Running as unit: rb-build-amd64_14-60364.service; invocation ID: 64b656e4d1e347f49a70020c9e6d5ca6 ==================================================================================== Fri Oct 31 01:44:13 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_14) on jenkins, called using "ionos5-amd64 ionos11-amd64" as arguments. Fri Oct 31 01:44:13 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-e7SndxLr" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 01:44:13 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Oct 31 01:44:13 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-o1vuYP' Fri Oct 31 01:44:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 01:44:15 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-v9GG6Y' ok, let's check if kalign is building anywhere yet… ok, kalign is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of kalign in forky on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Fri Oct 31 01:44:28 UTC 2025 I: starting to build kalign/forky/amd64 on jenkins on '2025-10-31 01:44' Fri Oct 31 01:44:28 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/60364/console.log 1761875068 amd64 forky kalign Fri Oct 31 01:44:28 UTC 2025 I: Downloading source for forky/kalign=1:3.4.0-1 --2025-10-31 01:44:28-- http://deb.debian.org/debian/pool/main/k/kalign/kalign_3.4.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1962 (1.9K) [text/prs.lines.tag] Saving to: ‘kalign_3.4.0-1.dsc’ 0K . 100% 19.7M=0s 2025-10-31 01:44:28 (19.7 MB/s) - ‘kalign_3.4.0-1.dsc’ saved [1962/1962] --2025-10-31 01:44:28-- http://deb.debian.org/debian/pool/main/k/kalign/kalign_3.4.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1962 (1.9K) [text/prs.lines.tag] Saving to: ‘kalign_3.4.0-1.dsc’ 0K . 100% 19.7M=0s 2025-10-31 01:44:28 (19.7 MB/s) - ‘kalign_3.4.0-1.dsc’ saved [1962/1962] Fri Oct 31 01:44:28 UTC 2025 I: kalign_3.4.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kalign Binary: kalign Architecture: any Version: 1:3.4.0-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: https://msa.sbc.su.se/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/kalign Vcs-Git: https://salsa.debian.org/med-team/kalign.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake Package-List: kalign deb science optional arch=any Checksums-Sha1: 3a843c18bd6337b80b373815e2ec4b73ce53f3ab 903277 kalign_3.4.0.orig.tar.gz 580fd65a94ca1e2cc4bcd70588708fa680c5195f 12372 kalign_3.4.0-1.debian.tar.xz Checksums-Sha256: 67d1a562d54b3b7622cc3164588c05b9e2bf8f1a5140bb48a4e816c61a87d4a8 903277 kalign_3.4.0.orig.tar.gz 83643a83685ef7b3da11348ccb6d3b5c22478547b46a8b88288530a6c00cf8bc 12372 kalign_3.4.0-1.debian.tar.xz Files: 52243b10203d6ce97ade643638571c1e 903277 kalign_3.4.0.orig.tar.gz 6a79c99575fec3b663aa9b0ce68b277e 12372 kalign_3.4.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYL8UcACgkQPCZ2P2xn 5uIriw//TWTZYvOK72oNuNPUktDVviVZq8AV8m0P0gCb/LHX04PB76lT2j3qBStq KBkSwq4Wb9CvGXBvHUooQldK/yT7Y1elltnTDOhMXGwHsgBemF8zBUY1Cc3miXEu 4dF5pKd327uo4HROZqPkEWHMEcxq7ldXYdvbjFKqsKNqNvjLvEcrFOKtIIdaKpCm ImRJnFYEXiQwskUHjZjnnM0V59o4ZjizgQfxt1T/YpGzKx4xV9S6LbHQ2jf0VVf4 dZ2KEvjN9IhMEcOfPIVWj4V22IXQKp3QQV0JyVWz0jommBpVAENpigftCSvQTv7s +Ff4XcJQshiF+h8gZDTuneTCruS2wBYNS9gU127hKZ/dD8T34N0o80xnxll2ETLE KaMH5CIWMNUqd3vwNUm6RJXfvswY5KAf+iPShTkXNAsZbXHcNRVoZNtIY5FoSNt1 dvu5SfIXJjWpzhBPjBh+V2N974UYw+GSUAraWVNKAjnUJGiyyo9bLgDwNT0imPgh k/is6QD0s7KFQMT86HshRfEXpVsvbzvZ4a33jSMROInA6bwZDh2ugnYYKLvyDJM3 ZhdV4pptTaHbo6clU+2c2sLJekNLP6lwCBfA/0AzOyVzacAuJ16oPk85LmcExZVH ROh0Ts3BkKOTpRCs0vrlN0Ikcb1pEGxjjyvnUsO+VWjwFSWBq68= =OLrO -----END PGP SIGNATURE----- Fri Oct 31 01:44:28 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 01:44:28 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Fri Oct 31 01:44:28 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Fri Oct 31 01:44:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Oct 31 01:44:28 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-BpZIxg' ==================================================================================== Thu Dec 3 08:07:32 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 kalign forky /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL 1:3.4.0-1" as arguments. Thu Dec 3 08:07:32 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-goi6bJ8f" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 3 08:07:32 UTC 2026 I: Downloading source for forky/kalign=1:3.4.0-1 Reading package lists... NOTICE: 'kalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kalign.git Please use: git clone https://salsa.debian.org/med-team/kalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 918 kB of source archives. Get:1 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (dsc) [1962 B] Get:2 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (tar) [903 kB] Get:3 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (diff) [12.4 kB] Fetched 918 kB in 0s (22.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'kalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kalign.git Please use: git clone https://salsa.debian.org/med-team/kalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 918 kB of source archives. Get:1 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (dsc) [1962 B] Get:2 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (tar) [903 kB] Get:3 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (diff) [12.4 kB] Fetched 918 kB in 0s (22.1 MB/s) Download complete and in download only mode ============================================================================= Building kalign in forky on amd64 on ionos5-amd64 now. Date: Thu Dec 3 08:07:32 UTC 2026 Date UTC: Thu Dec 3 08:07:32 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 2 20:07:33 -12 2026 I: pbuilder-time-stamp: 1796285253 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kalign_3.4.0-1.dsc] I: copying [./kalign_3.4.0.orig.tar.gz] I: copying [./kalign_3.4.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kalign_3.4.0-1.dsc: no acceptable signature found dpkg-source: info: extracting kalign in kalign-3.4.0 dpkg-source: info: unpacking kalign_3.4.0.orig.tar.gz dpkg-source: info: unpacking kalign_3.4.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3840511/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='99011a476b254ca2b468cc788009e56a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3840511' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/pbuilderrc_iauw --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b1 --logfile b1/build.log kalign_3.4.0-1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3840511/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libsimde-dev, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 32.4 MB of archives. After unpacking 124 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 56 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Fetched 32.4 MB in 2s (17.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_4.1.1+really3.31.6-2_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../19-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-4+b1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../21-libnghttp3-9_1.12.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../22-libngtcp2-16_1.16.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.16.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../23-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../24-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../25-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../26-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../27-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../28-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../29-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../30-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../31-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../32-libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../33-libsasl2-2_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../34-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../35-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:amd64. Preparing to unpack .../36-libngtcp2-crypto-ossl0_1.16.0-1_amd64.deb ... Unpacking libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../37-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../38-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../39-libp11-kit0_0.25.9-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../40-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../41-libgnutls30t64_3.8.10-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.10-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../42-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../43-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../44-libcurl4t64_8.17.0~rc2-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.17.0~rc2-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../45-libjsoncpp26_1.9.6-4_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-4) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../46-librhash1_1.4.6-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../47-libuv1t64_1.51.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../48-cmake_4.1.1+really3.31.6-2_amd64.deb ... Unpacking cmake (4.1.1+really3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../49-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../50-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../51-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../52-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../53-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../54-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../55-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../56-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package gettext. Preparing to unpack .../57-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../58-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../59-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../60-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../61-libsimde-dev_0.8.2-3_all.deb ... Unpacking libsimde-dev (0.8.2-3) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-3) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libcurl4t64:amd64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes dpkg-buildpackage: info: source package kalign dpkg-buildpackage: info: source version 1:3.4.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_auto_configure -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=OFF -DENABLE_AVX=OFF -DENABLE_AVX2=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=OFF -DENABLE_AVX=OFF -DENABLE_AVX2=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (4.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu dh_auto_configure --builddirectory obj-sse4.1 -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=OFF -DENABLE_AVX2=OFF cd obj-sse4.1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=OFF -DENABLE_AVX2=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test HAVE_SSE -- Performing Test HAVE_SSE - Success -- SSE4.1 is enabled - target CPU must support it -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (6.9s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-sse4.1 dh_auto_configure --builddirectory obj-avx -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=OFF cd obj-avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test HAVE_SSE -- Performing Test HAVE_SSE - Success -- SSE4.1 is enabled - target CPU must support it -- Performing Test HAVE_AVX -- Performing Test HAVE_AVX - Success -- AVX is enabled - target CPU must support it -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (11.6s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-avx dh_auto_configure --builddirectory obj-avx2 -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=ON cd obj-avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test HAVE_SSE -- Performing Test HAVE_SSE - Success -- SSE4.1 is enabled - target CPU must support it -- Performing Test HAVE_AVX -- Performing Test HAVE_AVX - Success -- AVX is enabled - target CPU must support it -- Performing Test HAVE_AVX2 -- Performing Test HAVE_AVX2 - Success -- AVX2 is enabled - target CPU must support it -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (8.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-avx2 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 4%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o [ 5%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o [ 8%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o [ 8%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o [ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c [ 10%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o [ 16%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o [ 17%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o [ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 18%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 20%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c [ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 25%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 28%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o [ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 33%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 37%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o [ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c [ 44%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o [ 45%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c [ 66%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 67%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake [ 67%] Built target bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 68%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 [ 70%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 [ 70%] Built target tldevel [ 71%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 71%] Built target alphabet_utest [ 71%] Built target task_utest /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm [ 71%] Built target kalign_OBJ make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 72%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake [ 74%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 [ 74%] Built target edist_utest /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 74%] Built target kalign_static [ 74%] Built target kalign make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 75%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o [ 77%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c [ 78%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c [ 79%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c [ 81%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o [ 82%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o [ 83%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 