Running as unit: rb-build-amd64_14-24194.service ==================================================================================== Thu Nov 21 01:05:30 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_14) on jenkins, called using "ionos5-amd64 ionos11-amd64" as arguments. Thu Nov 21 01:05:30 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ga8rVf1Z" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 01:05:31 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Nov 21 01:05:31 UTC 2024 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-owe271' Thu Nov 21 01:05:32 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Nov 21 01:05:32 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-MvG4TQ' ok, let's check if libgo-perl is building anywhere yet… ok, libgo-perl is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libgo-perl in trixie on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Thu Nov 21 01:05:49 UTC 2024 I: starting to build libgo-perl/trixie/amd64 on jenkins on '2024-11-21 01:05' Thu Nov 21 01:05:49 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/24194/console.log 1732151149 amd64 trixie libgo-perl Thu Nov 21 01:05:49 UTC 2024 I: Downloading source for trixie/libgo-perl=0.15-10 --2024-11-21 01:05:50-- http://deb.debian.org/debian/pool/main/libg/libgo-perl/libgo-perl_0.15-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2285 (2.2K) [text/prs.lines.tag] Saving to: ‘libgo-perl_0.15-10.dsc’ 0K .. 100% 303M=0s 2024-11-21 01:05:50 (303 MB/s) - ‘libgo-perl_0.15-10.dsc’ saved [2285/2285] --2024-11-21 01:05:50-- http://deb.debian.org/debian/pool/main/libg/libgo-perl/libgo-perl_0.15-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2285 (2.2K) [text/prs.lines.tag] Saving to: ‘libgo-perl_0.15-10.dsc’ 0K .. 100% 303M=0s 2024-11-21 01:05:50 (303 MB/s) - ‘libgo-perl_0.15-10.dsc’ saved [2285/2285] Thu Nov 21 01:05:50 UTC 2024 I: libgo-perl_0.15-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgo-perl Binary: libgo-perl Architecture: all Version: 0.15-10 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://geneontology.sourceforge.net/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libgo-perl Vcs-Git: https://salsa.debian.org/med-team/libgo-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename Package-List: libgo-perl deb perl optional arch=all Checksums-Sha1: 33ba8273c06a300c0deae61db852591920f29201 808993 libgo-perl_0.15.orig.tar.gz 6d510867e1f3b50aab3495710c3212c5469f22af 8476 libgo-perl_0.15-10.debian.tar.xz Checksums-Sha256: 423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12 808993 libgo-perl_0.15.orig.tar.gz c49402ebbe8c2c76fc24a2921fb737af511be832cb700255e710523fec7b0a6f 8476 libgo-perl_0.15-10.debian.tar.xz Files: f4fb4f051821a836047e528303db585d 808993 libgo-perl_0.15.orig.tar.gz 9744fdd64086b2a52eee5c854450b554 8476 libgo-perl_0.15-10.debian.tar.xz Dgit: 700ac887dee8352752338ea54679626b6554a4e4 debian archive/debian/0.15-10 https://git.dgit.debian.org/libgo-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWAKREUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdptDhAAn/K6hKrc8ka5VJYHPubwnVxENCyD WEkaWNmu/SaKeH2xvI68ajDq8OdHRhWOjhByOVLvvx3CvCI80dnb00P34/2JXUNn 9Mh+hwXJs+H3jxZjyOENT77OSYM8fYLFanvr0cxRM4FyZ6ivhoc8f7Z2MG6xzUaE PDjjZnuZeluy48NniGElTkxX8Zqkrytk3JL4lIsXkKA28Q1JfIG+SLE4hR8vOvLF K7lnWFVWjUF98iMvevY5BzDd3fdzhSgT7wnaZFAgS3wixy+JdE+rc4aS/MwBJbre qZlnJTNmm2DPkpCzL/pT8HuxW0tM9xaj2sOvXk61Tvga+d0Zjx67R6aPamhzLAL4 e+QG+FU7BEw88GqkIMFNHUHLdEL4squNOxyjbe4teOwZlzM0fRW0lzDzBNGQ1jFc eKF6Mx/P5HUUufqwYiDtDEm/b8Dffnz0bHqv1A2x1h9Mk0Ab8dAVZ+wzGI7XueY7 9ixhC8bWEWY7I5069CpIIE/sQCFEEx5DushjN8NafqVjvGiml2b9v+Qv8ljygypd qOZ7f7jSokYHwHcsDNbCeOfUPRXBSmoC+L1iigwzUUDUQeB7jAexafmsDAh5U1xZ LP7/mbLn6GmKgqIS8KI3THedkZmfkv/WrESUG75XnYhXjNkkpxyg6cdZH5T7WduN v/jrjYXHhoRoHhA= =6iS3 -----END PGP SIGNATURE----- Thu Nov 21 01:05:50 UTC 2024 I: Checking whether the package is not for us Thu Nov 21 01:05:50 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu Nov 21 01:05:50 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu Nov 21 01:05:50 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Nov 21 01:05:50 UTC 2024 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-BgaTM7' ==================================================================================== Wed Dec 24 07:28:51 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 libgo-perl trixie /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah 0.15-10" as arguments. Wed Dec 24 07:28:51 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-9lz8knza" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Dec 24 07:28:51 UTC 2025 I: Downloading source for trixie/libgo-perl=0.15-10 Reading package lists... NOTICE: 'libgo-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgo-perl.git Please use: git clone https://salsa.debian.org/med-team/libgo-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 820 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (dsc) [2285 B] Get:2 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (tar) [809 kB] Get:3 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (diff) [8476 B] Fetched 820 kB in 0s (10.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libgo-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgo-perl.git Please use: git clone https://salsa.debian.org/med-team/libgo-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 820 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (dsc) [2285 B] Get:2 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (tar) [809 kB] Get:3 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (diff) [8476 B] Fetched 820 kB in 0s (10.2 MB/s) Download complete and in download only mode ============================================================================= Building libgo-perl in trixie on amd64 on ionos5-amd64 now. Date: Wed Dec 24 07:28:57 UTC 2025 Date UTC: Wed Dec 24 07:28:57 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 23 19:28:57 -12 2025 I: pbuilder-time-stamp: 1766561337 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgo-perl_0.15-10.dsc] I: copying [./libgo-perl_0.15.orig.tar.gz] I: copying [./libgo-perl_0.15-10.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 18 11:12:17 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libgo-perl_0.15-10.dsc: no acceptable signature found dpkg-source: info: extracting libgo-perl in libgo-perl-0.15 dpkg-source: info: unpacking libgo-perl_0.15.orig.tar.gz dpkg-source: info: unpacking libgo-perl_0.15-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-whatis-entries.patch dpkg-source: info: applying fix-missing-manpages dpkg-source: info: applying fix-pod.patch dpkg-source: info: applying fix_test_xsltproc dpkg-source: info: applying fix_hash_in_go_io_dotty.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying spelling2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2162471/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='069d32cafe34441db2c5373527c94cc1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2162471' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/pbuilderrc_MGGg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b1 --logfile b1/build.log libgo-perl_0.15-10.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2162471/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdata-stag-perl; however: Package libdata-stag-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-libxslt-perl; however: Package libxml-libxslt-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-writer-perl; however: Package libxml-writer-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-checker-perl; however: Package libxml-checker-perl is not installed. pbuilder-satisfydepends-dummy depends on xsltproc; however: Package xsltproc is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-checker-perl{a} libxml-dom-perl{a} libxml-libxml-perl{a} libxml-libxslt-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml-regexp-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-writer-perl{a} libxml2{a} libxslt1.1{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} rename{a} sensible-utils{a} ucf{a} xsltproc{a} The following packages are RECOMMENDED but will NOT be installed: curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl lynx perl-tk wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 96.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 26 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 53 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libxml-checker-perl all 0.13-7 [40.6 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b1 [314 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libxml-libxslt-perl amd64 2.003000-2+b1 [47.9 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 rename all 2.02-1 [21.8 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 xsltproc amd64 1.1.35-1.1+b1 [115 kB] Fetched 27.4 MB in 26s (1065 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... 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Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../28-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../33-libio-string-perl_1.08-4_all.deb ... 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Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../40-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../41-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../42-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../43-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../44-libhtml-parser-perl_3.83-1+b1_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1+b1) ... Selecting previously unselected package libhtml-tree-perl. 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Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../51-perl-openssl-defaults_7+b2_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../52-libnet-ssleay-perl_1.94-2_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.94-2) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../53-libio-socket-ssl-perl_2.089-1_all.deb ... Unpacking libio-socket-ssl-perl (2.089-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../54-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../55-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../56-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../57-libwww-perl_6.77-1_all.deb ... Unpacking libwww-perl (6.77-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../58-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../59-libxml-parser-perl_2.47-1+b3_amd64.deb ... Unpacking libxml-parser-perl (2.47-1+b3) ... Selecting previously unselected package libxml-perl. Preparing to unpack .../60-libxml-perl_0.08-4_all.deb ... Unpacking libxml-perl (0.08-4) ... Selecting previously unselected package libxml-regexp-perl. Preparing to unpack .../61-libxml-regexp-perl_0.04-1.1_all.deb ... Unpacking libxml-regexp-perl (0.04-1.1) ... Selecting previously unselected package libxml-dom-perl. Preparing to unpack .../62-libxml-dom-perl_1.46-2_all.deb ... Unpacking libxml-dom-perl (1.46-2) ... Selecting previously unselected package libxml-checker-perl. Preparing to unpack .../63-libxml-checker-perl_0.13-7_all.deb ... Unpacking libxml-checker-perl (0.13-7) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../64-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../65-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../66-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../67-libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../68-libxslt1.1_1.1.35-1.1+b1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1.1+b1) ... Selecting previously unselected package libxml-libxslt-perl:amd64. Preparing to unpack .../69-libxml-libxslt-perl_2.003000-2+b1_amd64.deb ... Unpacking libxml-libxslt-perl:amd64 (2.003000-2+b1) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../70-libxml-writer-perl_0.900-2_all.deb ... Unpacking libxml-writer-perl (0.900-2) ... Selecting previously unselected package rename. Preparing to unpack .../71-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Selecting previously unselected package xsltproc. Preparing to unpack .../72-xsltproc_1.1.35-1.1+b1_amd64.deb ... Unpacking xsltproc (1.1.35-1.1+b1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.3.2-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up libnet-http-perl (6.23-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up xsltproc (1.1.35-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.20) ... Setting up libxml-libxslt-perl:amd64 (2.003000-2+b1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-perl (0.08-4) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libxml-checker-perl (0.13-7) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgo-perl_0.15-10_source.changes dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libgo-perl-0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libgo-perl-0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm cp GO/Basic.pm blib/lib/GO/Basic.pm cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm cp GO/Parser.pm blib/lib/GO/Parser.pm cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl cp GO/Utils.pm blib/lib/GO/Utils.pm cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl cp go-perl.pod blib/lib/go-perl.pod cp scripts/go-apply-xslt blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl cp scripts/go2chadoxml blib/script/go2chadoxml cp scripts/go2error_report blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore cp scripts/go2obo blib/script/go2obo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo cp scripts/go2obo_html blib/script/go2obo_html cp scripts/go2obo_text blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text cp scripts/go2obo_xml blib/script/go2obo_xml cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl cp scripts/go2pathlist blib/script/go2pathlist cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog cp scripts/go2rdf blib/script/go2rdf cp scripts/go2rdfxml blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf cp scripts/go2summary blib/script/go2summary cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2summary "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr cp scripts/go2tbl blib/script/go2tbl cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl cp scripts/go2xml blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' dh_auto_test make -j42 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:08 2025 # Current time GMT: Wed Dec 24 07:35:08 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t020paths.t ............ 1..7 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:09 2025 # Current time GMT: Wed Dec 24 07:35:09 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/t030detecterror.t ...... 