3.1.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../libbioparser-dev_3.1.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libbioparser-dev_3.1.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/409672/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/409672/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/409672 and its subdirectories I: Current time: Sun Mar 29 00:19:42 +14 2026 I: pbuilder-time-stamp: 1774693182 + false + set +x Sat Mar 28 10:19:42 UTC 2026 I: Signing ./b2/libbioparser-dev_3.1.0-1_amd64.buildinfo as libbioparser-dev_3.1.0-1_amd64.buildinfo.asc Sat Mar 28 10:19:42 UTC 2026 I: Signed ./b2/libbioparser-dev_3.1.0-1_amd64.buildinfo as ./b2/libbioparser-dev_3.1.0-1_amd64.buildinfo.asc Sat Mar 28 10:19:42 UTC 2026 - build #2 for libbioparser-dev/trixie/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Sat Mar 28 10:19:42 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-RuCvOB0v, removing. /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO: total 60 drwxr-xr-x 2 jenkins jenkins 4096 Feb 23 03:56 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 23 03:56 b2 -rw-r--r-- 1 jenkins jenkins 2066 Mar 22 2024 libbioparser-dev_3.1.0-1.dsc -rw------- 1 jenkins jenkins 48966 Feb 23 03:56 rbuildlog.lCmFImx /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b1: total 1092 -rw-r--r-- 1 jenkins jenkins 45449 Feb 23 03:56 build.log -rw-r--r-- 1 jenkins jenkins 3108 Feb 23 03:56 libbioparser-dev_3.1.0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2066 Feb 23 03:56 libbioparser-dev_3.1.0-1.dsc -rw-r--r-- 1 jenkins jenkins 9120 Feb 23 03:56 libbioparser-dev_3.1.0-1_all.deb -rw-r--r-- 1 jenkins jenkins 5750 Feb 23 03:56 libbioparser-dev_3.1.0-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6632 Feb 23 03:56 libbioparser-dev_3.1.0-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1296 Feb 23 03:56 libbioparser-dev_3.1.0-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1753 Feb 23 03:56 libbioparser-dev_3.1.0-1_source.changes -rw-r--r-- 1 jenkins jenkins 1016738 Feb 23 03:56 libbioparser-dev_3.1.0.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b2: total 1088 -rw-r--r-- 1 jenkins jenkins 47402 Feb 23 03:56 build.log -rw-r--r-- 1 jenkins jenkins 3108 Feb 23 03:56 libbioparser-dev_3.1.0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2066 Feb 23 03:56 libbioparser-dev_3.1.0-1.dsc -rw-r--r-- 1 jenkins jenkins 9120 Feb 23 03:56 libbioparser-dev_3.1.0-1_all.deb -rw-r--r-- 1 jenkins jenkins 5759 Feb 23 03:56 libbioparser-dev_3.1.0-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6641 Feb 23 03:56 libbioparser-dev_3.1.0-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1296 Feb 23 03:56 libbioparser-dev_3.1.0-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1753 Feb 23 03:56 libbioparser-dev_3.1.0-1_source.changes -rw-r--r-- 1 jenkins jenkins 1016738 Feb 23 03:56 libbioparser-dev_3.1.0.orig.tar.gz Sun Feb 23 03:56:43 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun Feb 23 03:56:43 UTC 2025 I: libbioparser-dev_3.1.0-1_amd64.changes: Format: 1.8 Date: Fri, 22 Mar 2024 17:16:50 +0100 Source: libbioparser-dev Binary: libbioparser-dev Architecture: all Version: 3.1.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: libbioparser-dev - library for parsing several formats in bioinformatics Changes: libbioparser-dev (3.1.0-1) unstable; urgency=medium . * Team upload * New upstream version * d/control: needs at least version 0.11.0 of libbiosoup-dev. * d/rules: Don't install the Meson build file into /usr/include. * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 7d8f15c3949b3df0cabfaf43fa81b0f6de9addc0 9120 libbioparser-dev_3.1.0-1_all.deb 09f8cdb54941ead0098e089292b3823e3185d34a 5750 libbioparser-dev_3.1.0-1_amd64.buildinfo Checksums-Sha256: c665a147254eab4f75385325df0e764e4b578d669fa3793f452d0d0a523636de 9120 libbioparser-dev_3.1.0-1_all.deb 6df652ca5ad14560690fc4e53d0d4347ac654c926bcc4c882fe58ada04ee0027 5750 libbioparser-dev_3.1.0-1_amd64.buildinfo Files: bb5352219868e7d8bd896c3adafdef1f 9120 libdevel optional libbioparser-dev_3.1.0-1_all.deb e5c13e1a790dd0afd2038f033cce152d 5750 science optional