85%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o [ 86%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 87%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c [ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp [ 90%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 91%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 91%] Built target kalign_cmp_test /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 [ 93%] Built target kalign_io_test [ 94%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 95%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 [ 97%] Linking C executable kalignfmt [ 97%] Built target kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 97%] Built target kalign-bin [ 97%] Built target largebench /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 97%] Built target kalignfmt [ 98%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 [100%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [100%] Built target dssim [100%] Built target kaligncpp make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build --builddirectory obj-sse4.1 cd obj-sse4.1 && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build [ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o [ 6%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 5%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o [ 8%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 9%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o [ 10%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o [ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o [ 16%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 17%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 18%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o [ 20%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o [ 22%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o [ 22%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c [ 28%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o [ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o [ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o [ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 37%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c [ 39%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 40%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c [ 41%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c [ 67%] Linking C static library libtldevel.a [ 67%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 67%] Built target alphabet_utest /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 68%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 [ 70%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 [ 70%] Built target tldevel /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm [ 70%] Built target kalign_OBJ make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" [ 70%] Built target edist_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm [ 72%] Linking C static library libkalign_static.a [ 72%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 [ 72%] Built target task_utest [ 74%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 74%] Built target kalign [ 74%] Built target kalign_static [ 74%] Built target bpm_utest make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 75%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build [ 77%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o [ 78%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 79%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c [ 81%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c [ 82%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c [ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o [ 86%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c [ 87%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 90%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 [ 91%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 94%] Linking C executable kalignfmt [ 95%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 95%] Built target kalign_lib_test [ 95%] Built target kalign_io_test [ 97%] Linking C executable largebench [ 97%] Built target kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 97%] Built target kalignfmt /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 97%] Built target kalign-bin [ 97%] Built target largebench [ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [100%] Built target dssim /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [100%] Built target kaligncpp make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' dh_auto_build --builddirectory obj-avx cd obj-avx && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 2%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o [ 4%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o [ 5%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o [ 6%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o [ 10%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o [ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 14%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o [ 16%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 13%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 17%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 18%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 20%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o [ 22%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o [ 24%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o [ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c [ 29%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 33%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o [ 35%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c [ 39%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o [ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 66%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 [ 67%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 67%] Built target edist_utest /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 67%] Built target task_utest [ 68%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 [ 70%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 [ 71%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 71%] Built target tldevel /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 71%] Built target alphabet_utest [ 71%] Built target bpm_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 71%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 72%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake [ 74%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 74%] Built target kalign make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend [ 74%] Built target kalign_static make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 75%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 78%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o [ 78%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp [ 79%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 81%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o [ 82%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c [ 83%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c [ 87%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o [ 87%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 89%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 90%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 [ 91%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 93%] Built target kalign_io_test [ 93%] Built target kalign_cmp_test [ 94%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 94%] Built target kalign_lib_test /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 95%] Linking C executable kalignfmt cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 [ 95%] Built target kalign-bin [ 97%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 97%] Built target kalignfmt /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 97%] Built target largebench [ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 98%] Built target dssim [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [100%] Built target kaligncpp make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' dh_auto_build --builddirectory obj-avx2 cd obj-avx2 && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx2/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 1%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o [ 2%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o [ 8%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 8%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 10%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o [ 10%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c [ 13%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o [ 13%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o [ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 14%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 16%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o [ 17%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 18%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o [ 20%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 21%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 22%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 25%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o [ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o [ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o [ 32%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c [ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c [ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 66%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 67%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 67%] Built target tldevel [ 67%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest [ 68%] Linking C static library libkalign_static.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake [ 70%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 [ 70%] Built target alphabet_utest /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 70%] Built target kalign_static make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend [ 70%] Built target kalign make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 71%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o [ 72%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o [ 74%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c [ 75%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c [ 77%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 79%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c [ 82%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o [ 82%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o [ 83%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o [ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c [ 86%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 87%] Linking C executable kalign_cmp_test [ 89%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 90%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 [ 90%] Built target bpm_utest [ 91%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 93%] Linking C executable kalignfmt cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 93%] Built target kalign_cmp_test [ 93%] Built target kalign_io_test [ 94%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 [ 95%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 95%] Built target kalign_lib_test [ 95%] Built target edist_utest [ 95%] Built target kalignfmt [ 97%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 97%] Built target task_utest [ 97%] Built target kalign-bin /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 97%] Built target largebench [ 98%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 [100%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [100%] Built target dssim /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [100%] Built target kaligncpp make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_test cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 1: Test timeout computed to be: 1500 test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 2: Test timeout computed to be: 1500 test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 3: Test timeout computed to be: 1500 test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 4: Test timeout computed to be: 1500 test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 1: LEN: 256 1: [2026-12-03 08:09:58] : LOG : Testing correctness of serial bpm. 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 3: [2026-12-03 08:09:58] : LOG : Check for correctness. 3: [2026-12-03 08:09:58] : LOG : Timing serial 3: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 4: 460 808 348 888 268 4: 803 143 16 545 591 4: 774 673 321 806 794 4: 899 633 827 921 200 4: 52 158 374 961 984 4: 202 788 388 49 595 4: 975 866 536 51 273 4: 379 763 429 500 361 4: 151 985 357 776 923 4: 609 259 445 756 168 4: 314 132 824 31 448 4: 216 454 76 430 675 4: 776 315 183 415 971 4: 651 299 224 258 767 4: 250 285 121 986 636 4: 73 703 278 692 280 4: 925 713 511 535 766 4: 92 622 198 405 606 4: 152 826 511 51 336 4: 834 525 561 622 713 4: 802 451 452 851 618 4: 334 652 165 174 819 4: 468 231 496 102 334 4: 932 406 469 111 111 4: 694 71 814 578 554 4: 817 85 663 280 231 4: 405 133 741 931 265 4: 359 395 126 988 720 4: 492 897 401 193 479 4: 194 576 638 342 298 4: 212 616 707 686 452 4: 779 486 827 252 685 4: 620 114 726 112 712 4: 820 736 954 280 100 4: 734 150 761 70 973 4: 397 884 636 282 843 4: 495 523 382 804 990 4: 66 115 988 930 6 4: 134 585 820 454 580 4: 834 323 647 857 108 4: 579 620 404 194 75 4: 111 642 251 530 710 4: 178 133 163 818 641 4: 235 990 867 878 748 4: 503 787 37 78 335 4: 8 170 153 704 960 4: 753 345 620 591 34 4: 386 256 54 636 958 4: 131 562 531 870 869 4: 402 261 672 288 37 4: 539 234 460 67 640 4: 323 849 935 966 627 4: 713 90 395 438 479 4: 375 237 749 735 689 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 6: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:09:58] : LOG : Building guide tree. 6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:09:58] : LOG : Aligning 6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 7: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:09:58] : LOG : Building guide tree. 7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:09:58] : LOG : Aligning 7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 8: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: [2026-12-03 08:09:58] : LOG : Building guide tree. 8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: [2026-12-03 08:09:58] : LOG : Aligning 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 9: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: [2026-12-03 08:09:58] : LOG : Building guide tree. 