1..4 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:09 2025 # Current time GMT: Wed Dec 24 07:35:09 2025 # Using Test.pm version 1.31 ok 1 ok 2 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 3 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 4 ok t/t050oboformat.t ........ 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:09 2025 # Current time GMT: Wed Dec 24 07:35:09 2025 # Using Test.pm version 1.31 ok 1 ok 2 ROOT: cellular_component ROOT: biological_process ROOT: molecular_function ok 3 ok 4 EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005935|GO:0000134|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003678|GO:0004386|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003708|GO:0004879|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0000133|GO:0005938|part_of EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0000144|GO:0030481|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0003904|GO:0003913|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003908|GO:0008172|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0005934|GO:0000134|is_a EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003707|GO:0004879|is_a EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0000142|GO:0030480|is_a EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003721|GO:0003964|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a total parent rels:118 total (both ways):218 ok 5 ok 6 ok t/t060oboformat2.t ....... 1..36 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:09 2025 # Current time GMT: Wed Dec 24 07:35:09 2025 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 ROOT: root ROOT: Part of ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 DEFXREFS:GO:jic EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:curators EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a SYNS:class I PI3K|FAKE:0001|fake synonym EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:curators EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042595|GO:0042594|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:GO:ai EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008344|GO:0007626|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ./t/data/go-truncated.obo from:obo_text to:obo_xml ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 ROOT: root ROOT: Part of ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a SYNS:fake synonym|FAKE:0001|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ./t/data/go-truncated.obo.obo_xml from:obo_xml to:obo_text ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: root ROOT: Part of TERMS: 29 DEFXREFS:GO:curators EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a SYNS:fake synonym|class I PI3K|FAKE:0001 EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:10 2025 # Current time GMT: Wed Dec 24 07:35:10 2025 # Using Test.pm version 1.31 ok 1 ok 2 TERM: GO:0003673 Gene_Ontology *DEEP: 86 TERM: GO:0008150 biological_process *DEEP: 52 TERM: GO:0007610 behavior *DEEP: 0 TERM: GO:0000004 biological_process unknown PROD: ziplock *DEEP: 1 TERM: GO:0007154 cell communication *DEEP: 3 TERM: GO:0008037 cell recognition *DEEP: 0 TERM: GO:0007267 cell-cell signaling *DEEP: 0 TERM: GO:0030383 host-pathogen interaction *DEEP: 0 TERM: GO:0009719 response to endogenous stimulus PROD: zip *DEEP: 1 TERM: GO:0009605 response to external stimulus *DEEP: 0 TERM: GO:0009628 response to abiotic stimulus *DEEP: 0 TERM: GO:0009607 response to biotic stimulus *DEEP: 0 TERM: GO:0007165 signal transduction PROD: zpg PROD: Zyx102EF *DEEP: 2 TERM: GO:0008151 cell growth and/or maintenance *DEEP: 18 TERM: GO:0007049 cell cycle PROD: zip PROD: zwilch *DEEP: 2 TERM: GO:0016049 cell growth *DEEP: 0 TERM: GO:0019725 cell homeostasis *DEEP: 0 TERM: GO:0016043 cell organization and biogenesis *DEEP: 3 TERM: GO:0007028 cytoplasm organization and biogenesis *DEEP: 3 TERM: GO:0006996 organelle organization and biogenesis *DEEP: 3 TERM: GO:0007010 cytoskeleton organization and biogenesis PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0007005 mitochondrion organization and biogenesis *DEEP: 0 TERM: GO:0008283 cell proliferation PROD: zip *DEEP: 1 TERM: GO:0006943 chemi-mechanical coupling *DEEP: 0 TERM: GO:0008152 metabolism *DEEP: 10 TERM: GO:0006519 amino acid and derivative metabolism *DEEP: 0 TERM: GO:0009058 biosynthesis *DEEP: 0 TERM: GO:0005975 carbohydrate metabolism PROD: Zw *DEEP: 1 TERM: GO:0009056 catabolism PROD: Zw *DEEP: 1 TERM: GO:0006731 coenzymes and prosthetic group metabolism PROD: Zw *DEEP: 1 TERM: GO:0006118 electron transport *DEEP: 0 TERM: GO:0006091 energy pathways PROD: Zw *DEEP: 1 TERM: GO:0006629 lipid metabolism *DEEP: 0 TERM: GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism PROD: Zw *DEEP: 6 TERM: GO:0006259 DNA metabolism *DEEP: 0 TERM: GO:0006350 transcription PROD: zfh2 PROD: Zfrp8 PROD: Zn72D PROD: Zpr1 PROD: Zyx102EF *DEEP: 5 TERM: GO:0019538 protein metabolism *DEEP: 0 TERM: GO:0006412 protein biosynthesis *DEEP: 0 TERM: GO:0006464 protein modification *DEEP: 0 TERM: GO:0019748 secondary metabolism *DEEP: 0 TERM: GO:0006950 response to stress *DEEP: 0 TERM: GO:0006810 transport *DEEP: 2 TERM: GO:0006811 ion transport PROD: ZIP1 PROD: Zip3 *DEEP: 2 TERM: GO:0015031 protein transport *DEEP: 0 TERM: GO:0016265 death *DEEP: 2 TERM: GO:0008219 cell death PROD: Zfrp8 PROD: zip *DEEP: 2 TERM: GO:0007275 development PROD: zip *DEEP: 23 TERM: GO:0030154 cell differentiation PROD: zip *DEEP: 1 TERM: GO:0009790 embryonic development PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip *DEEP: 5 TERM: GO:0040007 growth *DEEP: 0 TERM: GO:0009653 morphogenesis PROD: zfh2 PROD: zfh2 PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: Zwim *DEEP: 11 TERM: GO:0040029 regulation of gene expression, epigenetic *DEEP: 0 TERM: GO:0000003 reproduction PROD: zip PROD: ziti PROD: zpg PROD: zpg PROD: zuc *DEEP: 5 TERM: GO:0007582 physiological processes PROD: zip PROD: zip PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 5 TERM: GO:0016032 viral life cycle *DEEP: 0 TERM: GO:0005575 cellular_component *DEEP: 13 TERM: GO:0005623 cell PROD: zpg *DEEP: 11 TERM: GO:0005622 intracellular *DEEP: 10 TERM: GO:0005694 chromosome *DEEP: 0 TERM: GO:0005929 cilium *DEEP: 0 TERM: GO:0005737 cytoplasm PROD: zip *DEEP: 4 TERM: GO:0000229 cytoplasmic chromosome *DEEP: 0 TERM: GO:0016023 cytoplasmic vesicle *DEEP: 0 TERM: GO:0005856 cytoskeleton PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0005829 cytosol *DEEP: 0 TERM: GO:0005783 endoplasmic reticulum *DEEP: 0 TERM: GO:0005768 endosome *DEEP: 0 TERM: GO:0005794 Golgi apparatus *DEEP: 0 TERM: GO:0005811 lipid particle *DEEP: 0 TERM: GO:0005815 microtubule organizing center *DEEP: 0 TERM: GO:0005739 mitochondrion *DEEP: 0 TERM: GO:0005777 peroxisome *DEEP: 0 TERM: GO:0009536 plastid *DEEP: 0 TERM: GO:0005840 ribosome *DEEP: 0 TERM: GO:0005773 vacuole *DEEP: 0 TERM: GO:0005764 lysosome *DEEP: 0 TERM: GO:0005634 nucleus PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0000228 nuclear chromosome *DEEP: 0 TERM: GO:0005635 nuclear membrane *DEEP: 0 TERM: GO:0005730 nucleolus PROD: Zpr1 *DEEP: 1 TERM: GO:0005654 nucleoplasm *DEEP: 0 TERM: GO:0005886 plasma membrane PROD: zpg PROD: zpg *DEEP: 2 TERM: GO:0009579 thylakoid *DEEP: 0 TERM: GO:0008372 cellular_component unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0030312 external encapsulating structure *DEEP: 0 TERM: GO:0030313 cell envelope *DEEP: 0 TERM: GO:0005618 cell wall *DEEP: 0 TERM: GO:0005576 extracellular *DEEP: 0 TERM: GO:0005578 extracellular matrix *DEEP: 0 TERM: GO:0005615 extracellular space *DEEP: 0 TERM: GO:0005941 unlocalized *DEEP: 0 TERM: GO:0003674 molecular_function *DEEP: 21 TERM: GO:0016209 antioxidant activity *DEEP: 0 TERM: GO:0016329 apoptosis regulator activity *DEEP: 0 TERM: GO:0005488 binding *DEEP: 6 TERM: GO:0005509 calcium ion binding *DEEP: 0 TERM: GO:0030246 carbohydrate binding *DEEP: 0 TERM: GO:0008289 lipid binding *DEEP: 0 TERM: GO:0003676 nucleic acid binding *DEEP: 5 TERM: GO:0003677 DNA binding PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0003682 chromatin binding PROD: Zfrp8 *DEEP: 1 TERM: GO:0003700 transcription factor activity *DEEP: 0 TERM: GO:0004518 nuclease activity *DEEP: 0 TERM: GO:0003723 RNA binding PROD: Zn72D *DEEP: 1 TERM: GO:0008135 translation factor activity, nucleic acid binding *DEEP: 0 TERM: GO:0000166 nucleotide binding *DEEP: 0 TERM: GO:0019825 oxygen binding *DEEP: 0 TERM: GO:0005515 protein binding *DEEP: 1 TERM: GO:0008092 cytoskeletal protein binding PROD: zip *DEEP: 1 TERM: GO:0003779 actin binding *DEEP: 0 TERM: GO:0003824 catalytic activity PROD: Zw PROD: Zw *DEEP: 4 TERM: GO:0016787 hydrolase PROD: zip *DEEP: 1 TERM: GO:0008233 peptidase activity *DEEP: 0 TERM: GO:0004721 protein phosphatase activity *DEEP: 0 TERM: GO:0016301 kinase *DEEP: 1 TERM: GO:0004672 protein kinase activity PROD: Zwim *DEEP: 1 TERM: GO:0016740 transferase *DEEP: 0 TERM: GO:0005194 cell adhesion molecule activity *DEEP: 0 TERM: GO:0003754 chaperone activity *DEEP: 0 TERM: GO:0030188 chaperone regulator activity *DEEP: 0 TERM: GO:0003793 defense/immunity protein activity *DEEP: 0 TERM: GO:0030234 enzyme regulator activity *DEEP: 0 TERM: GO:0005554 molecular_function unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0003774 motor activity PROD: zip *DEEP: 1 TERM: GO:0045735 nutrient reservoir activity *DEEP: 0 TERM: GO:0017028 protein stabilization activity *DEEP: 0 TERM: GO:0008638 protein tagging activity *DEEP: 0 TERM: GO:0004871 signal transducer activity *DEEP: 0 TERM: GO:0004872 receptor activity *DEEP: 0 TERM: GO:0005102 receptor binding *DEEP: 0 TERM: GO:0005198 structural molecule activity PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 3 TERM: GO:0030528 transcription regulator activity PROD: zfh2 PROD: Zyx102EF *DEEP: 2 TERM: GO:0045182 translation regulator *DEEP: 0 TERM: GO:0005215 transporter activity PROD: ZIP1 PROD: Zip3 PROD: zpg *DEEP: 3 TERM: GO:0005489 electron transporter activity *DEEP: 0 TERM: GO:0005216 ion channel activity *DEEP: 0 TERM: GO:0005326 neurotransmitter transporter activity *DEEP: 0 TERM: GO:0030533 triplet codon-amino acid adaptor activity *DEEP: 0 TERM: part_of part_of *DEEP: 0 ok 3 annots: 86 ok 4 Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene ok 5 ok t/t080gofmt2.t ........... 1..3 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:10 2025 # Current time GMT: Wed Dec 24 07:35:10 2025 # Using Test.pm version 1.31 ok 1 ok 2 '(term (id "GO:0003673") (name "Gene_Ontology") (is_root "1") (namespace "Gene_Ontology")) '(term (id "GO:0003674") (name "molecular_function") (namespace "molecular_function") (relationship (type "part_of") (to "GO:0003673"))) '(term (id "X:1") (name "zoo") (namespace "molecular_function") (is_a "GO:0003674")) '(term (id "X:2") (name "goo") (namespace "molecular_function") (relationship (type "inverse_of") (to "X:1"))) '(term (id "X;3") (name "poo") (namespace "molecular_function") (relationship (type "disjoint_from") (to "X:2"))) '(term (id "X:5") (name "ooh") (namespace "molecular_function") (relationship (type "star") (to "X;3"))) '(term (id "X:6") (name "moo") (namespace "molecular_function") (relationship (type "hash") (to "X:5"))) ok 3 ok t/t100roundtrip.t ........ 1..2 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:11 2025 # Current time GMT: Wed Dec 24 07:35:11 2025 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml ./t/data/test-function.dat from:go_ont to:rdf ./t/data/test-function.dat from:go_ont to:pathlist ./t/data/test-function.dat from:go_ont to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat from:go_ont to:obo_text ./t/data/test-function.dat.obo_text from:obo_text to:prolog ./t/data/test-function.dat.obo_text from:obo_text to:rdf ./t/data/test-function.dat.obo_text from:obo_text to:pathlist ./t/data/test-function.dat.obo_text from:obo_text to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat.obo_text from:obo_text to:obo_xml ./t/data/test-function.dat.obo_text.obo_xml from:obo_xml to:go_ont ok 1 ./t/data/GO.defs from:go_def to:obo_xml ./t/data/GO.defs.obo_xml from:obo_xml to:go_def ok 2 ok t/t110basic.t ............ 1..4 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:11 2025 # Current time GMT: Wed Dec 24 07:35:11 2025 # Using Test.pm version 1.31 GO:0016604 GO:0016604 ok 1 PARENTS nucleoplasm ok 2 Gene_Ontology cell cellular_component intracellular nucleoplasm nucleus ok 3 GO:0005654 RENT complex chromatin remodeling complex chromatin silencing complex nuclear body nuclear speck ok 4 GO:0005654 ok t/t130relations.t ........ 1..7 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 OBO_REL:part_of ok 7 ok t/t140subgraph.t ......... 1..1 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 %nucleic acid binding ; GO:0003676 %DNA binding ; GO:0003677 %transcription factor ; GO:0003700 ; synonym:GO:0000130 ok 1 ok t/t150xref.t ............. 1..2 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t160logicaldef.t ....... 1..5 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ns: biological_process ok 2 ldef ns: foo ok 3 GO:0007626 OBOL:during FBdv:00005336 GO:0007626 ok 4 ok 5 ok t/t170chadoxml.t ......... 1..9 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 ok 2 ok 3 Phenylobacterium immobile {test} ok 4 ok t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t210cache.t ............ 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t220xref_esc.t ......... 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 UM-BBD_pathwayID:2,4,5-t UM-BBD_pathwayID:2,4,5-t ok 4 ok 5 ok 6 ok t/t230term_expression.t .. 1..1 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 GO:1234 part_of CL:abc GO:1234 part_of CL:abc part_of AO:999 GO:1234 part_of CL:abc part_of AO:999 has_coordinate x:left GO:1234 results_in_output_of CHEBI:765 ^part_of CL:abc part_of AO:999 has_coordinate x:left ok 1 ok t/t240ga2obj.t ........... 1..3 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 OBO_REL part_of part_of relationship internal is_transitive cvterm_property_type is_transitive 1 1 OBO_REL part_of ok 1 relationship ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:14 2025 # Current time GMT: Wed Dec 24 07:35:14 2025 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ (rdf:about "http://purl.org/obo/owl/OBO_REL#part_of")) (oboInOwl:hasOBONamespace "relationship") (oboInOwl:hasDbXref (oboInOwl:DbXref (rdfs:label "OBO_REL:part_of") (oboInOwl:hasURI (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#anyURI")) (. "http://purl.org/obo/owl/OBO_REL#OBO_REL_part_of" ))))) ok 1 http://purl.org/obo/owl/OBO_REL#part_of ok 2 '(owl:ObjectProperty (@ (rdf:about "http://purl.org/obo/owl/obo#foo")) (rdfs:label (@ (xml:lang "en")) (. "foo")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 3 '(owl:AnnotationProperty (@ (rdf:about "http://purl.org/obo/owl/obo#bar")) (rdfs:label (@ (xml:lang "en")) (. "bar")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 4 ok t/t290disjoint.t ......... 