libbioparser-dev_3.1.0-1_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbioparser-dev_3.1.0-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbioparser-dev_3.1.0-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/libbioparser-dev_3.1.0-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/libbioparser-dev_3.1.0-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/libbioparser-dev_3.1.0-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libbioparser-dev_3.1.0-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-23 03:56:08.385501642 +0000 +++ b2/build.log 2025-02-23 03:56:43.351922612 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Feb 22 15:52:53 -12 2025 -I: pbuilder-time-stamp: 1740282773 +I: Current time: Sun Mar 29 00:19:10 +14 2026 +I: pbuilder-time-stamp: 1774693150 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking libbioparser-dev_3.1.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3470837/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/409672/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 28 10:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/409672/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/409672/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='fbea10b697824de7b6c2decfa4be5bde' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3470837' - PS1='# ' - PS2='> ' + INVOCATION_ID=5a64f08fff5e4e3785105f489a2d29a4 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=409672 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/pbuilderrc_3OSk --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b1 --logfile b1/build.log libbioparser-dev_3.1.0-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/pbuilderrc_6lmY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b2 --logfile b2/build.log libbioparser-dev_3.1.0-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3470837/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/409672/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -80,7 +112,7 @@ Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libgtest-dev, libbiosoup-dev (>> 0.11.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19805 files and directories currently installed.) +(Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -175,10 +207,10 @@ Get: 62 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 42.4 MB in 3s (14.1 MB/s) +Fetched 42.4 MB in 0s (88.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. @@ -446,7 +478,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbioparser-dev-3.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbioparser-dev_3.1.0-1_source.changes +I: user script /srv/workspace/pbuilder/409672/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/409672/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbioparser-dev-3.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbioparser-dev_3.1.0-1_source.changes dpkg-buildpackage: info: source package libbioparser-dev dpkg-buildpackage: info: source version 3.1.0-1 dpkg-buildpackage: info: source distribution unstable @@ -471,8 +507,8 @@ -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found suitable version "1.3.1", minimum required is "1.2.8") --- Configuring done (5.0s) --- Generating done (0.1s) +-- Configuring done (0.4s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -484,7 +520,7 @@ -- Build files have been written to: /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.1.0 -B/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -496,18 +532,18 @@ make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/build make[3]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' -[ 14%] Building CXX object CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -/usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/paf_parser_test.cpp -[ 28%] Building CXX object CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -[ 42%] Building CXX object CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o +[ 14%] Building CXX object CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o +[ 28%] Building CXX object CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/parser_test.cpp -/usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/fasta_parser_test.cpp -[ 57%] Building CXX object CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -[ 71%] Building CXX object CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o +[ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o [ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o +[ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o +[ 85%] Building CXX object CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/fastq_parser_test.cpp -/usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/mhap_parser_test.cpp /usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/sam_parser_test.cpp +/usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/fasta_parser_test.cpp +/usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/mhap_parser_test.cpp +/usr/bin/c++ -I/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu -I/build/reproducible-path/libbioparser-dev-3.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -MF CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o.d -o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.1.0/test/paf_parser_test.cpp [100%] Linking CXX executable bin/bioparser_test /usr/bin/cmake -E cmake_link_script CMakeFiles/bioparser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbioparser-dev-3.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/bioparser_test.dir/link.d CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -o bin/bioparser_test /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a @@ -519,107 +555,108 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0' set -e -x; for f in obj-*/bin/*_test; do [ ! -x $f ] || $f; done -+ [ ! -x obj-x86_64-linux-gnu/bin/bioparser_test ] ++ for f in obj-*/bin/*_test ++ '[' '!' -x obj-x86_64-linux-gnu/bin/bioparser_test ']' + obj-x86_64-linux-gnu/bin/bioparser_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 35 tests from 6 test suites. [----------] Global test environment set-up. [----------] 1 test from BioparserParserTest [ RUN ] BioparserParserTest.Create -[ OK ] BioparserParserTest.Create (4 ms) -[----------] 1 test from BioparserParserTest (8 ms total) +[ OK ] BioparserParserTest.Create (0 ms) +[----------] 1 test from BioparserParserTest (0 ms total) [----------] 10 tests from BioparserFastaTest [ RUN ] BioparserFastaTest.ParseWhole -[ OK ] BioparserFastaTest.ParseWhole (12 ms) +[ OK ] BioparserFastaTest.ParseWhole (2 ms) [ RUN ] BioparserFastaTest.ParseWholeWithoutTrimming -[ OK ] BioparserFastaTest.ParseWholeWithoutTrimming (4 ms) +[ OK ] BioparserFastaTest.ParseWholeWithoutTrimming (2 ms) [ RUN ] BioparserFastaTest.ParseInChunks -[ OK ] BioparserFastaTest.ParseInChunks (9 ms) +[ OK ] BioparserFastaTest.ParseInChunks (0 ms) [ RUN ] BioparserFastaTest.FormatError -[ OK ] BioparserFastaTest.FormatError (2 ms) +[ OK ] BioparserFastaTest.FormatError (0 ms) [ RUN ] BioparserFastaTest.ParseAndReset -[ OK ] BioparserFastaTest.ParseAndReset (2 ms) +[ OK ] BioparserFastaTest.ParseAndReset (0 ms) [ RUN ] BioparserFastaTest.CompressedParseWhole -[ OK ] BioparserFastaTest.CompressedParseWhole (236 ms) +[ OK ] BioparserFastaTest.CompressedParseWhole (0 ms) [ RUN ] BioparserFastaTest.CompressedParseWholeWithoutTrimming -[ OK ] BioparserFastaTest.CompressedParseWholeWithoutTrimming (2 ms) +[ OK ] BioparserFastaTest.CompressedParseWholeWithoutTrimming (0 ms) [ RUN ] BioparserFastaTest.CompressedParseInChunks -[ OK ] BioparserFastaTest.CompressedParseInChunks (2 ms) +[ OK ] BioparserFastaTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserFastaTest.CompressedParseAndReset -[ OK ] BioparserFastaTest.CompressedParseAndReset (11 ms) +[ OK ] BioparserFastaTest.CompressedParseAndReset (1 ms) [ RUN ] BioparserFastaTest.CompressedFormatError -[ OK ] BioparserFastaTest.CompressedFormatError (8 ms) -[----------] 10 tests from BioparserFastaTest (306 ms total) +[ OK ] BioparserFastaTest.CompressedFormatError (1 ms) +[----------] 10 tests from BioparserFastaTest (13 ms total) [----------] 6 tests from BioparserFastqTest [ RUN ] BioparserFastqTest.ParseWhole -[ OK ] BioparserFastqTest.ParseWhole (2 ms) +[ OK ] BioparserFastqTest.ParseWhole (0 ms) [ RUN ] BioparserFastqTest.ParseInChunks -[ OK ] BioparserFastqTest.ParseInChunks (2 ms) +[ OK ] BioparserFastqTest.ParseInChunks (0 ms) [ RUN ] BioparserFastqTest.FormatError -[ OK ] BioparserFastqTest.FormatError (1 ms) +[ OK ] BioparserFastqTest.FormatError (0 ms) [ RUN ] BioparserFastqTest.CompressedParseWhole -[ OK ] BioparserFastqTest.CompressedParseWhole (4 ms) +[ OK ] BioparserFastqTest.CompressedParseWhole (1 ms) [ RUN ] BioparserFastqTest.CompressedParseInChunks -[ OK ] BioparserFastqTest.CompressedParseInChunks (4 ms) +[ OK ] BioparserFastqTest.CompressedParseInChunks (1 ms) [ RUN ] BioparserFastqTest.CompressedFormatError -[ OK ] BioparserFastqTest.CompressedFormatError (2 ms) -[----------] 6 tests from BioparserFastqTest (29 ms total) +[ OK ] BioparserFastqTest.CompressedFormatError (0 ms) +[----------] 6 tests from BioparserFastqTest (5 ms total) [----------] 6 tests from BioparserMhapTest [ RUN ] BioparserMhapTest.ParseWhole -[ OK ] BioparserMhapTest.ParseWhole (7 ms) +[ OK ] BioparserMhapTest.ParseWhole (0 ms) [ RUN ] BioparserMhapTest.ParseInChunks [ OK ] BioparserMhapTest.ParseInChunks (0 ms) [ RUN ] BioparserMhapTest.FormatError -[ OK ] BioparserMhapTest.FormatError (7 ms) +[ OK ] BioparserMhapTest.FormatError (0 ms) [ RUN ] BioparserMhapTest.CompressedParseWhole -[ OK ] BioparserMhapTest.CompressedParseWhole (3 ms) +[ OK ] BioparserMhapTest.CompressedParseWhole (0 ms) [ RUN ] BioparserMhapTest.CompressedParseInChunks [ OK ] BioparserMhapTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserMhapTest.CompressedFormatError -[ OK ] BioparserMhapTest.CompressedFormatError (2 ms) -[----------] 6 tests from BioparserMhapTest (24 ms total) +[ OK ] BioparserMhapTest.CompressedFormatError (0 ms) +[----------] 6 tests from BioparserMhapTest (1 ms total) [----------] 6 tests from BioparserPafTest [ RUN ] BioparserPafTest.ParseWhole -[ OK ] BioparserPafTest.ParseWhole (1 ms) +[ OK ] BioparserPafTest.ParseWhole (0 ms) [ RUN ] BioparserPafTest.ParseInChunks -[ OK ] BioparserPafTest.ParseInChunks (1 ms) +[ OK ] BioparserPafTest.ParseInChunks (0 ms) [ RUN ] BioparserPafTest.FormatError [ OK ] BioparserPafTest.FormatError (0 ms) [ RUN ] BioparserPafTest.CompressedParseWhole -[ OK ] BioparserPafTest.CompressedParseWhole (1 ms) +[ OK ] BioparserPafTest.CompressedParseWhole (0 ms) [ RUN ] BioparserPafTest.CompressedParseInChunks -[ OK ] BioparserPafTest.CompressedParseInChunks (1 ms) +[ OK ] BioparserPafTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserPafTest.CompressedFormatError [ OK ] BioparserPafTest.CompressedFormatError (0 ms) -[----------] 6 tests from BioparserPafTest (27 ms total) +[----------] 6 tests from BioparserPafTest (3 ms total) [----------] 6 tests from BioparserSamTest [ RUN ] BioparserSamTest.ParseWhole -[ OK ] BioparserSamTest.ParseWhole (3 ms) +[ OK ] BioparserSamTest.ParseWhole (1 ms) [ RUN ] BioparserSamTest.ParseInChunks -[ OK ] BioparserSamTest.ParseInChunks (3 ms) +[ OK ] BioparserSamTest.ParseInChunks (1 ms) [ RUN ] BioparserSamTest.FormatError [ OK ] BioparserSamTest.FormatError (0 ms) [ RUN ] BioparserSamTest.CompressedParseWhole -[ OK ] BioparserSamTest.CompressedParseWhole (38 ms) +[ OK ] BioparserSamTest.CompressedParseWhole (8 ms) [ RUN ] BioparserSamTest.CompressedParseInChunks -[ OK ] BioparserSamTest.CompressedParseInChunks (34 ms) +[ OK ] BioparserSamTest.CompressedParseInChunks (5 ms) [ RUN ] BioparserSamTest.CompressedFormatError [ OK ] BioparserSamTest.CompressedFormatError (0 ms) -[----------] 6 tests from BioparserSamTest (91 ms total) +[----------] 6 tests from BioparserSamTest (16 ms total) [----------] Global test environment tear-down -[==========] 35 tests from 6 test suites ran. (488 ms total) +[==========] 35 tests from 6 test suites ran. (41 ms total) [ PASSED ] 35 tests. make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.1.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbioparser-dev/ - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.1.0 -B/build/reproducible-path/libbioparser-dev-3.