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 10: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:09:58] : LOG : Building guide tree. 10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:09:58] : LOG : Aligning 10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 11: [2026-12-03 08:09:58] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 1/12 Test #2: alphabet_utest ................... Passed 0.07 sec 2/12 Test #3: edist_utest ...................... Passed 0.07 sec 3/12 Test #4: task_utest ....................... Passed 0.06 sec 4/12 Test #5: C++Lib ........................... Passed 0.06 sec 5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.05 sec 6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.05 sec 9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: [2026-12-03 08:09:58] : LOG : Aligning 7/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.03 sec 11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 11: [2026-12-03 08:09:58] : LOG : Building guide tree. 12: [2026-12-03 08:09:58] : LOG : DSSim - a simplistic sequence simulator. 12: [2026-12-03 08:09:58] : LOG : Protein alignments - 20 seq 8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.05 sec 9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.05 sec 11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00 11: [2026-12-03 08:09:58] : LOG : Aligning 11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.05u 00:00:00.05 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2026-12-03 08:09:58] : LOG : Testing correctness of AVX bpm. 10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.13 sec 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2026-12-03 08:10:03] : LOG : Timing DYN 256 1: [2026-12-03 08:10:05] : LOG : 1.528353 - dyn 1: [2026-12-03 08:10:05] : LOG : 0.000000 - bpm 1: [2026-12-03 08:10:05] : LOG : 0.137065 - bpm_block2 1: [2026-12-03 08:10:05] : LOG : 0.135711 - bpm_block 11/12 Test #1: bpm_utest ........................ Passed 7.48 sec 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:10:29] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:10:49] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2026-12-03 08:11:07] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:11:35] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:11:46] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 115.67 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 115.74 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' set -e ; for SIMD in avx2 avx sse4.1 ; do \ if lscpu | grep -q ${SIMD} ; then \ cd "obj-${SIMD}/" && \ ctest --verbose ; \ cd .. ; \ fi ; \ done UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-avx2 Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 1: Test timeout computed to be: 1500 1: LEN: 256 1: [2026-12-03 08:11:55] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2026-12-03 08:11:56] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2026-12-03 08:12:03] : LOG : Timing DYN 256 1: [2026-12-03 08:12:05] : LOG : 1.547194 - dyn 1: [2026-12-03 08:12:05] : LOG : 0.063014 - bpm 1: [2026-12-03 08:12:05] : LOG : 0.132192 - bpm_block2 1: [2026-12-03 08:12:05] : LOG : 0.138331 - bpm_block 1/12 Test #1: bpm_utest ........................ Passed 9.46 sec test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 2: Test timeout computed to be: 1500 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2/12 Test #2: alphabet_utest ................... Passed 0.01 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 3: Test timeout computed to be: 1500 3: [2026-12-03 08:12:05] : LOG : Check for correctness. 3: [2026-12-03 08:12:05] : LOG : Timing serial 3: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 3: [2026-12-03 08:12:05] : LOG : Timing AVX 3: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 3/12 Test #3: edist_utest ...................... Passed 0.03 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 4: Test timeout computed to be: 1500 4: 246 189 668 268 631 4: 525 285 29 108 652 4: 204 434 337 668 260 4: 358 701 687 479 489 4: 184 141 741 206 844 4: 149 553 318 177 719 4: 164 194 441 111 594 4: 887 918 838 219 580 4: 714 100 205 939 852 4: 728 459 281 70 208 4: 336 364 662 385 77 4: 147 371 391 262 943 4: 352 781 593 994 970 4: 200 750 228 715 666 4: 254 786 44 289 186 4: 808 234 576 822 910 4: 896 592 998 924 720 4: 91 899 259 96 493 4: 719 779 989 903 687 4: 459 302 690 138 175 4: 462 673 777 723 36 4: 590 140 952 643 238 4: 137 765 432 579 198 4: 878 418 50 79 132 4: 326 398 185 434 300 4: 720 137 546 502 316 4: 763 929 934 28 954 4: 651 518 839 35 830 4: 116 237 252 6 605 4: 994 192 644 503 286 4: 267 17 308 778 826 4: 151 685 405 591 690 4: 760 531 863 829 752 4: 798 109 336 868 622 4: 807 569 298 376 897 4: 171 587 493 607 844 4: 5 812 339 382 492 4: 718 317 420 871 661 4: 120 515 563 805 275 4: 874 40 584 472 732 4: 940 998 644 774 710 4: 757 36 358 503 913 4: 464 783 460 676 267 4: 44 364 635 910 836 4: 430 669 911 224 113 4: 577 529 31 103 276 4: 38 659 50 170 568 4: 238 391 546 742 198 4: 330 201 947 433 786 4: 981 242 421 962 617 4: 202 660 298 613 231 4: 632 693 423 964 556 4: 272 183 492 610 712 4: 2 588 399 27 709 4/12 Test #4: task_utest ....................... Passed 0.01 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 5/12 Test #5: C++Lib ........................... Passed 0.02 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 6: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:12:05] : LOG : Building guide tree. 6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:12:05] : LOG : Aligning 6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.04 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 7: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:12:05] : LOG : Building guide tree. 7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 7: [2026-12-03 08:12:05] : LOG : Aligning 7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.04 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 8: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:12:05] : LOG : Building guide tree. 8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:12:05] : LOG : Aligning 8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.02 sec test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 9: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:12:05] : LOG : Building guide tree. 9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:12:05] : LOG : Aligning 9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.02 sec test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 10: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:12:05] : LOG : Building guide tree. 10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:12:05] : LOG : Aligning 10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.02 sec test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 11: [2026-12-03 08:12:05] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 11: [2026-12-03 08:12:05] : LOG : Building guide tree. 11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: [2026-12-03 08:12:05] : LOG : Aligning 11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.11 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 12: [2026-12-03 08:12:05] : LOG : DSSim - a simplistic sequence simulator. 12: [2026-12-03 08:12:05] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:12:34] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:12:53] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2026-12-03 08:13:10] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:13:37] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:13:50] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 110.89 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 120.74 sec UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-avx Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 1: Test timeout computed to be: 1500 1: LEN: 256 1: [2026-12-03 08:13:56] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2026-12-03 08:13:56] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2026-12-03 08:14:02] : LOG : Timing DYN 256 1: [2026-12-03 08:14:04] : LOG : 1.626327 - dyn 1: [2026-12-03 08:14:04] : LOG : 0.000000 - bpm 1: [2026-12-03 08:14:04] : LOG : 0.148865 - bpm_block2 1: [2026-12-03 08:14:04] : LOG : 0.142560 - bpm_block 1/12 Test #1: bpm_utest ........................ Passed 8.02 sec test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 2: Test timeout computed to be: 1500 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2/12 Test #2: alphabet_utest ................... Passed 0.01 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 3: Test timeout computed to be: 1500 3: [2026-12-03 08:14:04] : LOG : Check for correctness. 3: [2026-12-03 08:14:04] : LOG : Timing serial 3: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 4: Test timeout computed to be: 1500 4: 158 485 276 966 927 4: 845 656 158 257 327 4: 33 593 46 773 389 4: 144 622 854 915 616 4: 748 142 820 435 247 4: 418 595 732 632 523 4: 37 128 249 630 816 4: 693 361 167 175 302 4: 18 185 497 360 155 4: 576 807 65 645 226 4: 549 629 421 45 750 4: 815 802 834 528 604 4: 727 786 549 112 893 4: 322 611 100 10 28 4: 922 756 243 853 200 4: 90 789 547 676 602 4: 12 168 801 318 874 4: 146 857 359 20 345 4: 110 692 173 875 758 4: 328 128 798 879 388 4: 56 979 842 818 199 4: 566 654 45 554 506 4: 972 120 736 576 890 4: 165 9 545 525 929 4: 845 100 134 823 600 4: 597 502 227 953 997 4: 193 792 78 960 756 4: 587 433 302 231 947 4: 966 739 803 905 865 4: 854 764 131 816 534 4: 202 797 86 461 966 4: 262 872 205 928 154 4: 78 427 804 831 651 4: 992 372 896 917 472 4: 300 736 985 517 258 4: 130 974 434 378 562 4: 116 494 378 655 624 4: 313 622 412 947 696 4: 297 170 237 405 629 4: 891 386 150 387 940 4: 258 635 497 362 237 4: 993 671 945 303 303 4: 481 267 954 859 619 4: 58 719 792 209 846 4: 126 559 469 879 482 4: 148 664 11 524 139 4: 306 134 760 954 310 4: 612 306 294 491 692 4: 241 313 264 560 658 4: 388 476 842 675 65 4: 232 674 375 337 998 4: 590 81 203 541 302 4: 549 643 406 747 647 4: 217 424 927 316 661 4/12 Test #4: task_utest ....................... Passed 0.01 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 5/12 Test #5: C++Lib ........................... Passed 0.02 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 6: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:14:04] : LOG : Building guide tree. 6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:14:04] : LOG : Aligning 6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.02 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 7: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 7: [2026-12-03 08:14:04] : LOG : Building guide tree. 7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 7: [2026-12-03 08:14:04] : LOG : Aligning 7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.03 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 8: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:14:04] : LOG : Building guide tree. 8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:14:04] : LOG : Aligning 8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.03 sec test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 9: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:14:04] : LOG : Building guide tree. 9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:14:04] : LOG : Aligning 9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.02 sec test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 10: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:14:04] : LOG : Building guide tree. 10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:14:04] : LOG : Aligning 10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.02 sec test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 11: [2026-12-03 08:14:04] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 11: [2026-12-03 08:14:04] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00 11: [2026-12-03 08:14:04] : LOG : Building guide tree. 11: [2026-12-03 08:14:04] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00 11: [2026-12-03 08:14:04] : LOG : Aligning 11: [2026-12-03 08:14:05] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:01.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.12 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 12: [2026-12-03 08:14:05] : LOG : DSSim - a simplistic sequence simulator. 12: [2026-12-03 08:14:05] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:14:36] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:14:56] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2026-12-03 08:15:14] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:15:39] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:15:51] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 113.13 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 121.46 sec UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-sse4.1 Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 1: Test timeout computed to be: 1500 1: LEN: 256 1: [2026-12-03 08:15:58] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2026-12-03 08:15:58] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2026-12-03 08:16:03] : LOG : Timing DYN 256 1: [2026-12-03 08:16:05] : LOG : 1.625271 - dyn 1: [2026-12-03 08:16:05] : LOG : 0.000000 - bpm 1: [2026-12-03 08:16:05] : LOG : 0.157583 - bpm_block2 1: [2026-12-03 08:16:05] : LOG : 0.156535 - bpm_block 1/12 Test #1: bpm_utest ........................ Passed 7.77 sec test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 2: Test timeout computed to be: 1500 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2/12 Test #2: alphabet_utest ................... Passed 0.00 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 3: Test timeout computed to be: 1500 3: [2026-12-03 08:16:05] : LOG : Check for correctness. 