1..2 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:14 2025 # Current time GMT: Wed Dec 24 07:35:14 2025 # Using Test.pm version 1.31 ok 1 GO:0009987 GO:0051704 ok 2 ok All tests successful. Files=24, Tests=140, 6 wallclock secs ( 0.13 usr 0.04 sys + 2.80 cusr 0.32 csys = 3.29 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libgo-perl/ make -j42 install DESTDIR=/build/reproducible-path/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' dh_install prename 's/\.pl//' /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/* prename 's/\.pl//' /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/*.pl* make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgo-perl' in '../libgo-perl_0.15-10_all.deb'. dpkg-genbuildinfo --build=binary -O../libgo-perl_0.15-10_amd64.buildinfo dpkg-genchanges --build=binary -O../libgo-perl_0.15-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2162471 and its subdirectories I: Current time: Tue Dec 23 19:35:23 -12 2025 I: pbuilder-time-stamp: 1766561723 Wed Dec 24 07:35:23 UTC 2025 I: Signing ./b1/libgo-perl_0.15-10_amd64.buildinfo as libgo-perl_0.15-10_amd64.buildinfo.asc Wed Dec 24 07:35:23 UTC 2025 I: Signed ./b1/libgo-perl_0.15-10_amd64.buildinfo as ./b1/libgo-perl_0.15-10_amd64.buildinfo.asc Wed Dec 24 07:35:23 UTC 2025 - build #1 for libgo-perl/trixie/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Wed Dec 24 07:35:23 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-9lz8knza, removing. /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 01:12 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 01:05 b2 -rw-r--r-- 1 jenkins jenkins 2285 Dec 18 2023 libgo-perl_0.15-10.dsc -rw------- 1 jenkins jenkins 3405 Nov 21 01:05 rbuildlog.fyhzNhR /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b1: total 396 -rw-r--r-- 1 jenkins jenkins 108419 Nov 21 01:12 build.log -rw-r--r-- 1 jenkins jenkins 8476 Nov 21 01:12 libgo-perl_0.15-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2285 Nov 21 01:12 libgo-perl_0.15-10.dsc -rw-r--r-- 1 jenkins jenkins 251004 Nov 21 01:12 libgo-perl_0.15-10_all.deb -rw-r--r-- 1 jenkins jenkins 6140 Nov 21 01:12 libgo-perl_0.15-10_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7022 Nov 21 01:12 libgo-perl_0.15-10_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1163 Nov 21 01:12 libgo-perl_0.15-10_amd64.changes -rw-r--r-- 1 jenkins jenkins 1327 Nov 21 01:12 libgo-perl_0.15-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b2: total 0 Thu Nov 21 01:12:24 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 23 19:28:57 -12 2025 I: pbuilder-time-stamp: 1766561337 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgo-perl_0.15-10.dsc] I: copying [./libgo-perl_0.15.orig.tar.gz] I: copying [./libgo-perl_0.15-10.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 18 11:12:17 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libgo-perl_0.15-10.dsc: no acceptable signature found dpkg-source: info: extracting libgo-perl in libgo-perl-0.15 dpkg-source: info: unpacking libgo-perl_0.15.orig.tar.gz dpkg-source: info: unpacking libgo-perl_0.15-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-whatis-entries.patch dpkg-source: info: applying fix-missing-manpages dpkg-source: info: applying fix-pod.patch dpkg-source: info: applying fix_test_xsltproc dpkg-source: info: applying fix_hash_in_go_io_dotty.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying spelling2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2162471/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='069d32cafe34441db2c5373527c94cc1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2162471' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/pbuilderrc_MGGg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b1 --logfile b1/build.log libgo-perl_0.15-10.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2162471/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdata-stag-perl; however: Package libdata-stag-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-libxslt-perl; however: Package libxml-libxslt-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-writer-perl; however: Package libxml-writer-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-checker-perl; however: Package libxml-checker-perl is not installed. pbuilder-satisfydepends-dummy depends on xsltproc; however: Package xsltproc is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-checker-perl{a} libxml-dom-perl{a} libxml-libxml-perl{a} libxml-libxslt-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml-regexp-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-writer-perl{a} libxml2{a} libxslt1.1{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} rename{a} sensible-utils{a} ucf{a} xsltproc{a} The following packages are RECOMMENDED but will NOT be installed: curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl lynx perl-tk wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 96.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 26 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 53 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libxml-checker-perl all 0.13-7 [40.6 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b1 [314 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libxml-libxslt-perl amd64 2.003000-2+b1 [47.9 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 rename all 2.02-1 [21.8 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 xsltproc amd64 1.1.35-1.1+b1 [115 kB] Fetched 27.4 MB in 26s (1065 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. 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Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../68-libxslt1.1_1.1.35-1.1+b1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1.1+b1) ... Selecting previously unselected package libxml-libxslt-perl:amd64. Preparing to unpack .../69-libxml-libxslt-perl_2.003000-2+b1_amd64.deb ... Unpacking libxml-libxslt-perl:amd64 (2.003000-2+b1) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../70-libxml-writer-perl_0.900-2_all.deb ... Unpacking libxml-writer-perl (0.900-2) ... Selecting previously unselected package rename. Preparing to unpack .../71-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Selecting previously unselected package xsltproc. Preparing to unpack .../72-xsltproc_1.1.35-1.1+b1_amd64.deb ... Unpacking xsltproc (1.1.35-1.1+b1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.3.2-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up libnet-http-perl (6.23-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up xsltproc (1.1.35-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.20) ... Setting up libxml-libxslt-perl:amd64 (2.003000-2+b1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-perl (0.08-4) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libxml-checker-perl (0.13-7) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgo-perl_0.15-10_source.changes dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libgo-perl-0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libgo-perl-0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm cp GO/Basic.pm blib/lib/GO/Basic.pm cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm cp GO/Parser.pm blib/lib/GO/Parser.pm cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl cp GO/Utils.pm blib/lib/GO/Utils.pm cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl cp go-perl.pod blib/lib/go-perl.pod cp scripts/go-apply-xslt blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl cp scripts/go2chadoxml blib/script/go2chadoxml cp scripts/go2error_report blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore cp scripts/go2obo blib/script/go2obo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo cp scripts/go2obo_html blib/script/go2obo_html cp scripts/go2obo_text blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text cp scripts/go2obo_xml blib/script/go2obo_xml cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl cp scripts/go2pathlist blib/script/go2pathlist cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog cp scripts/go2rdf blib/script/go2rdf cp scripts/go2rdfxml blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf cp scripts/go2summary blib/script/go2summary cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2summary "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr cp scripts/go2tbl blib/script/go2tbl cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl cp scripts/go2xml blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' dh_auto_test make -j42 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:08 2025 # Current time GMT: Wed Dec 24 07:35:08 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t020paths.t ............ 1..7 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:09 2025 # Current time GMT: Wed Dec 24 07:35:09 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/t030detecterror.t ...... 1..4 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:09 2025 # Current time GMT: Wed Dec 24 07:35:09 2025 # Using Test.pm version 1.31 ok 1 ok 2 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 3 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 4 ok t/t050oboformat.t ........ 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:09 2025 # Current time GMT: Wed Dec 24 07:35:09 2025 # Using Test.pm version 1.31 ok 1 ok 2 ROOT: cellular_component ROOT: biological_process ROOT: molecular_function ok 3 ok 4 EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005935|GO:0000134|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003678|GO:0004386|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003708|GO:0004879|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0000133|GO:0005938|part_of EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0000144|GO:0030481|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0003904|GO:0003913|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003908|GO:0008172|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0005934|GO:0000134|is_a EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003707|GO:0004879|is_a EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0000142|GO:0030480|is_a EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003721|GO:0003964|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a total parent rels:118 total (both ways):218 ok 5 ok 6 ok t/t060oboformat2.t ....... 1..36 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:09 2025 # Current time GMT: Wed Dec 24 07:35:09 2025 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 ROOT: root ROOT: Part of ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 DEFXREFS:GO:jic EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:curators EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a SYNS:class I PI3K|FAKE:0001|fake synonym EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:curators EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042595|GO:0042594|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:GO:ai EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008344|GO:0007626|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ./t/data/go-truncated.obo from:obo_text to:obo_xml ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 ROOT: root ROOT: Part of ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a SYNS:fake synonym|FAKE:0001|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ./t/data/go-truncated.obo.obo_xml from:obo_xml to:obo_text ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: root ROOT: Part of TERMS: 29 DEFXREFS:GO:curators EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a SYNS:fake synonym|class I PI3K|FAKE:0001 EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:10 2025 # Current time GMT: Wed Dec 24 07:35:10 2025 # Using Test.pm version 1.31 ok 1 ok 2 TERM: GO:0003673 Gene_Ontology *DEEP: 86 TERM: GO:0008150 biological_process *DEEP: 52 TERM: GO:0007610 behavior *DEEP: 0 TERM: GO:0000004 biological_process unknown PROD: ziplock *DEEP: 1 TERM: GO:0007154 cell communication *DEEP: 3 TERM: GO:0008037 cell recognition *DEEP: 0 TERM: GO:0007267 cell-cell signaling *DEEP: 0 TERM: GO:0030383 host-pathogen interaction *DEEP: 0 TERM: GO:0009719 response to endogenous stimulus PROD: zip *DEEP: 1 TERM: GO:0009605 response to external stimulus *DEEP: 0 TERM: GO:0009628 response to abiotic stimulus *DEEP: 0 TERM: GO:0009607 response to biotic stimulus *DEEP: 0 TERM: GO:0007165 signal transduction PROD: zpg PROD: Zyx102EF *DEEP: 2 TERM: GO:0008151 cell growth and/or maintenance *DEEP: 18 TERM: GO:0007049 cell cycle PROD: zip PROD: zwilch *DEEP: 2 TERM: GO:0016049 cell growth *DEEP: 0 TERM: GO:0019725 cell homeostasis *DEEP: 0 TERM: GO:0016043 cell organization and biogenesis *DEEP: 3 TERM: GO:0007028 cytoplasm organization and biogenesis *DEEP: 3 TERM: GO:0006996 organelle organization and biogenesis *DEEP: 3 TERM: GO:0007010 cytoskeleton organization and biogenesis PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0007005 mitochondrion organization and biogenesis *DEEP: 0 TERM: GO:0008283 cell proliferation PROD: zip *DEEP: 1 TERM: GO:0006943 chemi-mechanical coupling *DEEP: 0 TERM: GO:0008152 metabolism *DEEP: 10 TERM: GO:0006519 amino acid and derivative metabolism *DEEP: 0 TERM: GO:0009058 biosynthesis *DEEP: 0 TERM: GO:0005975 carbohydrate metabolism PROD: Zw *DEEP: 1 TERM: GO:0009056 catabolism PROD: Zw *DEEP: 1 TERM: GO:0006731 coenzymes and prosthetic group metabolism PROD: Zw *DEEP: 1 TERM: GO:0006118 electron transport *DEEP: 0 TERM: GO:0006091 energy pathways PROD: Zw *DEEP: 1 TERM: GO:0006629 lipid metabolism *DEEP: 0 TERM: GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism PROD: Zw *DEEP: 6 TERM: GO:0006259 DNA metabolism *DEEP: 0 TERM: GO:0006350 transcription PROD: zfh2 PROD: Zfrp8 PROD: Zn72D PROD: Zpr1 PROD: Zyx102EF *DEEP: 5 TERM: GO:0019538 protein metabolism *DEEP: 0 TERM: GO:0006412 protein biosynthesis *DEEP: 0 TERM: GO:0006464 protein modification *DEEP: 0 TERM: GO:0019748 secondary metabolism *DEEP: 0 TERM: GO:0006950 response to stress *DEEP: 0 TERM: GO:0006810 transport *DEEP: 2 TERM: GO:0006811 ion transport PROD: ZIP1 PROD: Zip3 *DEEP: 2 TERM: GO:0015031 protein transport *DEEP: 0 TERM: GO:0016265 death *DEEP: 2 TERM: GO:0008219 cell death PROD: Zfrp8 PROD: zip *DEEP: 2 TERM: GO:0007275 development PROD: zip *DEEP: 23 TERM: GO:0030154 cell