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -630,12 +667,12 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser --- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/sam_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fasta_parser.hpp --- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/mhap_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/parser.hpp --- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/paf_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/fastq_parser.hpp +-- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/sam_parser.hpp +-- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/paf_parser.hpp +-- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/include/bioparser/mhap_parser.hpp -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserTargets.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfig.cmake -- Installing: /build/reproducible-path/libbioparser-dev-3.1.0/debian/libbioparser-dev/usr/lib/x86_64-linux-gnu/cmake/bioparser/bioparserConfigVersion.cmake @@ -667,12 +704,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/409672/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/409672/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3470837 and its subdirectories -I: Current time: Sat Feb 22 15:56:07 -12 2025 -I: pbuilder-time-stamp: 1740282967 +I: removing directory /srv/workspace/pbuilder/409672 and its subdirectories +I: Current time: Sun Mar 29 00:19:42 +14 2026 +I: pbuilder-time-stamp: 1774693182 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libbioparser-dev_3.1.0-1.diff: 81.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libbioparser-dev_3.1.0-1.diff.gz b2/build.log: 80.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.1% -- replaced with stdout Sun Feb 23 03:56:45 UTC 2025 I: diffoscope 289 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libbioparser-dev_trixie_amd64_1740283005 + touch /var/log/reproducible-builds/diffoscope_stamp_libbioparser-dev_trixie_amd64_1740283005 + RESULT=0 + systemd-run '--description=diffoscope on libbioparser-dev/3.1.0-1 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_13-33200 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO --run-session -c jenkins-reproducible-trixie-diffoscope-d4fc7746-a509-4614-9698-bcc1d888cb9b -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/dbd-tmp-swcFJMM ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/libbioparser-dev_3.1.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/libbioparser-dev_3.1.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/libbioparser-dev_3.1.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b1/libbioparser-dev_3.1.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b2/libbioparser-dev_3.1.0-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_13-33200.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/libbioparser-dev_3.1.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/libbioparser-dev_3.1.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/libbioparser-dev_3.1.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b1/libbioparser-dev_3.1.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.l87WizBO/b2/libbioparser-dev_3.1.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 224ms CPU time consumed: 224ms _ _ _ _ _ _ | (_) |__ | |__ (_) ___ _ __ __ _ _ __ ___ ___ _ __ __| | _____ __ | | | '_ \| '_ \| |/ _ \| '_ \ / _` | '__/ __|/ _ \ '__|____ / _` |/ _ \ \ / / | | | |_) | |_) | | (_) | |_) | (_| | | \__ \ __/ | |_____| (_| | __/\ V / |_|_|_.__/|_.__/|_|\___/| .__/ \__,_|_| |___/\___|_| \__,_|\___| \_/ |_| Sun Feb 23 03:56:45 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sun Feb 23 03:56:45 UTC 2025 I: libbioparser-dev from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-23 03:56:46] INFO: Starting at 2025-02-23 03:56:46.236920 [2025-02-23 03:56:46] INFO: Generating the pages of 1 package(s) [2025-02-23 03:56:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/libbioparser-dev_3.1.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/libbioparser-dev_3.1.0-1.diff.gz is missing [2025-02-23 03:56:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/libbioparser-dev_3.1.