3: [2026-12-03 08:16:05] : LOG : Timing serial 3: [2026-12-03 08:16:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 4: Test timeout computed to be: 1500 4: 420 740 147 717 600 4: 623 47 251 230 911 4: 659 776 781 820 592 4: 388 649 25 522 373 4: 125 607 118 401 30 4: 947 922 535 643 611 4: 468 411 333 212 46 4: 923 744 337 441 650 4: 1 31 740 243 483 4: 302 640 580 486 7 4: 806 59 510 60 285 4: 758 552 248 629 372 4: 113 367 724 541 608 4: 411 955 147 209 304 4: 636 79 35 738 339 4: 494 409 637 396 385 4: 43 280 253 640 375 4: 419 707 624 60 540 4: 678 534 318 297 390 4: 606 566 21 421 763 4: 98 857 139 93 302 4: 654 6 541 443 525 4: 310 474 879 669 941 4: 626 88 203 456 604 4: 604 433 345 374 750 4: 88 690 87 822 587 4: 458 817 542 386 928 4: 472 891 762 957 340 4: 895 136 63 401 834 4: 757 878 293 20 949 4: 573 999 687 879 258 4: 906 115 655 945 816 4: 938 711 514 946 616 4: 443 28 986 283 302 4: 240 409 307 949 156 4: 899 93 900 536 17 4: 220 36 66 851 919 4: 13 306 794 499 977 4: 897 914 212 524 558 4: 30 662 304 825 150 4: 426 628 319 926 801 4: 566 389 25 227 57 4: 986 929 980 759 323 4: 332 992 793 873 891 4: 65 729 370 655 429 4: 534 772 319 832 132 4: 958 156 437 915 292 4: 209 923 49 626 434 4: 552 834 347 617 13 4: 850 258 171 933 508 4: 963 699 738 117 246 4: 749 554 80 57 944 4: 510 386 211 889 631 4: 944 939 715 173 664 4/12 Test #4: task_utest ....................... Passed 0.01 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 5/12 Test #5: C++Lib ........................... Passed 0.02 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 6: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:16:06] : LOG : Building guide tree. 6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:16:06] : LOG : Aligning 6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.02 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 7: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 7: [2026-12-03 08:16:06] : LOG : Building guide tree. 7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:16:06] : LOG : Aligning 7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.03 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 8: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: [2026-12-03 08:16:06] : LOG : Building guide tree. 8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: [2026-12-03 08:16:06] : LOG : Aligning 8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.04 sec test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 9: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: [2026-12-03 08:16:06] : LOG : Building guide tree. 9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: [2026-12-03 08:16:06] : LOG : Aligning 9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.03 sec test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 10: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 10: [2026-12-03 08:16:06] : LOG : Building guide tree. 10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 10: [2026-12-03 08:16:06] : LOG : Aligning 10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.04 sec test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 11: [2026-12-03 08:16:06] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: [2026-12-03 08:16:06] : LOG : Building guide tree. 11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: [2026-12-03 08:16:06] : LOG : Aligning 11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.05u 00:00:00.05 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.11 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 12: [2026-12-03 08:16:06] : LOG : DSSim - a simplistic sequence simulator. 12: [2026-12-03 08:16:06] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:16:35] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:16:58] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2026-12-03 08:17:21] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:17:49] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:18:05] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 128.54 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 136.69 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kalign/ cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/libkalign.a -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/include/kalign/kalign.h -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/include/kalign/kalign_export.h -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignTargets.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignTargets-none.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignConfig.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignConfigVersion.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin/kalign make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' rm -rf debian/kalign/usr/lib/x86_64-linux-gnu/ dh_install obj-x86_64-linux-gnu/src/kalignfmt usr/bin mkdir -p debian/kalign/usr/lib/kalign/bin cp obj-avx2/src/kalign debian/kalign/usr/lib/kalign/kalign-avx2 cp obj-avx/src/kalign debian/kalign/usr/lib/kalign/kalign-avx cp obj-sse4.1/src/kalign debian/kalign/usr/lib/kalign/kalign-sse4.1 cp obj-avx2/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-avx2 cp obj-avx/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-avx cp obj-sse4.1/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-sse4.1 mv debian/kalign/usr/bin/kalign debian/kalign/usr/lib/kalign/kalign-plain mv debian/kalign/usr/bin/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-plain dh_install -pkalign debian/bin/simd-dispatch /usr/lib/kalign/bin cd /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin && \ ln -s ../lib/kalign/bin/simd-dispatch kalign cd /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin && \ ln -s ../lib/kalign/bin/simd-dispatch kalignfmt make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_md5sums dh_builddeb dpkg-deb: building package 'kalign' in '../kalign_3.4.0-1_amd64.deb'. dpkg-deb: building package 'kalign-dbgsym' in '../kalign-dbgsym_3.4.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kalign_3.4.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kalign_3.4.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3840511 and its subdirectories I: Current time: Wed Dec 2 20:18:34 -12 2026 I: pbuilder-time-stamp: 1796285914 Thu Dec 3 08:18:34 UTC 2026 I: Signing ./b1/kalign_3.4.0-1_amd64.buildinfo as kalign_3.4.0-1_amd64.buildinfo.asc Thu Dec 3 08:18:34 UTC 2026 I: Signed ./b1/kalign_3.4.0-1_amd64.buildinfo as ./b1/kalign_3.4.0-1_amd64.buildinfo.asc Thu Dec 3 08:18:34 UTC 2026 - build #1 for kalign/forky/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Thu Dec 3 08:18:34 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-goi6bJ8f, removing. /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 01:55 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 01:44 b2 -rw-rw-r-- 1 jenkins jenkins 1962 Apr 2 2024 kalign_3.4.0-1.dsc -rw------- 1 jenkins jenkins 3052 Oct 31 01:44 rbuildlog.qd6bdSu /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b1: total 2712 -rw-r--r-- 1 jenkins jenkins 1007404 Oct 31 01:55 build.log -rw-r--r-- 1 jenkins jenkins 672984 Oct 31 01:55 kalign-dbgsym_3.4.0-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 12372 Oct 31 01:55 kalign_3.4.0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1962 Oct 31 01:55 kalign_3.4.0-1.dsc -rw-r--r-- 1 jenkins jenkins 5869 Oct 31 01:55 kalign_3.4.0-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6751 Oct 31 01:55 kalign_3.4.0-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1380 Oct 31 01:55 kalign_3.4.0-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 139760 Oct 31 01:55 kalign_3.4.0-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1495 Oct 31 01:55 kalign_3.4.0-1_source.changes -rw-r--r-- 1 jenkins jenkins 903277 Oct 31 01:55 kalign_3.4.0.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b2: total 0 Fri Oct 31 01:55:45 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 2 20:07:33 -12 2026 I: pbuilder-time-stamp: 1796285253 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kalign_3.4.0-1.dsc] I: copying [./kalign_3.4.0.orig.tar.gz] I: copying [./kalign_3.4.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kalign_3.4.0-1.dsc: no acceptable signature found dpkg-source: info: extracting kalign in kalign-3.4.0 dpkg-source: info: unpacking kalign_3.4.0.orig.tar.gz dpkg-source: info: unpacking kalign_3.4.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3840511/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='99011a476b254ca2b468cc788009e56a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3840511' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/pbuilderrc_iauw --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b1 --logfile b1/build.log kalign_3.4.0-1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3840511/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libsimde-dev, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 32.4 MB of archives. After unpacking 124 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 56 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Fetched 32.4 MB in 2s (17.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_4.1.1+really3.31.6-2_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../19-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-4+b1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../21-libnghttp3-9_1.12.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../22-libngtcp2-16_1.16.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.16.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../23-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../24-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../25-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../26-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../27-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../28-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../29-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../30-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../31-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../32-libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../33-libsasl2-2_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../34-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../35-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:amd64. Preparing to unpack .../36-libngtcp2-crypto-ossl0_1.16.0-1_amd64.deb ... Unpacking libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../37-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../38-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../39-libp11-kit0_0.25.9-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../40-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../41-libgnutls30t64_3.8.10-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.10-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../42-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../43-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../44-libcurl4t64_8.17.0~rc2-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.17.0~rc2-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../45-libjsoncpp26_1.9.6-4_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-4) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../46-librhash1_1.4.6-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../47-libuv1t64_1.51.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../48-cmake_4.1.1+really3.31.6-2_amd64.deb ... Unpacking cmake (4.1.1+really3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../49-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../50-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../51-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../52-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../53-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../54-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../55-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../56-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package gettext. Preparing to unpack .../57-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../58-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../59-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../60-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../61-libsimde-dev_0.8.2-3_all.deb ... Unpacking libsimde-dev (0.8.2-3) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-3) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libcurl4t64:amd64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes dpkg-buildpackage: info: source package kalign dpkg-buildpackage: info: source version 1:3.4.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_auto_configure -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=OFF -DENABLE_AVX=OFF -DENABLE_AVX2=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=OFF -DENABLE_AVX=OFF -DENABLE_AVX2=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (4.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu dh_auto_configure --builddirectory obj-sse4.1 -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=OFF -DENABLE_AVX2=OFF cd obj-sse4.1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=OFF -DENABLE_AVX2=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test HAVE_SSE -- Performing Test HAVE_SSE - Success -- SSE4.1 is enabled - target CPU must support it -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (6.9s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-sse4.1 dh_auto_configure --builddirectory obj-avx -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=OFF cd obj-avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test HAVE_SSE -- Performing Test HAVE_SSE - Success -- SSE4.1 is enabled - target CPU must support it -- Performing Test HAVE_AVX -- Performing Test HAVE_AVX - Success -- AVX is enabled - target CPU must support it -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (11.6s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-avx dh_auto_configure --builddirectory obj-avx2 -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=ON cd obj-avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test HAVE_SSE -- Performing Test HAVE_SSE - Success -- SSE4.1 is enabled - target CPU must support it -- Performing Test HAVE_AVX -- Performing Test HAVE_AVX - Success -- AVX is enabled - target CPU must support it -- Performing Test HAVE_AVX2 -- Performing Test HAVE_AVX2 - Success -- AVX2 is enabled - target CPU must support it -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (8.