differentiation PROD: zip *DEEP: 1 TERM: GO:0009790 embryonic development PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip *DEEP: 5 TERM: GO:0040007 growth *DEEP: 0 TERM: GO:0009653 morphogenesis PROD: zfh2 PROD: zfh2 PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: Zwim *DEEP: 11 TERM: GO:0040029 regulation of gene expression, epigenetic *DEEP: 0 TERM: GO:0000003 reproduction PROD: zip PROD: ziti PROD: zpg PROD: zpg PROD: zuc *DEEP: 5 TERM: GO:0007582 physiological processes PROD: zip PROD: zip PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 5 TERM: GO:0016032 viral life cycle *DEEP: 0 TERM: GO:0005575 cellular_component *DEEP: 13 TERM: GO:0005623 cell PROD: zpg *DEEP: 11 TERM: GO:0005622 intracellular *DEEP: 10 TERM: GO:0005694 chromosome *DEEP: 0 TERM: GO:0005929 cilium *DEEP: 0 TERM: GO:0005737 cytoplasm PROD: zip *DEEP: 4 TERM: GO:0000229 cytoplasmic chromosome *DEEP: 0 TERM: GO:0016023 cytoplasmic vesicle *DEEP: 0 TERM: GO:0005856 cytoskeleton PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0005829 cytosol *DEEP: 0 TERM: GO:0005783 endoplasmic reticulum *DEEP: 0 TERM: GO:0005768 endosome *DEEP: 0 TERM: GO:0005794 Golgi apparatus *DEEP: 0 TERM: GO:0005811 lipid particle *DEEP: 0 TERM: GO:0005815 microtubule organizing center *DEEP: 0 TERM: GO:0005739 mitochondrion *DEEP: 0 TERM: GO:0005777 peroxisome *DEEP: 0 TERM: GO:0009536 plastid *DEEP: 0 TERM: GO:0005840 ribosome *DEEP: 0 TERM: GO:0005773 vacuole *DEEP: 0 TERM: GO:0005764 lysosome *DEEP: 0 TERM: GO:0005634 nucleus PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0000228 nuclear chromosome *DEEP: 0 TERM: GO:0005635 nuclear membrane *DEEP: 0 TERM: GO:0005730 nucleolus PROD: Zpr1 *DEEP: 1 TERM: GO:0005654 nucleoplasm *DEEP: 0 TERM: GO:0005886 plasma membrane PROD: zpg PROD: zpg *DEEP: 2 TERM: GO:0009579 thylakoid *DEEP: 0 TERM: GO:0008372 cellular_component unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0030312 external encapsulating structure *DEEP: 0 TERM: GO:0030313 cell envelope *DEEP: 0 TERM: GO:0005618 cell wall *DEEP: 0 TERM: GO:0005576 extracellular *DEEP: 0 TERM: GO:0005578 extracellular matrix *DEEP: 0 TERM: GO:0005615 extracellular space *DEEP: 0 TERM: GO:0005941 unlocalized *DEEP: 0 TERM: GO:0003674 molecular_function *DEEP: 21 TERM: GO:0016209 antioxidant activity *DEEP: 0 TERM: GO:0016329 apoptosis regulator activity *DEEP: 0 TERM: GO:0005488 binding *DEEP: 6 TERM: GO:0005509 calcium ion binding *DEEP: 0 TERM: GO:0030246 carbohydrate binding *DEEP: 0 TERM: GO:0008289 lipid binding *DEEP: 0 TERM: GO:0003676 nucleic acid binding *DEEP: 5 TERM: GO:0003677 DNA binding PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0003682 chromatin binding PROD: Zfrp8 *DEEP: 1 TERM: GO:0003700 transcription factor activity *DEEP: 0 TERM: GO:0004518 nuclease activity *DEEP: 0 TERM: GO:0003723 RNA binding PROD: Zn72D *DEEP: 1 TERM: GO:0008135 translation factor activity, nucleic acid binding *DEEP: 0 TERM: GO:0000166 nucleotide binding *DEEP: 0 TERM: GO:0019825 oxygen binding *DEEP: 0 TERM: GO:0005515 protein binding *DEEP: 1 TERM: GO:0008092 cytoskeletal protein binding PROD: zip *DEEP: 1 TERM: GO:0003779 actin binding *DEEP: 0 TERM: GO:0003824 catalytic activity PROD: Zw PROD: Zw *DEEP: 4 TERM: GO:0016787 hydrolase PROD: zip *DEEP: 1 TERM: GO:0008233 peptidase activity *DEEP: 0 TERM: GO:0004721 protein phosphatase activity *DEEP: 0 TERM: GO:0016301 kinase *DEEP: 1 TERM: GO:0004672 protein kinase activity PROD: Zwim *DEEP: 1 TERM: GO:0016740 transferase *DEEP: 0 TERM: GO:0005194 cell adhesion molecule activity *DEEP: 0 TERM: GO:0003754 chaperone activity *DEEP: 0 TERM: GO:0030188 chaperone regulator activity *DEEP: 0 TERM: GO:0003793 defense/immunity protein activity *DEEP: 0 TERM: GO:0030234 enzyme regulator activity *DEEP: 0 TERM: GO:0005554 molecular_function unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0003774 motor activity PROD: zip *DEEP: 1 TERM: GO:0045735 nutrient reservoir activity *DEEP: 0 TERM: GO:0017028 protein stabilization activity *DEEP: 0 TERM: GO:0008638 protein tagging activity *DEEP: 0 TERM: GO:0004871 signal transducer activity *DEEP: 0 TERM: GO:0004872 receptor activity *DEEP: 0 TERM: GO:0005102 receptor binding *DEEP: 0 TERM: GO:0005198 structural molecule activity PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 3 TERM: GO:0030528 transcription regulator activity PROD: zfh2 PROD: Zyx102EF *DEEP: 2 TERM: GO:0045182 translation regulator *DEEP: 0 TERM: GO:0005215 transporter activity PROD: ZIP1 PROD: Zip3 PROD: zpg *DEEP: 3 TERM: GO:0005489 electron transporter activity *DEEP: 0 TERM: GO:0005216 ion channel activity *DEEP: 0 TERM: GO:0005326 neurotransmitter transporter activity *DEEP: 0 TERM: GO:0030533 triplet codon-amino acid adaptor activity *DEEP: 0 TERM: part_of part_of *DEEP: 0 ok 3 annots: 86 ok 4 Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene ok 5 ok t/t080gofmt2.t ........... 1..3 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:10 2025 # Current time GMT: Wed Dec 24 07:35:10 2025 # Using Test.pm version 1.31 ok 1 ok 2 '(term (id "GO:0003673") (name "Gene_Ontology") (is_root "1") (namespace "Gene_Ontology")) '(term (id "GO:0003674") (name "molecular_function") (namespace "molecular_function") (relationship (type "part_of") (to "GO:0003673"))) '(term (id "X:1") (name "zoo") (namespace "molecular_function") (is_a "GO:0003674")) '(term (id "X:2") (name "goo") (namespace "molecular_function") (relationship (type "inverse_of") (to "X:1"))) '(term (id "X;3") (name "poo") (namespace "molecular_function") (relationship (type "disjoint_from") (to "X:2"))) '(term (id "X:5") (name "ooh") (namespace "molecular_function") (relationship (type "star") (to "X;3"))) '(term (id "X:6") (name "moo") (namespace "molecular_function") (relationship (type "hash") (to "X:5"))) ok 3 ok t/t100roundtrip.t ........ 1..2 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:11 2025 # Current time GMT: Wed Dec 24 07:35:11 2025 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml ./t/data/test-function.dat from:go_ont to:rdf ./t/data/test-function.dat from:go_ont to:pathlist ./t/data/test-function.dat from:go_ont to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat from:go_ont to:obo_text ./t/data/test-function.dat.obo_text from:obo_text to:prolog ./t/data/test-function.dat.obo_text from:obo_text to:rdf ./t/data/test-function.dat.obo_text from:obo_text to:pathlist ./t/data/test-function.dat.obo_text from:obo_text to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat.obo_text from:obo_text to:obo_xml ./t/data/test-function.dat.obo_text.obo_xml from:obo_xml to:go_ont ok 1 ./t/data/GO.defs from:go_def to:obo_xml ./t/data/GO.defs.obo_xml from:obo_xml to:go_def ok 2 ok t/t110basic.t ............ 1..4 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:11 2025 # Current time GMT: Wed Dec 24 07:35:11 2025 # Using Test.pm version 1.31 GO:0016604 GO:0016604 ok 1 PARENTS nucleoplasm ok 2 Gene_Ontology cell cellular_component intracellular nucleoplasm nucleus ok 3 GO:0005654 RENT complex chromatin remodeling complex chromatin silencing complex nuclear body nuclear speck ok 4 GO:0005654 ok t/t130relations.t ........ 1..7 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 OBO_REL:part_of ok 7 ok t/t140subgraph.t ......... 1..1 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 %nucleic acid binding ; GO:0003676 %DNA binding ; GO:0003677 %transcription factor ; GO:0003700 ; synonym:GO:0000130 ok 1 ok t/t150xref.t ............. 1..2 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t160logicaldef.t ....... 1..5 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ns: biological_process ok 2 ldef ns: foo ok 3 GO:0007626 OBOL:during FBdv:00005336 GO:0007626 ok 4 ok 5 ok t/t170chadoxml.t ......... 1..9 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:12 2025 # Current time GMT: Wed Dec 24 07:35:12 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 ok 2 ok 3 Phenylobacterium immobile {test} ok 4 ok t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t210cache.t ............ 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t220xref_esc.t ......... 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 UM-BBD_pathwayID:2,4,5-t UM-BBD_pathwayID:2,4,5-t ok 4 ok 5 ok 6 ok t/t230term_expression.t .. 1..1 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 GO:1234 part_of CL:abc GO:1234 part_of CL:abc part_of AO:999 GO:1234 part_of CL:abc part_of AO:999 has_coordinate x:left GO:1234 results_in_output_of CHEBI:765 ^part_of CL:abc part_of AO:999 has_coordinate x:left ok 1 ok t/t240ga2obj.t ........... 1..3 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:13 2025 # Current time GMT: Wed Dec 24 07:35:13 2025 # Using Test.pm version 1.31 OBO_REL part_of part_of relationship internal is_transitive cvterm_property_type is_transitive 1 1 OBO_REL part_of ok 1 relationship ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:14 2025 # Current time GMT: Wed Dec 24 07:35:14 2025 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ (rdf:about "http://purl.org/obo/owl/OBO_REL#part_of")) (oboInOwl:hasOBONamespace "relationship") (oboInOwl:hasDbXref (oboInOwl:DbXref (rdfs:label "OBO_REL:part_of") (oboInOwl:hasURI (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#anyURI")) (. "http://purl.org/obo/owl/OBO_REL#OBO_REL_part_of" ))))) ok 1 http://purl.org/obo/owl/OBO_REL#part_of ok 2 '(owl:ObjectProperty (@ (rdf:about "http://purl.org/obo/owl/obo#foo")) (rdfs:label (@ (xml:lang "en")) (. "foo")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 3 '(owl:AnnotationProperty (@ (rdf:about "http://purl.org/obo/owl/obo#bar")) (rdfs:label (@ (xml:lang "en")) (. "bar")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 4 ok t/t290disjoint.t ......... 1..2 # Running under perl version 5.040000 for linux # Current time local: Wed Dec 24 07:35:14 2025 # Current time GMT: Wed Dec 24 07:35:14 2025 # Using Test.pm version 1.31 ok 1 GO:0009987 GO:0051704 ok 2 ok All tests successful. Files=24, Tests=140, 6 wallclock secs ( 0.13 usr 0.04 sys + 2.80 cusr 0.32 csys = 3.29 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libgo-perl/ make -j42 install DESTDIR=/build/reproducible-path/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' dh_install prename 's/\.pl//' /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/* prename 's/\.pl//' /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/*.pl* make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgo-perl' in '../libgo-perl_0.15-10_all.deb'. dpkg-genbuildinfo --build=binary -O../libgo-perl_0.15-10_amd64.buildinfo dpkg-genchanges --build=binary -O../libgo-perl_0.15-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2162471 and its subdirectories I: Current time: Tue Dec 23 19:35:23 -12 2025 I: pbuilder-time-stamp: 1766561723 Thu Nov 21 01:12:25 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Nov 21 01:12:25 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Nov 21 01:12:25 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Nov 21 01:12:25 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-pifyKA' ==================================================================================== Thu Nov 21 01:12:26 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 libgo-perl trixie /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah 0.15-10" as arguments. Thu Nov 21 01:12:26 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-fwbLXTMe" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 01:12:26 UTC 2024 I: Downloading source for trixie/libgo-perl=0.15-10 Reading package lists... NOTICE: 'libgo-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgo-perl.git Please use: git clone https://salsa.debian.org/med-team/libgo-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 820 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (dsc) [2285 B] Get:2 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (tar) [809 kB] Get:3 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (diff) [8476 B] Fetched 820 kB in 0s (10.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libgo-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgo-perl.git Please use: git clone https://salsa.debian.org/med-team/libgo-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 820 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (dsc) [2285 B] Get:2 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (tar) [809 kB] Get:3 http://deb.debian.org/debian trixie/main libgo-perl 0.15-10 (diff) [8476 B] Fetched 820 kB in 0s (10.1 MB/s) Download complete and in download only mode ============================================================================= Re-Building libgo-perl in trixie on amd64 on ionos11-amd64 now. Date: Thu Nov 21 01:12:26 UTC 2024 Date UTC: Thu Nov 21 01:12:26 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/pbuilderrc_HpTa + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libgo-perl = debian-installer -o libgo-perl = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libgo-perl = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/pbuilderrc_HpTa --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b2 --logfile b2/build.log libgo-perl_0.15-10.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 15:12:26 +14 2024 I: pbuilder-time-stamp: 1732151546 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgo-perl_0.15-10.dsc] I: copying [./libgo-perl_0.15.orig.tar.gz] I: copying [./libgo-perl_0.15-10.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 18 11:12:17 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libgo-perl_0.15-10.dsc: no acceptable signature found dpkg-source: info: extracting libgo-perl in libgo-perl-0.15 dpkg-source: info: unpacking libgo-perl_0.15.orig.tar.gz dpkg-source: info: unpacking libgo-perl_0.15-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-whatis-entries.patch dpkg-source: info: applying fix-missing-manpages dpkg-source: info: applying fix-pod.patch dpkg-source: info: applying fix_test_xsltproc dpkg-source: info: applying fix_hash_in_go_io_dotty.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying spelling2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/869384/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 21 01:12 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/869384/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/869384/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=0ce1f8fc18da4ad29920d4cbf0cdf3a4 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=869384 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/pbuilderrc_HpTa --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b2 --logfile b2/build.log libgo-perl_0.15-10.