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/libbioparser-dev_3.1.0-1.diff.gz is missing [2025-02-23 03:56:46] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/libbioparser-dev didn't produce a buildlog, even though it has been built. [2025-02-23 03:56:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/libbioparser-dev_3.1.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/libbioparser-dev_3.1.0-1.diff.gz is missing [2025-02-23 03:56:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/libbioparser-dev_3.1.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/libbioparser-dev_3.1.0-1.diff.gz is missing [2025-02-23 03:56:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/libbioparser-dev_3.0.15-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/libbioparser-dev_3.0.15-3.diff.gz is missing [2025-02-23 03:56:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/libbioparser-dev_3.0.15-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/libbioparser-dev_3.0.15-3.diff.gz is missing [2025-02-23 03:56:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/libbioparser-dev_3.0.12-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/libbioparser-dev_3.0.12-1.diff.gz is missing [2025-02-23 03:56:46] INFO: Finished at 2025-02-23 03:56:46.707058, took: 0:00:00.470146 Sun Feb 23 03:56:46 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/libbioparser-dev.html Sun Feb 23 03:56:46 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Feb 23 03:56:46 UTC 2025 I: Submitting 8.0K b1/libbioparser-dev_3.1.0-1_amd64.buildinfo.asc https://buildinfo.debian.net/09f8cdb54941ead0098e089292b3823e3185d34a/libbioparser-dev_3.1.0-1_all Sun Feb 23 03:56:47 UTC 2025 I: Submitting 8.0K b2/libbioparser-dev_3.1.0-1_amd64.buildinfo.asc https://buildinfo.debian.net/b453cddc61875a02cd017307fecb3a6bb0f24605/libbioparser-dev_3.1.0-1_all Sun Feb 23 03:56:48 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Feb 23 03:56:48 UTC 2025 I: Done submitting .buildinfo files. Sun Feb 23 03:56:48 UTC 2025 I: Removing signed libbioparser-dev_3.1.0-1_amd64.buildinfo.asc files: removed './b1/libbioparser-dev_3.1.0-1_amd64.buildinfo.asc' removed './b2/libbioparser-dev_3.1.0-1_amd64.buildinfo.asc' 1740283008 amd64 trixie libbioparser-dev Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbioparser-dev_3.1.0-1.rbuild.log: 78.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbioparser-dev_3.1.0-1.rbuild.log.gz [2025-02-23 03:56:49] INFO: Starting at 2025-02-23 03:56:49.204002 [2025-02-23 03:56:49] INFO: Generating the pages of 1 package(s) [2025-02-23 03:56:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/libbioparser-dev_3.1.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/libbioparser-dev_3.1.0-1.diff.gz is missing [2025-02-23 03:56:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/libbioparser-dev_3.1.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/libbioparser-dev_3.1.0-1.diff.gz is missing [2025-02-23 03:56:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/libbioparser-dev_3.1.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/libbioparser-dev_3.1.0-1.diff.gz is missing [2025-02-23 03:56:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/libbioparser-dev_3.1.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/libbioparser-dev_3.1.0-1.diff.gz is missing [2025-02-23 03:56:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/libbioparser-dev_3.0.15-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/libbioparser-dev_3.0.15-3.diff.gz is missing [2025-02-23 03:56:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/libbioparser-dev_3.0.15-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/libbioparser-dev_3.0.15-3.diff.gz is missing [2025-02-23 03:56:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/libbioparser-dev_3.0.12-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/libbioparser-dev_3.0.12-1.diff.gz is missing [2025-02-23 03:56:49] INFO: Finished at 2025-02-23 03:56:49.675780, took: 0:00:00.471782 All cleanup done. Sun Feb 23 03:56:49 UTC 2025 - total duration: 0h 4m 18s. Sun Feb 23 03:56:49 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-pFoNO93O, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 4min 22.470s CPU time consumed: 7.499s