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-avx2 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 4%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o [ 5%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o [ 8%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o [ 8%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o [ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c [ 10%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o [ 16%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o [ 17%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o [ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 18%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 20%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c [ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 25%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 28%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o [ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 33%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 37%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o [ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c [ 44%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o [ 45%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c [ 66%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 67%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake [ 67%] Built target bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 68%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 [ 70%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 [ 70%] Built target tldevel [ 71%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 71%] Built target alphabet_utest [ 71%] Built target task_utest /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm [ 71%] Built target kalign_OBJ make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 72%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake [ 74%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 [ 74%] Built target edist_utest /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 74%] Built target kalign_static [ 74%] Built target kalign make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 75%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o [ 77%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c [ 78%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c [ 79%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c [ 81%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o [ 82%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o [ 83%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 85%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o [ 86%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 87%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c [ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp [ 90%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 91%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 91%] Built target kalign_cmp_test /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 [ 93%] Built target kalign_io_test [ 94%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 95%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 [ 97%] Linking C executable kalignfmt [ 97%] Built target kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 97%] Built target kalign-bin [ 97%] Built target largebench /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 97%] Built target kalignfmt [ 98%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 [100%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [100%] Built target dssim [100%] Built target kaligncpp make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build --builddirectory obj-sse4.1 cd obj-sse4.1 && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build [ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o [ 6%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 5%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o [ 8%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 9%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o [ 10%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o [ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o [ 16%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 17%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 18%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o [ 20%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o [ 22%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o [ 22%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c [ 28%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o [ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o [ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o [ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 37%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c [ 39%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 40%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c [ 41%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c [ 67%] Linking C static library libtldevel.a [ 67%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 67%] Built target alphabet_utest /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 68%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 [ 70%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 [ 70%] Built target tldevel /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm [ 70%] Built target kalign_OBJ make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" [ 70%] Built target edist_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm [ 72%] Linking C static library libkalign_static.a [ 72%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 [ 72%] Built target task_utest [ 74%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 74%] Built target kalign [ 74%] Built target kalign_static [ 74%] Built target bpm_utest make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 75%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build [ 77%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o [ 78%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 79%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c [ 81%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c [ 82%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c [ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o [ 86%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c [ 87%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 90%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 [ 91%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 94%] Linking C executable kalignfmt [ 95%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 95%] Built target kalign_lib_test [ 95%] Built target kalign_io_test [ 97%] Linking C executable largebench [ 97%] Built target kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 97%] Built target kalignfmt /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 97%] Built target kalign-bin [ 97%] Built target largebench [ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [100%] Built target dssim /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [100%] Built target kaligncpp make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' dh_auto_build --builddirectory obj-avx cd obj-avx && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 2%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o [ 4%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o [ 5%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o [ 6%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o [ 10%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o [ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 14%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o [ 16%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 13%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 17%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 18%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 20%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o [ 22%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o [ 24%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o [ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c [ 29%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 33%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o [ 35%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c [ 39%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o [ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 66%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 [ 67%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 67%] Built target edist_utest /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 67%] Built target task_utest [ 68%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 [ 70%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 [ 71%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 71%] Built target tldevel /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 71%] Built target alphabet_utest [ 71%] Built target bpm_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 71%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 72%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake [ 74%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 74%] Built target kalign make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend [ 74%] Built target kalign_static make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 75%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 78%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o [ 78%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp [ 79%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 81%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o [ 82%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c [ 83%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c [ 87%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o [ 87%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 89%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 90%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 [ 91%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 93%] Built target kalign_io_test [ 93%] Built target kalign_cmp_test [ 94%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 94%] Built target kalign_lib_test /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 95%] Linking C executable kalignfmt cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 [ 95%] Built target kalign-bin [ 97%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 97%] Built target kalignfmt /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 97%] Built target largebench [ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 98%] Built target dssim [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [100%] Built target kaligncpp make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' dh_auto_build --builddirectory obj-avx2 cd obj-avx2 && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx2/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 1%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o [ 2%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o [ 8%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 8%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 10%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o [ 10%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c [ 13%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o [ 13%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o [ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 14%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 16%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o [ 17%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 18%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o [ 20%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 21%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 22%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 25%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o [ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o [ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o [ 32%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c [ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c [ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 66%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 67%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 67%] Built target tldevel [ 67%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest [ 68%] Linking C static library libkalign_static.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake [ 70%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 [ 70%] Built target alphabet_utest /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 70%] Built target kalign_static make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend [ 70%] Built target kalign make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 71%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o [ 72%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o [ 74%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c [ 75%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c [ 77%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 79%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c [ 82%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o [ 82%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o [ 83%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o [ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c [ 86%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 87%] Linking C executable kalign_cmp_test [ 89%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 90%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 [ 90%] Built target bpm_utest [ 91%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 93%] Linking C executable kalignfmt cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 93%] Built target kalign_cmp_test [ 93%] Built target kalign_io_test [ 94%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 [ 95%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 95%] Built target kalign_lib_test [ 95%] Built target edist_utest [ 95%] Built target kalignfmt [ 97%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 97%] Built target task_utest [ 97%] Built target kalign-bin /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 97%] Built target largebench [ 98%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 [100%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [100%] Built target dssim /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [100%] Built target kaligncpp make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_test cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 1: Test timeout computed to be: 1500 test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 2: Test timeout computed to be: 1500 test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 3: Test timeout computed to be: 1500 test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 4: Test timeout computed to be: 1500 test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 1: LEN: 256 1: [2026-12-03 08:09:58] : LOG : Testing correctness of serial bpm. 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 3: [2026-12-03 08:09:58] : LOG : Check for correctness. 