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/869384/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdata-stag-perl; however: Package libdata-stag-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-libxslt-perl; however: Package libxml-libxslt-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-writer-perl; however: Package libxml-writer-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-checker-perl; however: Package libxml-checker-perl is not installed. pbuilder-satisfydepends-dummy depends on xsltproc; however: Package xsltproc is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-checker-perl{a} libxml-dom-perl{a} libxml-libxml-perl{a} libxml-libxslt-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml-regexp-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-writer-perl{a} libxml2{a} libxslt1.1{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} rename{a} sensible-utils{a} ucf{a} xsltproc{a} The following packages are RECOMMENDED but will NOT be installed: curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl lynx perl-tk wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 96.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 26 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 53 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libxml-checker-perl all 0.13-7 [40.6 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b1 [314 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libxml-libxslt-perl amd64 2.003000-2+b1 [47.9 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 rename all 2.02-1 [21.8 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 xsltproc amd64 1.1.35-1.1+b1 [115 kB] Fetched 27.4 MB in 0s (56.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... 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Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../68-libxslt1.1_1.1.35-1.1+b1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1.1+b1) ... Selecting previously unselected package libxml-libxslt-perl:amd64. Preparing to unpack .../69-libxml-libxslt-perl_2.003000-2+b1_amd64.deb ... Unpacking libxml-libxslt-perl:amd64 (2.003000-2+b1) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../70-libxml-writer-perl_0.900-2_all.deb ... Unpacking libxml-writer-perl (0.900-2) ... Selecting previously unselected package rename. Preparing to unpack .../71-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Selecting previously unselected package xsltproc. Preparing to unpack .../72-xsltproc_1.1.35-1.1+b1_amd64.deb ... Unpacking xsltproc (1.1.35-1.1+b1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.3.2-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up libnet-http-perl (6.23-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up xsltproc (1.1.35-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.20) ... Setting up libxml-libxslt-perl:amd64 (2.003000-2+b1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-perl (0.08-4) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libxml-checker-perl (0.13-7) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/869384/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/869384/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libgo-perl_0.15-10_source.changes dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libgo-perl-0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libgo-perl-0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build make -j20 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/Basic.pm blib/lib/GO/Basic.pm cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm cp GO/Parser.pm blib/lib/GO/Parser.pm cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/Utils.pm blib/lib/GO/Utils.pm cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl cp go-perl.pod blib/lib/go-perl.pod cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm cp scripts/go-apply-xslt blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl cp scripts/go2chadoxml blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl cp scripts/go2error_report blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore cp scripts/go2obo blib/script/go2obo cp scripts/go2obo_html blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html cp scripts/go2obo_text blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text cp scripts/go2obo_xml blib/script/go2obo_xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl cp scripts/go2pathlist blib/script/go2pathlist "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog cp scripts/go2rdf blib/script/go2rdf "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf cp scripts/go2rdfxml blib/script/go2rdfxml cp scripts/go2summary blib/script/go2summary "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2summary cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr cp scripts/go2tbl blib/script/go2tbl cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html cp scripts/go2xml blib/script/go2xml cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' dh_auto_test make -j20 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:06 2024 # Current time GMT: Thu Nov 21 01:13:06 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t020paths.t ............ 1..7 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:06 2024 # Current time GMT: Thu Nov 21 01:13:06 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/t030detecterror.t ...... 1..4 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:06 2024 # Current time GMT: Thu Nov 21 01:13:06 2024 # Using Test.pm version 1.31 ok 1 ok 2 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 3 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 4 ok t/t050oboformat.t ........ 1..6 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:07 2024 # Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ok 1 ok 2 ROOT: biological_process ROOT: molecular_function ROOT: cellular_component ok 3 ok 4 EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003678|GO:0004386|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0000144|GO:0030481|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0003721|GO:0003964|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0003908|GO:0008172|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0000142|GO:0030480|is_a EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0005934|GO:0000134|is_a EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005935|GO:0000134|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003708|GO:0004879|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0000133|GO:0005938|part_of EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0003904|GO:0003913|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003707|GO:0004879|is_a EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0004844|GO:0003686|is_a total parent rels:118 total (both ways):218 ok 5 ok 6 ok t/t060oboformat2.t ....... 1..36 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:07 2024 # Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 ROOT: Part of ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root TERMS: 29 DEFXREFS:GO:jic EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a SYNS:FAKE:0001|fake synonym|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008344|GO:0007626|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ./t/data/go-truncated.obo from:obo_text to:obo_xml ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: Part of ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root TERMS: 29 SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042595|GO:0042594|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a SYNS:class I PI3K|FAKE:0001|fake synonym EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:curators EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0008150|root|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a DEFXREFS:GO:ai EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ./t/data/go-truncated.obo.obo_xml from:obo_xml to:obo_text ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 ROOT: root ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: Part of TERMS: 29 DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:ai EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008344|GO:0007626|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a SYNS:FAKE:0001|fake synonym|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:curators EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042595|GO:0042594|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:07 2024 # Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ok 1 ok 2 TERM: GO:0003673 Gene_Ontology *DEEP: 86 TERM: GO:0008150 biological_process *DEEP: 52 TERM: GO:0007610 behavior *DEEP: 0 TERM: GO:0000004 biological_process unknown PROD: ziplock *DEEP: 1 TERM: GO:0007154 cell communication *DEEP: 3 TERM: GO:0008037 cell recognition *DEEP: 0 TERM: GO:0007267 cell-cell signaling *DEEP: 0 TERM: GO:0030383 host-pathogen interaction *DEEP: 0 TERM: GO:0009719 response to endogenous stimulus PROD: zip *DEEP: 1 TERM: GO:0009605 response to external stimulus *DEEP: 0 TERM: GO:0009628 response to abiotic stimulus *DEEP: 0 TERM: GO:0009607 response to biotic stimulus *DEEP: 0 TERM: GO:0007165 signal transduction PROD: zpg PROD: Zyx102EF *DEEP: 2 TERM: GO:0008151 cell growth and/or maintenance *DEEP: 18 TERM: GO:0007049 cell cycle PROD: zip PROD: zwilch *DEEP: 2 TERM: GO:0016049 cell growth *DEEP: 0 TERM: GO:0019725 cell homeostasis *DEEP: 0 TERM: GO:0016043 cell organization and biogenesis *DEEP: 3 TERM: GO:0007028 cytoplasm organization and biogenesis *DEEP: 3 TERM: GO:0006996 organelle organization and biogenesis *DEEP: 3 TERM: GO:0007010 cytoskeleton organization and biogenesis PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0007005 mitochondrion organization and biogenesis *DEEP: 0 TERM: GO:0008283 cell proliferation PROD: zip *DEEP: 1 TERM: GO:0006943 chemi-mechanical coupling *DEEP: 0 TERM: GO:0008152 metabolism *DEEP: 10 TERM: GO:0006519 amino acid and derivative metabolism *DEEP: 0 TERM: GO:0009058 biosynthesis *DEEP: 0 TERM: GO:0005975 carbohydrate metabolism PROD: Zw *DEEP: 1 TERM: GO:0009056 catabolism PROD: Zw *DEEP: 1 TERM: GO:0006731 coenzymes and prosthetic group metabolism PROD: Zw *DEEP: 1 TERM: GO:0006118 electron transport *DEEP: 0 TERM: GO:0006091 energy pathways PROD: Zw *DEEP: 1 TERM: GO:0006629 lipid metabolism *DEEP: 0 TERM: GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism PROD: Zw *DEEP: 6 TERM: GO:0006259 DNA metabolism *DEEP: 0 TERM: GO:0006350 transcription PROD: zfh2 PROD: Zfrp8 PROD: Zn72D PROD: Zpr1 PROD: Zyx102EF *DEEP: 5 TERM: GO:0019538 protein metabolism *DEEP: 0 TERM: GO:0006412 protein biosynthesis *DEEP: 0 TERM: GO:0006464 protein modification *DEEP: 0 TERM: GO:0019748 secondary metabolism *DEEP: 0 TERM: GO:0006950 response to stress *DEEP: 0 TERM: GO:0006810 transport *DEEP: 2 TERM: GO:0006811 ion transport PROD: ZIP1 PROD: Zip3 *DEEP: 2 TERM: GO:0015031 protein transport *DEEP: 0 TERM: GO:0016265 death *DEEP: 2 TERM: GO:0008219 cell death PROD: Zfrp8 PROD: zip *DEEP: 2 TERM: GO:0007275 development PROD: zip *DEEP: 23 TERM: GO:0030154 cell differentiation PROD: zip *DEEP: 1 TERM: GO:0009790 embryonic development PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip *DEEP: 5 TERM: GO:0040007 growth *DEEP: 0 TERM: GO:0009653 morphogenesis PROD: zfh2 PROD: zfh2 PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: Zwim *DEEP: 11 TERM: GO:0040029 regulation of gene expression, epigenetic *DEEP: 0 TERM: GO:0000003 reproduction PROD: zip PROD: ziti PROD: zpg PROD: zpg PROD: zuc *DEEP: 5 TERM: GO:0007582 physiological processes PROD: zip PROD: zip PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 5 TERM: GO:0016032 viral life cycle *DEEP: 0 TERM: GO:0005575 cellular_component *DEEP: 13 TERM: GO:0005623 cell PROD: zpg *DEEP: 11 TERM: GO:0005622 intracellular *DEEP: 10 TERM: GO:0005694 chromosome *DEEP: 0 TERM: GO:0005929 cilium *DEEP: 0 TERM: GO:0005737 cytoplasm PROD: zip *DEEP: 4 TERM: GO:0000229 cytoplasmic chromosome *DEEP: 0 TERM: GO:0016023 cytoplasmic vesicle *DEEP: 0 TERM: GO:0005856 cytoskeleton PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0005829 cytosol *DEEP: 0 TERM: GO:0005783 endoplasmic reticulum *DEEP: 0 TERM: GO:0005768 endosome *DEEP: 0 TERM: GO:0005794 Golgi apparatus *DEEP: 0 TERM: GO:0005811 lipid particle *DEEP: 0 TERM: GO:0005815 microtubule organizing center *DEEP: 0 TERM: GO:0005739 mitochondrion *DEEP: 0 TERM: GO:0005777 peroxisome *DEEP: 0 TERM: GO:0009536 plastid *DEEP: 0 TERM: GO:0005840 ribosome *DEEP: 0 TERM: GO:0005773 vacuole *DEEP: 0 TERM: GO:0005764 lysosome *DEEP: 0 TERM: GO:0005634 nucleus PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0000228 nuclear chromosome *DEEP: 0 TERM: GO:0005635 nuclear membrane *DEEP: 0 TERM: GO:0005730 nucleolus PROD: Zpr1 *DEEP: 1 TERM: GO:0005654 nucleoplasm *DEEP: 0 TERM: GO:0005886 plasma membrane PROD: zpg PROD: zpg *DEEP: 2 TERM: GO:0009579 thylakoid *DEEP: 0 TERM: GO:0008372 cellular_component unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0030312 external encapsulating structure *DEEP: 0 TERM: GO:0030313 cell envelope *DEEP: 0 TERM: GO:0005618 cell wall *DEEP: 0 TERM: GO:0005576 extracellular *DEEP: 0 TERM: GO:0005578 extracellular matrix *DEEP: 0 TERM: GO:0005615 extracellular space *DEEP: 0 TERM: GO:0005941 unlocalized *DEEP: 0 TERM: GO:0003674 molecular_function *DEEP: 21 TERM: GO:0016209 antioxidant activity *DEEP: 0 TERM: GO:0016329 apoptosis regulator activity *DEEP: 0 TERM: GO:0005488 binding *DEEP: 6 TERM: GO:0005509 calcium ion binding *DEEP: 0 TERM: GO:0030246 carbohydrate binding *DEEP: 0 TERM: GO:0008289 lipid binding *DEEP: 0 TERM: GO:0003676 nucleic acid binding *DEEP: 5 TERM: GO:0003677 DNA binding PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0003682 chromatin binding PROD: Zfrp8 *DEEP: 1 TERM: GO:0003700 transcription factor activity *DEEP: 0 TERM: GO:0004518 nuclease activity *DEEP: 0 TERM: GO:0003723 RNA binding PROD: Zn72D *DEEP: 1 TERM: GO:0008135 translation factor activity, nucleic acid binding *DEEP: 0 TERM: GO:0000166 nucleotide binding *DEEP: 0 TERM: GO:0019825 oxygen binding *DEEP: 0 TERM: GO:0005515 protein binding *DEEP: 1 TERM: GO:0008092 cytoskeletal protein binding PROD: zip *DEEP: 1 TERM: GO:0003779 actin binding *DEEP: 0 TERM: GO:0003824 catalytic activity PROD: Zw PROD: Zw *DEEP: 4 TERM: GO:0016787 hydrolase PROD: zip *DEEP: 1 TERM: GO:0008233 peptidase activity *DEEP: 0 TERM: GO:0004721 protein phosphatase activity *DEEP: 0 TERM: GO:0016301 kinase *DEEP: 1 TERM: GO:0004672 protein kinase activity PROD: Zwim *DEEP: 1 TERM: GO:0016740 transferase *DEEP: 0 TERM: GO:0005194 cell adhesion molecule activity *DEEP: 0 TERM: GO:0003754 chaperone activity *DEEP: 0 TERM: GO:0030188 chaperone regulator activity *DEEP: 0 TERM: GO:0003793 defense/immunity protein activity *DEEP: 0 TERM: GO:0030234 enzyme regulator activity *DEEP: 0 TERM: GO:0005554 molecular_function unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0003774 motor activity PROD: zip *DEEP: 1 TERM: GO:0045735 nutrient reservoir activity *DEEP: 0 TERM: GO:0017028 protein stabilization activity *DEEP: 0 TERM: GO:0008638 protein tagging activity *DEEP: 0 TERM: GO:0004871 signal transducer activity *DEEP: 0 TERM: GO:0004872 receptor activity *DEEP: 0 TERM: GO:0005102 receptor binding *DEEP: 0 TERM: GO:0005198 structural molecule activity PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 3 TERM: GO:0030528 transcription regulator activity PROD: zfh2 PROD: Zyx102EF *DEEP: 2 TERM: GO:0045182 translation regulator *DEEP: 0 TERM: GO:0005215 transporter activity PROD: ZIP1 PROD: Zip3 PROD: zpg *DEEP: 3 TERM: GO:0005489 electron transporter activity *DEEP: 0 TERM: GO:0005216 ion channel activity *DEEP: 0 TERM: GO:0005326 neurotransmitter transporter activity *DEEP: 0 TERM: GO:0030533 triplet codon-amino acid adaptor activity *DEEP: 0 TERM: part_of part_of *DEEP: 0 ok 3 annots: 86 ok 4 Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene ok 5 ok t/t080gofmt2.t ........... 