3: [2026-12-03 08:09:58] : LOG : Timing serial 3: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 4: 460 808 348 888 268 4: 803 143 16 545 591 4: 774 673 321 806 794 4: 899 633 827 921 200 4: 52 158 374 961 984 4: 202 788 388 49 595 4: 975 866 536 51 273 4: 379 763 429 500 361 4: 151 985 357 776 923 4: 609 259 445 756 168 4: 314 132 824 31 448 4: 216 454 76 430 675 4: 776 315 183 415 971 4: 651 299 224 258 767 4: 250 285 121 986 636 4: 73 703 278 692 280 4: 925 713 511 535 766 4: 92 622 198 405 606 4: 152 826 511 51 336 4: 834 525 561 622 713 4: 802 451 452 851 618 4: 334 652 165 174 819 4: 468 231 496 102 334 4: 932 406 469 111 111 4: 694 71 814 578 554 4: 817 85 663 280 231 4: 405 133 741 931 265 4: 359 395 126 988 720 4: 492 897 401 193 479 4: 194 576 638 342 298 4: 212 616 707 686 452 4: 779 486 827 252 685 4: 620 114 726 112 712 4: 820 736 954 280 100 4: 734 150 761 70 973 4: 397 884 636 282 843 4: 495 523 382 804 990 4: 66 115 988 930 6 4: 134 585 820 454 580 4: 834 323 647 857 108 4: 579 620 404 194 75 4: 111 642 251 530 710 4: 178 133 163 818 641 4: 235 990 867 878 748 4: 503 787 37 78 335 4: 8 170 153 704 960 4: 753 345 620 591 34 4: 386 256 54 636 958 4: 131 562 531 870 869 4: 402 261 672 288 37 4: 539 234 460 67 640 4: 323 849 935 966 627 4: 713 90 395 438 479 4: 375 237 749 735 689 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 6: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:09:58] : LOG : Building guide tree. 6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:09:58] : LOG : Aligning 6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 7: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:09:58] : LOG : Building guide tree. 7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:09:58] : LOG : Aligning 7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 8: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: [2026-12-03 08:09:58] : LOG : Building guide tree. 8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: [2026-12-03 08:09:58] : LOG : Aligning 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 9: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: [2026-12-03 08:09:58] : LOG : Building guide tree. 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 10: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:09:58] : LOG : Building guide tree. 10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:09:58] : LOG : Aligning 10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2026-12-03 08:09:58] : LOG : Detected protein sequences. 11: [2026-12-03 08:09:58] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances 1/12 Test #2: alphabet_utest ................... Passed 0.07 sec 2/12 Test #3: edist_utest ...................... Passed 0.07 sec 3/12 Test #4: task_utest ....................... Passed 0.06 sec 4/12 Test #5: C++Lib ........................... Passed 0.06 sec 5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.05 sec 6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.05 sec 9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: [2026-12-03 08:09:58] : LOG : Aligning 7/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.03 sec 11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 11: [2026-12-03 08:09:58] : LOG : Building guide tree. 12: [2026-12-03 08:09:58] : LOG : DSSim - a simplistic sequence simulator. 12: [2026-12-03 08:09:58] : LOG : Protein alignments - 20 seq 8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.05 sec 9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.05 sec 11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00 11: [2026-12-03 08:09:58] : LOG : Aligning 11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.05u 00:00:00.05 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2026-12-03 08:09:58] : LOG : Testing correctness of AVX bpm. 10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.13 sec 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2026-12-03 08:10:03] : LOG : Timing DYN 256 1: [2026-12-03 08:10:05] : LOG : 1.528353 - dyn 1: [2026-12-03 08:10:05] : LOG : 0.000000 - bpm 1: [2026-12-03 08:10:05] : LOG : 0.137065 - bpm_block2 1: [2026-12-03 08:10:05] : LOG : 0.135711 - bpm_block 11/12 Test #1: bpm_utest ........................ Passed 7.48 sec 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:10:29] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:10:49] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2026-12-03 08:11:07] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:11:35] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:11:46] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 115.67 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 115.74 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' set -e ; for SIMD in avx2 avx sse4.1 ; do \ if lscpu | grep -q ${SIMD} ; then \ cd "obj-${SIMD}/" && \ ctest --verbose ; \ cd .. ; \ fi ; \ done UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-avx2 Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 1: Test timeout computed to be: 1500 1: LEN: 256 1: [2026-12-03 08:11:55] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2026-12-03 08:11:56] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2026-12-03 08:12:03] : LOG : Timing DYN 256 1: [2026-12-03 08:12:05] : LOG : 1.547194 - dyn 1: [2026-12-03 08:12:05] : LOG : 0.063014 - bpm 1: [2026-12-03 08:12:05] : LOG : 0.132192 - bpm_block2 1: [2026-12-03 08:12:05] : LOG : 0.138331 - bpm_block 1/12 Test #1: bpm_utest ........................ Passed 9.46 sec test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 2: Test timeout computed to be: 1500 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2/12 Test #2: alphabet_utest ................... Passed 0.01 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 3: Test timeout computed to be: 1500 3: [2026-12-03 08:12:05] : LOG : Check for correctness. 3: [2026-12-03 08:12:05] : LOG : Timing serial 3: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 3: [2026-12-03 08:12:05] : LOG : Timing AVX 3: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 3/12 Test #3: edist_utest ...................... Passed 0.03 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 4: Test timeout computed to be: 1500 4: 246 189 668 268 631 4: 525 285 29 108 652 4: 204 434 337 668 260 4: 358 701 687 479 489 4: 184 141 741 206 844 4: 149 553 318 177 719 4: 164 194 441 111 594 4: 887 918 838 219 580 4: 714 100 205 939 852 4: 728 459 281 70 208 4: 336 364 662 385 77 4: 147 371 391 262 943 4: 352 781 593 994 970 4: 200 750 228 715 666 4: 254 786 44 289 186 4: 808 234 576 822 910 4: 896 592 998 924 720 4: 91 899 259 96 493 4: 719 779 989 903 687 4: 459 302 690 138 175 4: 462 673 777 723 36 4: 590 140 952 643 238 4: 137 765 432 579 198 4: 878 418 50 79 132 4: 326 398 185 434 300 4: 720 137 546 502 316 4: 763 929 934 28 954 4: 651 518 839 35 830 4: 116 237 252 6 605 4: 994 192 644 503 286 4: 267 17 308 778 826 4: 151 685 405 591 690 4: 760 531 863 829 752 4: 798 109 336 868 622 4: 807 569 298 376 897 4: 171 587 493 607 844 4: 5 812 339 382 492 4: 718 317 420 871 661 4: 120 515 563 805 275 4: 874 40 584 472 732 4: 940 998 644 774 710 4: 757 36 358 503 913 4: 464 783 460 676 267 4: 44 364 635 910 836 4: 430 669 911 224 113 4: 577 529 31 103 276 4: 38 659 50 170 568 4: 238 391 546 742 198 4: 330 201 947 433 786 4: 981 242 421 962 617 4: 202 660 298 613 231 4: 632 693 423 964 556 4: 272 183 492 610 712 4: 2 588 399 27 709 4/12 Test #4: task_utest ....................... Passed 0.01 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 5/12 Test #5: C++Lib ........................... Passed 0.02 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 6: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:12:05] : LOG : Building guide tree. 6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:12:05] : LOG : Aligning 6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.04 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 7: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:12:05] : LOG : Building guide tree. 7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 7: [2026-12-03 08:12:05] : LOG : Aligning 7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.04 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 8: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:12:05] : LOG : Building guide tree. 8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:12:05] : LOG : Aligning 8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.02 sec test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 9: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:12:05] : LOG : Building guide tree. 9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:12:05] : LOG : Aligning 9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.02 sec test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 10: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:12:05] : LOG : Building guide tree. 10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:12:05] : LOG : Aligning 10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.02 sec test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2026-12-03 08:12:05] : LOG : Detected protein sequences. 11: [2026-12-03 08:12:05] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances 11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 11: [2026-12-03 08:12:05] : LOG : Building guide tree. 11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: [2026-12-03 08:12:05] : LOG : Aligning 11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.11 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 12: [2026-12-03 08:12:05] : LOG : DSSim - a simplistic sequence simulator. 12: [2026-12-03 08:12:05] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:12:34] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:12:53] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2026-12-03 08:13:10] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:13:37] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:13:50] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 110.89 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 120.74 sec UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-avx Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 1: Test timeout computed to be: 1500 1: LEN: 256 1: [2026-12-03 08:13:56] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2026-12-03 08:13:56] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2026-12-03 08:14:02] : LOG : Timing DYN 256 1: [2026-12-03 08:14:04] : LOG : 1.626327 - dyn 1: [2026-12-03 08:14:04] : LOG : 0.000000 - bpm 1: [2026-12-03 08:14:04] : LOG : 0.148865 - bpm_block2 1: [2026-12-03 08:14:04] : LOG : 0.142560 - bpm_block 1/12 Test #1: bpm_utest ........................ Passed 8.02 sec test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 2: Test timeout computed to be: 1500 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2/12 Test #2: alphabet_utest ................... Passed 0.01 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 3: Test timeout computed to be: 1500 3: [2026-12-03 08:14:04] : LOG : Check for correctness. 3: [2026-12-03 08:14:04] : LOG : Timing serial 3: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 4: Test timeout computed to be: 1500 4: 158 485 276 966 927 4: 845 656 158 257 327 4: 33 593 46 773 389 4: 144 622 854 915 616 4: 748 142 820 435 247 4: 418 595 732 632 523 4: 37 128 249 630 816 4: 693 361 167 175 302 4: 18 185 497 360 155 4: 576 807 65 645 226 4: 549 629 421 45 750 4: 815 802 834 528 604 4: 727 786 549 112 893 4: 322 611 100 10 28 4: 922 756 243 853 200 4: 90 789 547 676 602 4: 12 168 801 318 874 4: 146 857 359 20 345 4: 110 692 173 875 758 4: 328 128 798 879 388 4: 56 979 842 818 199 4: 566 654 45 554 506 4: 972 120 736 576 890 4: 165 9 545 525 929 4: 845 100 134 823 600 4: 597 502 227 953 997 4: 193 792 78 960 756 4: 587 433 302 231 947 4: 966 739 803 905 865 4: 854 764 131 816 534 4: 202 797 86 461 966 4: 262 872 205 928 154 4: 78 427 804 831 651 4: 992 372 896 917 472 4: 300 736 985 517 258 4: 130 974 434 378 562 4: 116 494 378 655 624 4: 313 622 412 947 696 4: 297 170 237 405 629 4: 891 386 150 387 940 4: 258 635 497 362 237 4: 993 671 945 303 303 4: 481 267 954 859 619 4: 58 719 792 209 846 4: 126 559 469 879 482 4: 148 664 11 524 139 4: 306 134 760 954 310 4: 612 306 294 491 692 4: 241 313 264 560 658 4: 388 476 842 675 65 4: 232 674 375 337 998 4: 590 81 203 541 302 4: 549 643 406 747 647 4: 217 424 927 316 661 4/12 Test #4: task_utest ....................... Passed 0.01 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 5/12 Test #5: C++Lib ........................... Passed 0.02 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 6: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:14:04] : LOG : Building guide tree. 6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:14:04] : LOG : Aligning 6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.02 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 7: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 7: [2026-12-03 08:14:04] : LOG : Building guide tree. 7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 7: [2026-12-03 08:14:04] : LOG : Aligning 7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.03 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 8: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:14:04] : LOG : Building guide tree. 8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:14:04] : LOG : Aligning 8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.03 sec test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 9: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:14:04] : LOG : Building guide tree. 9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:14:04] : LOG : Aligning 9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.02 sec test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 10: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:14:04] : LOG : Building guide tree. 10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:14:04] : LOG : Aligning 10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.02 sec test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2026-12-03 08:14:04] : LOG : Detected protein sequences. 11: [2026-12-03 08:14:04] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances 11: [2026-12-03 08:14:04] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00 11: [2026-12-03 08:14:04] : LOG : Building guide tree. 11: [2026-12-03 08:14:04] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00 11: [2026-12-03 08:14:04] : LOG : Aligning 11: [2026-12-03 08:14:05] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:01.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.12 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 12: [2026-12-03 08:14:05] : LOG : DSSim - a simplistic sequence simulator. 12: [2026-12-03 08:14:05] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:14:36] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:14:56] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2026-12-03 08:15:14] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:15:39] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:15:51] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 113.13 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 121.46 sec UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-sse4.1 Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 1: Test timeout computed to be: 1500 1: LEN: 256 1: [2026-12-03 08:15:58] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2026-12-03 08:15:58] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2026-12-03 08:16:03] : LOG : Timing DYN 256 1: [2026-12-03 08:16:05] : LOG : 1.625271 - dyn 1: [2026-12-03 08:16:05] : LOG : 0.000000 - bpm 1: [2026-12-03 08:16:05] : LOG : 0.157583 - bpm_block2 1: [2026-12-03 08:16:05] : LOG : 0.156535 - bpm_block 1/12 Test #1: bpm_utest ........................ Passed 7.77 sec test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 2: Test timeout computed to be: 1500 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2/12 Test #2: alphabet_utest ................... Passed 0.00 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 3: Test timeout computed to be: 1500 3: [2026-12-03 08:16:05] : LOG : Check for correctness. 3: [2026-12-03 08:16:05] : LOG : Timing serial 3: [2026-12-03 08:16:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 4: Test timeout computed to be: 1500 4: 420 740 147 717 600 4: 623 47 251 230 911 4: 659 776 781 820 592 4: 388 649 25 522 373 4: 125 607 118 401 30 4: 947 922 535 643 611 4: 468 411 333 212 46 4: 923 744 337 441 650 4: 1 31 740 243 483 4: 302 640 580 486 7 4: 806 59 510 60 285 4: 758 552 248 629 372 4: 113 367 724 541 608 4: 411 955 147 209 304 4: 636 79 35 738 339 4: 494 409 637 396 385 4: 43 280 253 640 375 4: 419 707 624 60 540 4: 678 534 318 297 390 4: 606 566 21 421 763 4: 98 857 139 93 302 4: 654 6 541 443 525 4: 310 474 879 669 941 4: 626 88 203 456 604 4: 604 433 345 374 750 4: 88 690 87 822 587 4: 458 817 542 386 928 4: 472 891 762 957 340 4: 895 136 63 401 834 4: 757 878 293 20 949 4: 573 999 687 879 258 4: 906 115 655 945 816 4: 938 711 514 946 616 4: 443 28 986 283 302 4: 240 409 307 949 156 4: 899 93 900 536 17 4: 220 36 66 851 919 4: 13 306 794 499 977 4: 897 914 212 524 558 4: 30 662 304 825 150 4: 426 628 319 926 801 4: 566 389 25 227 57 4: 986 929 980 759 323 4: 332 992 793 873 891 4: 65 729 370 655 429 4: 534 772 319 832 132 4: 958 156 437 915 292 4: 209 923 49 626 434 4: 552 834 347 617 13 4: 850 258 171 933 508 4: 963 699 738 117 246 4: 749 554 80 57 944 4: 510 386 211 889 631 4: 944 939 715 173 664 4/12 Test #4: task_utest ....................... Passed 0.01 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 5/12 Test #5: C++Lib ........................... Passed 0.02 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 6: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:16:06] : LOG : Building guide tree. 6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2026-12-03 08:16:06] : LOG : Aligning 6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.02 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 7: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 7: [2026-12-03 08:16:06] : LOG : Building guide tree. 7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2026-12-03 08:16:06] : LOG : Aligning 7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.03 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 8: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: [2026-12-03 08:16:06] : LOG : Building guide tree. 8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: [2026-12-03 08:16:06] : LOG : Aligning 8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.04 sec test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 9: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: [2026-12-03 08:16:06] : LOG : Building guide tree. 9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: [2026-12-03 08:16:06] : LOG : Aligning 9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.03 sec test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 10: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 10: [2026-12-03 08:16:06] : LOG : Building guide tree. 10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 10: [2026-12-03 08:16:06] : LOG : Aligning 10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.04 sec test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2026-12-03 08:16:06] : LOG : Detected protein sequences. 11: [2026-12-03 08:16:06] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances 11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: [2026-12-03 08:16:06] : LOG : Building guide tree. 11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: [2026-12-03 08:16:06] : LOG : Aligning 11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.05u 00:00:00.05 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.11 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 12: [2026-12-03 08:16:06] : LOG : DSSim - a simplistic sequence simulator. 12: [2026-12-03 08:16:06] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:16:35] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:16:58] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2026-12-03 08:17:21] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2026-12-03 08:17:49] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2026-12-03 08:18:05] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 128.54 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 136.69 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kalign/ cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/libkalign.a -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/include/kalign/kalign.h -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/include/kalign/kalign_export.h -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignTargets.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignTargets-none.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignConfig.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignConfigVersion.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin/kalign make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' rm -rf debian/kalign/usr/lib/x86_64-linux-gnu/ dh_install obj-x86_64-linux-gnu/src/kalignfmt usr/bin mkdir -p debian/kalign/usr/lib/kalign/bin cp obj-avx2/src/kalign debian/kalign/usr/lib/kalign/kalign-avx2 cp obj-avx/src/kalign debian/kalign/usr/lib/kalign/kalign-avx cp obj-sse4.1/src/kalign debian/kalign/usr/lib/kalign/kalign-sse4.1 cp obj-avx2/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-avx2 cp obj-avx/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-avx cp obj-sse4.1/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-sse4.1 mv debian/kalign/usr/bin/kalign debian/kalign/usr/lib/kalign/kalign-plain mv debian/kalign/usr/bin/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-plain dh_install -pkalign debian/bin/simd-dispatch /usr/lib/kalign/bin cd /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin && \ ln -s ../lib/kalign/bin/simd-dispatch kalign cd /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin && \ ln -s ../lib/kalign/bin/simd-dispatch kalignfmt make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_md5sums dh_builddeb dpkg-deb: building package 'kalign' in '../kalign_3.4.0-1_amd64.deb'. dpkg-deb: building package 'kalign-dbgsym' in '../kalign-dbgsym_3.4.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kalign_3.4.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kalign_3.4.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3840511 and its subdirectories I: Current time: Wed Dec 2 20:18:34 -12 2026 I: pbuilder-time-stamp: 1796285914 Fri Oct 31 01:55:47 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Fri Oct 31 01:55:47 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Fri Oct 31 01:55:47 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 01:55:47 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ic1jG2' ==================================================================================== Fri Oct 31 01:55:47 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 kalign forky /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL 1:3.4.0-1" as arguments. Fri Oct 31 01:55:47 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-yHUKKOsa" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 01:55:47 UTC 2025 I: Downloading source for forky/kalign=1:3.4.0-1 Reading package lists... NOTICE: 'kalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kalign.git Please use: git clone https://salsa.debian.org/med-team/kalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 918 kB of source archives. Get:1 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (dsc) [1962 B] Get:2 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (tar) [903 kB] Get:3 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (diff) [12.4 kB] Fetched 918 kB in 0s (37.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'kalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kalign.git Please use: git clone https://salsa.debian.org/med-team/kalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 918 kB of source archives. Get:1 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (dsc) [1962 B] Get:2 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (tar) [903 kB] Get:3 http://deb.debian.org/debian forky/main kalign 1:3.4.0-1 (diff) [12.4 kB] Fetched 918 kB in 0s (37.5 MB/s) Download complete and in download only mode ============================================================================= Re-Building kalign in forky on amd64 on ionos11-amd64 now. Date: Fri Oct 31 01:55:47 UTC 2025 Date UTC: Fri Oct 31 01:55:47 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/pbuilderrc_00Wt + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' kalign = debian-installer -o kalign = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' kalign = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/pbuilderrc_00Wt --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b2 --logfile b2/build.log kalign_3.4.0-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 15:55:47 +14 2025 I: pbuilder-time-stamp: 1761875747 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kalign_3.4.0-1.dsc] I: copying [./kalign_3.4.0.orig.tar.gz] I: copying [./kalign_3.4.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kalign_3.4.0-1.dsc: no acceptable signature found dpkg-source: info: extracting kalign in kalign-3.4.0 dpkg-source: info: unpacking kalign_3.4.0.orig.tar.gz dpkg-source: info: unpacking kalign_3.4.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/690477/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 01:56 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/690477/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/690477/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=a02524a7acd14e4dbfac19edef962ff8 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=690477 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/pbuilderrc_00Wt --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b2 --logfile b2/build.log kalign_3.4.0-1.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/690477/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libsimde-dev, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 32.4 MB of archives. After unpacking 124 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 56 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Fetched 32.4 MB in 1s (43.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_4.1.1+really3.31.6-2_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../19-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-4+b1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../21-libnghttp3-9_1.12.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../22-libngtcp2-16_1.16.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.16.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../23-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../24-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../25-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../26-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../27-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../28-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../29-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../30-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../31-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../32-libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../33-libsasl2-2_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../34-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../35-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:amd64. Preparing to unpack .../36-libngtcp2-crypto-ossl0_1.16.0-1_amd64.deb ... Unpacking libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../37-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../38-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../39-libp11-kit0_0.25.9-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../40-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../41-libgnutls30t64_3.8.10-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.10-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../42-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../43-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../44-libcurl4t64_8.17.0~rc2-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.17.0~rc2-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../45-libjsoncpp26_1.9.6-4_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-4) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../46-librhash1_1.4.6-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../47-libuv1t64_1.51.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../48-cmake_4.1.1+really3.31.6-2_amd64.deb ... Unpacking cmake (4.1.1+really3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../49-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../50-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../51-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../52-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../53-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../54-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../55-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../56-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package gettext. Preparing to unpack .../57-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../58-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../59-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../60-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../61-libsimde-dev_0.8.2-3_all.deb ... Unpacking libsimde-dev (0.8.2-3) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-3) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libcurl4t64:amd64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/690477/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/690477/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes dpkg-buildpackage: info: source package kalign dpkg-buildpackage: info: source version 1:3.4.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_auto_configure -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=OFF -DENABLE_AVX=OFF -DENABLE_AVX2=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=OFF -DENABLE_AVX=OFF -DENABLE_AVX2=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (1.9s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu dh_auto_configure --builddirectory obj-sse4.1 -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=OFF -DENABLE_AVX2=OFF cd obj-sse4.1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=OFF -DENABLE_AVX2=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test HAVE_SSE -- Performing Test HAVE_SSE - Success -- SSE4.1 is enabled - target CPU must support it -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (1.