1..3 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:07 2024 # Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ok 1 ok 2 '(term (id "GO:0003673") (name "Gene_Ontology") (is_root "1") (namespace "Gene_Ontology")) '(term (id "GO:0003674") (name "molecular_function") (namespace "molecular_function") (relationship (type "part_of") (to "GO:0003673"))) '(term (id "X:1") (name "zoo") (namespace "molecular_function") (is_a "GO:0003674")) '(term (id "X:2") (name "goo") (namespace "molecular_function") (relationship (type "inverse_of") (to "X:1"))) '(term (id "X;3") (name "poo") (namespace "molecular_function") (relationship (type "disjoint_from") (to "X:2"))) '(term (id "X:5") (name "ooh") (namespace "molecular_function") (relationship (type "star") (to "X;3"))) '(term (id "X:6") (name "moo") (namespace "molecular_function") (relationship (type "hash") (to "X:5"))) ok 3 ok t/t100roundtrip.t ........ 1..2 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:07 2024 # Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml ./t/data/test-function.dat from:go_ont to:rdf ./t/data/test-function.dat from:go_ont to:pathlist ./t/data/test-function.dat from:go_ont to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat from:go_ont to:obo_text ./t/data/test-function.dat.obo_text from:obo_text to:prolog ./t/data/test-function.dat.obo_text from:obo_text to:rdf ./t/data/test-function.dat.obo_text from:obo_text to:pathlist ./t/data/test-function.dat.obo_text from:obo_text to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat.obo_text from:obo_text to:obo_xml ./t/data/test-function.dat.obo_text.obo_xml from:obo_xml to:go_ont ok 1 ./t/data/GO.defs from:go_def to:obo_xml ./t/data/GO.defs.obo_xml from:obo_xml to:go_def ok 2 ok t/t110basic.t ............ 1..4 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:08 2024 # Current time GMT: Thu Nov 21 01:13:08 2024 # Using Test.pm version 1.31 GO:0016604 GO:0016604 ok 1 PARENTS nucleoplasm ok 2 Gene_Ontology cell cellular_component intracellular nucleoplasm nucleus ok 3 GO:0005654 RENT complex chromatin remodeling complex chromatin silencing complex nuclear body nuclear speck ok 4 GO:0005654 ok t/t130relations.t ........ 1..7 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:08 2024 # Current time GMT: Thu Nov 21 01:13:08 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 OBO_REL:part_of ok 7 ok t/t140subgraph.t ......... 1..1 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:09 2024 # Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 %nucleic acid binding ; GO:0003676 %DNA binding ; GO:0003677 %transcription factor ; GO:0003700 ; synonym:GO:0000130 ok 1 ok t/t150xref.t ............. 1..2 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:09 2024 # Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t160logicaldef.t ....... 1..5 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:09 2024 # Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ok 1 ns: biological_process ok 2 ldef ns: foo ok 3 GO:0007626 OBOL:during FBdv:00005336 GO:0007626 ok 4 ok 5 ok t/t170chadoxml.t ......... 1..9 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:09 2024 # Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:09 2024 # Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:09 2024 # Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 ok 2 ok 3 Phenylobacterium immobile {test} ok 4 ok t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:10 2024 # Current time GMT: Thu Nov 21 01:13:10 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t210cache.t ............ 1..6 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:10 2024 # Current time GMT: Thu Nov 21 01:13:10 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t220xref_esc.t ......... 1..6 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:10 2024 # Current time GMT: Thu Nov 21 01:13:10 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 UM-BBD_pathwayID:2,4,5-t UM-BBD_pathwayID:2,4,5-t ok 4 ok 5 ok 6 ok t/t230term_expression.t .. 1..1 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:10 2024 # Current time GMT: Thu Nov 21 01:13:10 2024 # Using Test.pm version 1.31 GO:1234 part_of CL:abc GO:1234 part_of CL:abc part_of AO:999 GO:1234 part_of CL:abc part_of AO:999 has_coordinate x:left GO:1234 results_in_output_of CHEBI:765 ^part_of CL:abc part_of AO:999 has_coordinate x:left ok 1 ok t/t240ga2obj.t ........... 1..3 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:11 2024 # Current time GMT: Thu Nov 21 01:13:11 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:11 2024 # Current time GMT: Thu Nov 21 01:13:11 2024 # Using Test.pm version 1.31 OBO_REL part_of part_of relationship internal is_transitive cvterm_property_type is_transitive 1 1 OBO_REL part_of ok 1 relationship ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:11 2024 # Current time GMT: Thu Nov 21 01:13:11 2024 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ (rdf:about "http://purl.org/obo/owl/OBO_REL#part_of")) (oboInOwl:hasOBONamespace "relationship") (oboInOwl:hasDbXref (oboInOwl:DbXref (rdfs:label "OBO_REL:part_of") (oboInOwl:hasURI (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#anyURI")) (. "http://purl.org/obo/owl/OBO_REL#OBO_REL_part_of" ))))) ok 1 http://purl.org/obo/owl/OBO_REL#part_of ok 2 '(owl:ObjectProperty (@ (rdf:about "http://purl.org/obo/owl/obo#foo")) (rdfs:label (@ (xml:lang "en")) (. "foo")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 3 '(owl:AnnotationProperty (@ (rdf:about "http://purl.org/obo/owl/obo#bar")) (rdfs:label (@ (xml:lang "en")) (. "bar")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 4 ok t/t290disjoint.t ......... 1..2 # Running under perl version 5.040000 for linux # Current time local: Thu Nov 21 01:13:11 2024 # Current time GMT: Thu Nov 21 01:13:11 2024 # Using Test.pm version 1.31 ok 1 GO:0009987 GO:0051704 ok 2 ok All tests successful. Files=24, Tests=140, 5 wallclock secs ( 0.17 usr 0.04 sys + 4.57 cusr 0.47 csys = 5.25 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libgo-perl/ make -j20 install DESTDIR=/build/reproducible-path/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' dh_install prename 's/\.pl//' /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/* prename 's/\.pl//' /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/*.pl* make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgo-perl' in '../libgo-perl_0.15-10_all.deb'. dpkg-genbuildinfo --build=binary -O../libgo-perl_0.15-10_amd64.buildinfo dpkg-genchanges --build=binary -O../libgo-perl_0.15-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/869384/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/869384/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/869384 and its subdirectories I: Current time: Thu Nov 21 15:13:18 +14 2024 I: pbuilder-time-stamp: 1732151598 + false + set +x Thu Nov 21 01:13:18 UTC 2024 I: Signing ./b2/libgo-perl_0.15-10_amd64.buildinfo as libgo-perl_0.15-10_amd64.buildinfo.asc Thu Nov 21 01:13:19 UTC 2024 I: Signed ./b2/libgo-perl_0.15-10_amd64.buildinfo as ./b2/libgo-perl_0.15-10_amd64.buildinfo.asc Thu Nov 21 01:13:19 UTC 2024 - build #2 for libgo-perl/trixie/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Thu Nov 21 01:13:19 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-fwbLXTMe, removing. /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah: total 128 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 01:12 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 01:13 b2 -rw-r--r-- 1 jenkins jenkins 2285 Dec 18 2023 libgo-perl_0.15-10.dsc -rw------- 1 jenkins jenkins 112112 Nov 21 01:12 rbuildlog.fyhzNhR /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b1: total 404 -rw-r--r-- 1 jenkins jenkins 108419 Nov 21 01:12 build.log -rw-r--r-- 1 jenkins jenkins 8476 Nov 21 01:12 libgo-perl_0.15-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2285 Nov 21 01:12 libgo-perl_0.15-10.dsc -rw-r--r-- 1 jenkins jenkins 251004 Nov 21 01:12 libgo-perl_0.15-10_all.deb -rw-r--r-- 1 jenkins jenkins 6140 Nov 21 01:12 libgo-perl_0.15-10_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7022 Nov 21 01:12 libgo-perl_0.15-10_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1163 Nov 21 01:12 libgo-perl_0.15-10_amd64.changes -rw-r--r-- 1 jenkins jenkins 1327 Nov 21 01:12 libgo-perl_0.15-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b2: total 396 -rw-r--r-- 1 jenkins jenkins 110328 Nov 21 01:13 build.log -rw-r--r-- 1 jenkins jenkins 8476 Nov 21 01:13 libgo-perl_0.15-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2285 Nov 21 01:13 libgo-perl_0.15-10.dsc -rw-r--r-- 1 jenkins jenkins 251004 Nov 21 01:13 libgo-perl_0.15-10_all.deb -rw-r--r-- 1 jenkins jenkins 6131 Nov 21 01:13 libgo-perl_0.15-10_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7013 Nov 21 01:13 libgo-perl_0.15-10_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1163 Nov 21 01:13 libgo-perl_0.15-10_amd64.changes -rw-r--r-- 1 jenkins jenkins 1327 Nov 21 01:13 libgo-perl_0.15-10_source.changes Thu Nov 21 01:13:19 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Nov 21 01:13:20 UTC 2024 I: libgo-perl_0.15-10_amd64.changes: Format: 1.8 Date: Mon, 18 Dec 2023 12:00:35 +0100 Source: libgo-perl Binary: libgo-perl Architecture: all Version: 0.15-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libgo-perl - perl modules for GO and other OBO ontologies Closes: 1046227 Changes: libgo-perl (0.15-10) unstable; urgency=medium . * Team upload. * d/clean: new: cleanup test artifacts. (Closes: #1046227) * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: b18a4e4152fb6a3c56ed1b2909527058c5bbe554 251004 libgo-perl_0.15-10_all.deb 8bfd641ac934e76e0f445ea9545fb8b83442a57f 6140 libgo-perl_0.15-10_amd64.buildinfo Checksums-Sha256: 8f2d8be19a68de797f4ed98a1c41bf275341d25620387a5828cc852f48187121 251004 libgo-perl_0.15-10_all.deb bd981a7aa9f1e557f8fc6d4c9ba3d7d9eb67cc0d5d8bca04a23eb45e5ac516c6 6140 libgo-perl_0.15-10_amd64.buildinfo Files: 76cadaf781f60b6e25e8683d90632235 251004 perl optional libgo-perl_0.15-10_all.deb 04a91ca4ecaf5d5d75902ae68aeaa7fd 6140 perl optional libgo-perl_0.15-10_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libgo-perl_0.15-10.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libgo-perl_0.15-10.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/libgo-perl_0.15-10.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/libgo-perl_0.15-10.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/libgo-perl_0.15-10_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libgo-perl_0.15-10.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-21 01:12:24.471566414 +0000 +++ b2/build.log 2024-11-21 01:13:19.541079484 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 23 19:28:57 -12 2025 -I: pbuilder-time-stamp: 1766561337 +I: Current time: Thu Nov 21 15:12:26 +14 2024 +I: pbuilder-time-stamp: 1732151546 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying spelling2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2162471/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/869384/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 21 01:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/869384/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/869384/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='069d32cafe34441db2c5373527c94cc1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2162471' - PS1='# ' - PS2='> ' + INVOCATION_ID=0ce1f8fc18da4ad29920d4cbf0cdf3a4 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=869384 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/pbuilderrc_MGGg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b1 --logfile b1/build.log libgo-perl_0.15-10.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/pbuilderrc_HpTa --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b2 --logfile b2/build.log libgo-perl_0.15-10.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2162471/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/869384/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -202,7 +234,7 @@ Get: 71 http://deb.debian.org/debian trixie/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 rename all 2.02-1 [21.8 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 xsltproc amd64 1.1.35-1.1+b1 [115 kB] -Fetched 27.4 MB in 26s (1065 kB/s) +Fetched 27.4 MB in 0s (56.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -526,7 +558,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgo-perl_0.15-10_source.changes +I: user script /srv/workspace/pbuilder/869384/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/869384/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libgo-perl_0.15-10_source.changes dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-10 dpkg-buildpackage: info: source distribution unstable @@ -548,126 +584,126 @@ Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build - make -j42 + make -j20 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' -cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm -cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm -cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm -cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm -cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm -cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm +cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm +cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm +cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm -cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm -cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm -cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm -cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm -cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm +cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm -cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm -cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm -cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm +cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm -cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm -cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm -cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm -cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm +cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm +cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm +cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm +cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm +cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm +cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm +cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm -cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm -cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm -cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm +cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm +cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm +cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm +cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm +cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm +cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm -cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm -cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm -cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm +cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm +cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm +cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm +cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm +cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm -cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm +cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm +cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm +cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm +cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm +cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm -cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm +cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/Basic.pm blib/lib/GO/Basic.pm -cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm -cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm -cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm -cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm -cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm -cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm -cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm +cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm +cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm -cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm -cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm +cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm +cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm -cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm -cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm -cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm +cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm -cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm -cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm -cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm -cp GO/Parser.pm blib/lib/GO/Parser.pm +cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm +cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm +cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm +cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm -cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm -cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm -cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm +cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm +cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm +cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm -cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm -cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm -cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm -cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm -cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm -cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm -cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm -cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm -cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm -cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm -cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm -cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm -cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm +cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Parser.pm blib/lib/GO/Parser.pm +cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm -cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl +cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm +cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm +cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm +cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm +cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm +cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm +cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm +cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm +cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm +cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm +cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm +cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm +cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm +cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm +cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl +cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl -cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm -cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm -cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm -cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl -cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl -cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl -cp GO/Utils.pm blib/lib/GO/Utils.pm -cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl -cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl -cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl -cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl -cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl -cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl -cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm -cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl +cp GO/Utils.pm blib/lib/GO/Utils.pm cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl +cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl +cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl +cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl +cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm +cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl +cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl +cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl +cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl cp go-perl.pod blib/lib/go-perl.pod +cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm +cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl +cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm +cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm +cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm cp scripts/go-apply-xslt blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl +cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl -cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl -cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl +cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl +cp scripts/go2chadoxml blib/script/go2chadoxml +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl -cp scripts/go2chadoxml blib/script/go2chadoxml cp scripts/go2error_report blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml @@ -675,33 +711,33 @@ "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore cp scripts/go2obo blib/script/go2obo +cp scripts/go2obo_html blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo -cp scripts/go2obo_html blib/script/go2obo_html -cp scripts/go2obo_text blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html +cp scripts/go2obo_text blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text cp scripts/go2obo_xml blib/script/go2obo_xml -cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml +cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl cp scripts/go2pathlist blib/script/go2pathlist -cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist +cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog cp scripts/go2rdf blib/script/go2rdf -cp scripts/go2rdfxml blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf +cp scripts/go2rdfxml blib/script/go2rdfxml cp scripts/go2summary blib/script/go2summary -cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2summary +cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr cp scripts/go2tbl blib/script/go2tbl cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl -cp scripts/go2xml blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html +cp scripts/go2xml blib/script/go2xml cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim @@ -710,14 +746,14 @@ Manifying 33 pod documents make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' dh_auto_test - make -j42 test TEST_VERBOSE=1 + make -j20 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:08 2025 -# Current time GMT: Wed Dec 24 07:35:08 2025 +# Current time local: Thu Nov 21 01:13:06 2024 +# Current time GMT: Thu Nov 21 01:13:06 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -729,8 +765,8 @@ t/t020paths.t ............ 1..7 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:09 2025 -# Current time GMT: Wed Dec 24 07:35:09 2025 +# Current time local: Thu Nov 21 01:13:06 2024 +# Current time GMT: Thu Nov 21 01:13:06 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -743,8 +779,8 @@ t/t030detecterror.t ...... 1..4 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:09 2025 -# Current time GMT: Wed Dec 24 07:35:09 2025 +# Current time local: Thu Nov 21 01:13:06 2024 +# Current time GMT: Thu Nov 21 01:13:06 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -786,234 +822,234 @@ t/t050oboformat.t ........ 1..6 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:09 2025 -# Current time GMT: Wed Dec 24 07:35:09 2025 +# Current time local: Thu Nov 21 01:13:07 2024 +# Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ok 1 ok 2 -ROOT: cellular_component ROOT: biological_process ROOT: molecular_function +ROOT: cellular_component ok 3 ok 4 -EDGE|GO:0008148|GO:0003711|is_a -EDGE|GO:0003709|GO:0003700|is_a -EDGE|GO:0008461|GO:0003824|is_a -EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0005626|GO:0000267|is_a -EDGE|GO:0003710|GO:0003700|is_a -EDGE|GO:0000133|GO:0005935|part_of -EDGE|GO:0000142|GO:0005935|part_of -EDGE|GO:0005935|GO:0005933|part_of -EDGE|GO:0005935|GO:0000134|is_a -EDGE|GO:0003677|GO:0003676|is_a -EDGE|GO:0003676|GO:0003674|is_a -EDGE|GO:0000150|GO:0003690|is_a +EDGE|GO:0003697|GO:0003677|is_a +EDGE|GO:0003689|GO:0003687|is_a +EDGE|GO:0003688|GO:0003687|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003690|GO:0003677|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0003825|GO:0003824|is_a -EDGE|GO:0008488|GO:0003824|is_a -EDGE|GO:0008456|GO:0003824|is_a -EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003678|GO:0004386|is_a +EDGE|GO:0003678|GO:0003677|is_a +EDGE|GO:0003691|GO:0003720|is_a +EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0003905|GO:0003824|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0000144|GO:0030481|is_a +EDGE|GO:0000144|GO:0000142|part_of +EDGE|GO:0003721|GO:0003964|is_a +EDGE|GO:0003721|GO:0003720|is_a +EDGE|GO:0005624|GO:0000267|is_a +EDGE|GO:0005626|GO:0000267|is_a +EDGE|GO:0000267|GO:0005623|part_of +EDGE|GO:0003704|GO:0003702|is_a +EDGE|GO:0003677|GO:0003676|is_a +EDGE|GO:0003676|GO:0003674|is_a +EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003720|GO:0003677|is_a -EDGE|GO:0003840|GO:0003824|is_a -EDGE|GO:0043025|GO:0005623|part_of -EDGE|GO:0003707|GO:0003706|is_a -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0003704|GO:0003702|is_a +EDGE|GO:0003695|GO:0003677|is_a +EDGE|GO:0003907|GO:0003686|is_a +EDGE|GO:0003907|GO:0008578|is_a +EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0003703|GO:0003702|is_a +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0004844|GO:0003686|is_a +EDGE|GO:0008263|GO:0003686|is_a +EDGE|GO:0003907|GO:0003686|is_a +EDGE|GO:0003686|GO:0003824|is_a +EDGE|GO:0003686|GO:0003685|is_a +EDGE|GO:0003832|GO:0003824|is_a +EDGE|GO:0008416|GO:0003824|is_a +EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003706|GO:0003702|is_a +EDGE|GO:0003703|GO:0003702|is_a +EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003702|GO:0003700|is_a -EDGE|GO:0003708|GO:0004879|is_a -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0008159|GO:0003711|is_a -EDGE|GO:0000133|GO:0005935|part_of -EDGE|GO:0000133|GO:0005938|part_of -EDGE|GO:0000133|GO:0005934|part_of -EDGE|GO:0000144|GO:0030481|is_a -EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0003680|GO:0003677|is_a -EDGE|GO:0043025|GO:0005623|part_of -EDGE|GO:0005933|GO:0005623|part_of -EDGE|GO:0000267|GO:0005623|part_of -EDGE|GO:0005623|GO:0005575|is_a -EDGE|GO:0003907|GO:0008578|is_a -EDGE|GO:0003907|GO:0003686|is_a +EDGE|GO:0008456|GO:0003824|is_a +EDGE|GO:0008534|GO:0008578|is_a 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# Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:09 2025 -# Current time GMT: Wed Dec 24 07:35:09 2025 +# Current time local: Thu Nov 21 01:13:07 2024 +# Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 -ROOT: root ROOT: Part of -ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase +ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: root TERMS: 29 DEFXREFS:GO:jic EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a -DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a +SYNS:FAKE:0001|fake synonym|class I PI3K +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:curators -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0042595|GO:0042594|is_a +EDGE|GO:0042595|GO:0007631|is_a +SYNS:behaviour +DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0048149|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007629|GO:0008344|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:GO:curators +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0008150|root|is_a +DEFXREFS:GO:ai +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a -SYNS:behaviour -DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab +DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a -SYNS:class I PI3K|FAKE:0001|fake synonym -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042595|GO:0042594|is_a -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0045471|is_a -EDGE|GO:0048149|GO:0030534|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0001662|GO:0007610|is_a -DEFXREFS:GO:ai -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008344|GO:0007626|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1157,112 +1193,112 @@ ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 -ROOT: root +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: Part of ROOT: 1-phosphatidylinositol-4-phosphate kinase -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase +ROOT: root TERMS: 29 -DEFXREFS:WB:cab|PMID:2181052 +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0048265|is_a -EDGE|GO:0048266|GO:0007610|is_a +DEFXREFS:GO:mah|ISBN:0877797099 +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0048149|GO:0030534|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a -SYNS:fake synonym|FAKE:0001|class I PI3K +SYNS:class I PI3K|FAKE:0001|fake synonym EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a -DEFXREFS:GO:ai -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0008150|root|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0042630|GO:0007610|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a -DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:GO:curators -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007636|GO:0007635|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0035094|is_a +EDGE|GO:0035095|GO:0030534|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0048266|GO:0007610|is_a DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:GO:jic|ISBN:0198606907 +DEFXREFS:GO:ai EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a +EDGE|GO:0007636|GO:0007630|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1286,112 +1322,112 @@ ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 +ROOT: root ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase -ROOT: root ROOT: Part of TERMS: 29 -DEFXREFS:GO:curators +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0048266|GO:0048265|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0007636|GO:0007630|is_a +DEFXREFS:GO:ai +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:GO:curators +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a +SYNS:behavioral response to drought|behavioral response to thirst +DEFXREFS:GO:jl +EDGE|GO:0042630|GO:0009414|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a -SYNS:behavioral response to drought|behavioral response to thirst -DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0042630|GO:0009414|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a -DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a -SYNS:fake synonym|class I PI3K|FAKE:0001 +SYNS:FAKE:0001|fake synonym|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a -DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0001662|GO:0007610|is_a -DEFXREFS:GO:ai -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0008344|GO:0030534|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a +EDGE|GO:0042595|GO:0042594|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a +DEFXREFS:GO:jic +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0048149|GO:0030534|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1415,8 +1451,8 @@ t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:10 2025 -# Current time GMT: Wed Dec 24 07:35:10 2025 +# Current time local: Thu Nov 21 01:13:07 2024 +# Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1808,8 +1844,8 @@ t/t080gofmt2.t ........... 1..3 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:10 2025 -# Current time GMT: Wed Dec 24 07:35:10 2025 +# Current time local: Thu Nov 21 01:13:07 2024 +# Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1863,8 +1899,8 @@ t/t100roundtrip.t ........ 1..2 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:11 2025 -# Current time GMT: Wed Dec 24 07:35:11 2025 +# Current time local: Thu Nov 21 01:13:07 2024 +# Current time GMT: Thu Nov 21 01:13:07 2024 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml @@ -1892,8 +1928,8 @@ t/t110basic.t ............ 1..4 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:11 2025 -# Current time GMT: Wed Dec 24 07:35:11 2025 +# Current time local: Thu Nov 21 01:13:08 2024 +# Current time GMT: Thu Nov 21 01:13:08 2024 # Using Test.pm version 1.31 GO:0016604 GO:0016604 @@ -1911,8 +1947,8 @@ t/t130relations.t ........ 1..7 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:12 2025 -# Current time GMT: Wed Dec 24 07:35:12 2025 +# Current time local: Thu Nov 21 01:13:08 2024 +# Current time GMT: Thu Nov 21 01:13:08 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1926,8 +1962,8 @@ t/t140subgraph.t ......... 1..1 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:12 2025 -# Current time GMT: Wed Dec 24 07:35:12 2025 +# Current time local: Thu Nov 21 01:13:09 2024 +# Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 @@ -1939,8 +1975,8 @@ t/t150xref.t ............. 1..2 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:12 2025 -# Current time GMT: Wed Dec 24 07:35:12 2025 +# Current time local: Thu Nov 21 01:13:09 2024 +# Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1948,8 +1984,8 @@ t/t160logicaldef.t ....... 1..5 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:12 2025 -# Current time GMT: Wed Dec 24 07:35:12 2025 +# Current time local: Thu Nov 21 01:13:09 2024 +# Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ok 1 ns: biological_process @@ -1965,8 +2001,8 @@ t/t170chadoxml.t ......... 1..9 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:12 2025 -# Current time GMT: Wed Dec 24 07:35:12 2025 +# Current time local: Thu Nov 21 01:13:09 2024 +# Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1981,8 +2017,8 @@ t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:12 2025 -# Current time GMT: Wed Dec 24 07:35:12 2025 +# Current time local: Thu Nov 21 01:13:09 2024 +# Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1997,8 +2033,8 @@ t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:13 2025 -# Current time GMT: Wed Dec 24 07:35:13 2025 +# Current time local: Thu Nov 21 01:13:09 2024 +# Current time GMT: Thu Nov 21 01:13:09 2024 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 @@ -2010,8 +2046,8 @@ t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:13 2025 -# Current time GMT: Wed Dec 24 07:35:13 2025 +# Current time local: Thu Nov 21 01:13:10 2024 +# Current time GMT: Thu Nov 21 01:13:10 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2019,8 +2055,8 @@ t/t210cache.t ............ 1..6 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:13 2025 -# Current time GMT: Wed Dec 24 07:35:13 2025 +# Current time local: Thu Nov 21 01:13:10 2024 +# Current time GMT: Thu Nov 21 01:13:10 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2032,8 +2068,8 @@ t/t220xref_esc.t ......... 1..6 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:13 2025 -# Current time GMT: Wed Dec 24 07:35:13 2025 +# Current time local: Thu Nov 21 01:13:10 2024 +# Current time GMT: Thu Nov 21 01:13:10 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2047,8 +2083,8 @@ t/t230term_expression.t .. 1..1 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:13 2025 -# Current time GMT: Wed Dec 24 07:35:13 2025 +# Current time local: Thu Nov 21 01:13:10 2024 +# Current time GMT: Thu Nov 21 01:13:10 2024 # Using Test.pm version 1.31 @@ -2143,8 +2179,8 @@ t/t240ga2obj.t ........... 1..3 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:13 2025 -# Current time GMT: Wed Dec 24 07:35:13 2025 +# Current time local: Thu Nov 21 01:13:11 2024 +# Current time GMT: Thu Nov 21 01:13:11 2024 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2153,11 +2189,11 @@ t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:13 2025 -# Current time GMT: Wed Dec 24 07:35:13 2025 +# Current time local: Thu Nov 21 01:13:11 2024 +# Current time GMT: Thu Nov 21 01:13:11 2024 # Using Test.pm version 1.31 - + OBO_REL @@ -2206,8 +2242,8 @@ t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:14 2025 -# Current time GMT: Wed Dec 24 07:35:14 2025 +# Current time local: Thu Nov 21 01:13:11 2024 +# Current time GMT: Thu Nov 21 01:13:11 2024 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ @@ -2255,8 +2291,8 @@ t/t290disjoint.t ......... 1..2 # Running under perl version 5.040000 for linux -# Current time local: Wed Dec 24 07:35:14 2025 -# Current time GMT: Wed Dec 24 07:35:14 2025 +# Current time local: Thu Nov 21 01:13:11 2024 +# Current time GMT: Thu Nov 21 01:13:11 2024 # Using Test.pm version 1.31 ok 1 GO:0009987 @@ -2264,227 +2300,227 @@ ok 2 ok All tests successful. -Files=24, Tests=140, 6 wallclock secs ( 0.13 usr 0.04 sys + 2.80 cusr 0.32 csys = 3.29 CPU) +Files=24, Tests=140, 5 wallclock secs ( 0.17 usr 0.04 sys + 4.57 cusr 0.47 csys = 5.25 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libgo-perl/ - make -j42 install DESTDIR=/build/reproducible-path/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j20 install DESTDIR=/build/reproducible-path/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr -Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml +Installing /build/reproducible-path/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl make[1]: Leaving directory '/build/reproducible-path/libgo-perl-0.15' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgo-perl-0.15' @@ -2513,12 +2549,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/869384/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/869384/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2162471 and its subdirectories -I: Current time: Tue Dec 23 19:35:23 -12 2025 -I: pbuilder-time-stamp: 1766561723 +I: removing directory /srv/workspace/pbuilder/869384 and its subdirectories +I: Current time: Thu Nov 21 15:13:18 +14 2024 +I: pbuilder-time-stamp: 1732151598 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libgo-perl_0.15-10.diff: 88.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libgo-perl_0.15-10.diff.gz b2/build.log: 83.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 83.9% -- replaced with stdout Thu Nov 21 01:13:21 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libgo-perl_trixie_amd64_1732151601 + touch /var/log/reproducible-builds/diffoscope_stamp_libgo-perl_trixie_amd64_1732151601 + RESULT=0 + systemd-run '--description=diffoscope on libgo-perl/0.15-10 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_14-24194 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah --run-session -c jenkins-reproducible-trixie-diffoscope-a5cf501b-0aaa-40cc-a260-846cf162e9fe -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/dbd-tmp-EJOwOWF ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/libgo-perl_0.15-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/libgo-perl_0.15-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/libgo-perl_0.15-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b1/libgo-perl_0.15-10_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b2/libgo-perl_0.15-10_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_14-24194.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/libgo-perl_0.15-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/libgo-perl_0.15-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/libgo-perl_0.15-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b1/libgo-perl_0.15-10_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.d9fV5Eah/b2/libgo-perl_0.15-10_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.368s) 0.368s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 710ms CPU time consumed: 711ms _ _ _ _ | (_) |__ __ _ ___ _ __ ___ _ __| | | | | '_ \ / _` |/ _ \ _____| '_ \ / _ \ '__| | | | | |_) | (_| | (_) |_____| |_) | __/ | | | |_|_|_.__/ \__, |\___/ | .__/ \___|_| |_| |___/ |_| Thu Nov 21 01:13:22 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 21 01:13:22 UTC 2024 I: libgo-perl from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-21 01:13:22] INFO: Starting at 2024-11-21 01:13:22.823951 [2024-11-21 01:13:22] INFO: Generating the pages of 1 package(s) [2024-11-21 01:13:23] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/libgo-perl didn't produce a buildlog, even though it has been built. [2024-11-21 01:13:23] INFO: Finished at 2024-11-21 01:13:23.437485, took: 0:00:00.613541 Thu Nov 21 01:13:23 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/libgo-perl.html Thu Nov 21 01:13:23 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 21 01:13:23 UTC 2024 I: Submitting 8.0K b1/libgo-perl_0.15-10_amd64.buildinfo.asc https://buildinfo.debian.net/8bfd641ac934e76e0f445ea9545fb8b83442a57f/libgo-perl_0.15-10_all Thu Nov 21 01:13:24 UTC 2024 I: Submitting 8.0K b2/libgo-perl_0.15-10_amd64.buildinfo.asc https://buildinfo.debian.net/f27fcb7b4cf830d50adb9b553a642e0268c0ccfe/libgo-perl_0.15-10_all Thu Nov 21 01:13:25 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 21 01:13:25 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 21 01:13:25 UTC 2024 I: Removing signed libgo-perl_0.15-10_amd64.buildinfo.asc files: removed './b1/libgo-perl_0.15-10_amd64.buildinfo.asc' removed './b2/libgo-perl_0.15-10_amd64.buildinfo.asc' 1732151605 amd64 trixie libgo-perl Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libgo-perl_0.15-10.rbuild.log: 82.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libgo-perl_0.15-10.rbuild.log.gz [2024-11-21 01:13:25] INFO: Starting at 2024-11-21 01:13:25.382293 [2024-11-21 01:13:25] INFO: Generating the pages of 1 package(s) [2024-11-21 01:13:26] INFO: Finished at 2024-11-21 01:13:26.079910, took: 0:00:00.697626 All cleanup done. Thu Nov 21 01:13:26 UTC 2024 - total duration: 0h 7m 52s. Thu Nov 21 01:13:26 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-ga8rVf1Z, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 7min 55.306s CPU time consumed: 7.959s