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-sse4.1 dh_auto_configure --builddirectory obj-avx -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=OFF cd obj-avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test HAVE_SSE -- Performing Test HAVE_SSE - Success -- SSE4.1 is enabled - target CPU must support it -- Performing Test HAVE_AVX -- Performing Test HAVE_AVX - Success -- AVX is enabled - target CPU must support it -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (3.1s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-avx dh_auto_configure --builddirectory obj-avx2 -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=ON cd obj-avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP is enabled. -- Performing Test HAVE_SSE -- Performing Test HAVE_SSE - Success -- SSE4.1 is enabled - target CPU must support it -- Performing Test HAVE_AVX -- Performing Test HAVE_AVX - Success -- AVX is enabled - target CPU must support it -- Performing Test HAVE_AVX2 -- Performing Test HAVE_AVX2 - Success -- AVX2 is enabled - target CPU must support it -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- -- Configuration: -- -------------------------------------- -- Build type : None -- Compiler flags : -- Compiler c debug flags : -g -- Compiler c release flags : -O3 -DNDEBUG -- Compiler c min size flags : -Os -DNDEBUG -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp -- Configuring done (3.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED INSTALL_PREFIX -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-avx2 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o [ 6%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o [ 8%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o [ 6%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 8%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o [ 12%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o [ 13%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 14%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 16%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o [ 10%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 8%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 27%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o [ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o [ 29%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c [ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o [ 24%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o [ 24%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 33%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 36%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o [ 33%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o [ 41%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 45%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o [ 51%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 66%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake [ 67%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 [ 68%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 [ 70%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 70%] Built target tldevel [ 70%] Built target alphabet_utest /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 70%] Built target bpm_utest make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 70%] Built target edist_utest [ 70%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" [ 71%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 72%] Linking C static library libkalign_static.a [ 74%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 74%] Built target task_utest /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 74%] Built target kalign_static [ 74%] Built target kalign make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 77%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o [ 77%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o [ 79%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c [ 79%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c [ 89%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o [ 89%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o [ 89%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o [ 89%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o [ 89%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o [ 89%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 90%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 [ 91%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 [ 93%] Built target kalign_cmp_test [ 93%] Built target kalign_io_test /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 93%] Built target kalign_lib_test [ 95%] Linking C executable kalign [ 95%] Linking C executable kalignfmt cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 [ 97%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 97%] Built target kalignfmt [ 97%] Built target kalign-bin /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 97%] Built target largebench /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 [100%] Built target dssim /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [100%] Built target kaligncpp make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build --builddirectory obj-sse4.1 cd obj-sse4.1 && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 4%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o [ 9%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o [ 12%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o [ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o [ 25%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o [ 27%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 28%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o [ 9%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o [ 31%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o [ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 32%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o [ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o [ 32%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o [ 32%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o [ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o [ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c [ 20%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c [ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 32%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o [ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o [ 39%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 66%] Linking C executable task_utest [ 67%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 [ 68%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 [ 70%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest [ 71%] Linking C executable edist_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 71%] Built target alphabet_utest [ 71%] Built target edist_utest [ 71%] Built target task_utest [ 71%] Built target bpm_utest [ 71%] Built target kalign_OBJ /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" [ 71%] Built target tldevel make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 74%] Linking C static library libkalign.a [ 74%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 74%] Built target kalign /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" [ 74%] Built target kalign_static make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 75%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 78%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o [ 79%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o [ 81%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o [ 81%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o [ 82%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o [ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o [ 85%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 89%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o [ 89%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o [ 89%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 91%] Linking C executable kalign_io_test [ 91%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 94%] Linking C executable kalignfmt cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 [ 94%] Built target kalign_lib_test [ 94%] Built target kalign_io_test [ 94%] Built target kalign_cmp_test /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 94%] Built target kalignfmt [ 95%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 [ 97%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 98%] Built target largebench [ 98%] Built target kalign-bin /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 98%] Built target dssim [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [100%] Built target kaligncpp make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' dh_auto_build --builddirectory obj-avx cd obj-avx && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o [ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o [ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o [ 6%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o [ 8%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o [ 16%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o [ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o [ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o [ 25%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 27%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o [ 28%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 29%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o [ 31%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 8%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 33%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 33%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 33%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o [ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o [ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 33%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 35%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o [ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c [ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o [ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 66%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 [ 67%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 68%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake [ 70%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 [ 70%] Built target task_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a [ 70%] Built target edist_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm [ 71%] Linking C executable alphabet_utest [ 71%] Built target tldevel make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 [ 71%] Built target bpm_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest [ 71%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" [ 71%] Built target alphabet_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 72%] Linking C static library libkalign.a [ 74%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 74%] Built target kalign_static [ 74%] Built target kalign make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 78%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 78%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o [ 78%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o [ 79%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o [ 81%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o [ 82%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o [ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c [ 85%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c [ 87%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c [ 87%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 89%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 90%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 [ 91%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 91%] Built target kalign_io_test [ 91%] Built target kalign_cmp_test [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 [ 94%] Linking C executable kalignfmt cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 [ 95%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 95%] Built target kalign_lib_test /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 95%] Built target kalignfmt [ 97%] Linking C executable largebench /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 97%] Built target kalign-bin /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 97%] Built target largebench /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [100%] Built target dssim /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [100%] Built target kaligncpp make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' dh_auto_build --builddirectory obj-avx2 cd obj-avx2 && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx2/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o [ 9%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o [ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o [ 9%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o [ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o [ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o [ 17%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o [ 20%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o [ 20%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o [ 21%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o [ 22%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o [ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o [ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o [ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o [ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o [ 39%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o [ 12%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o [ 39%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o [ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o [ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o [ 12%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o [ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o [ 39%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 39%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o [ 39%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o [ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c [ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c [ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o [ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c [ 66%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 [ 67%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 [ 68%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 70%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 [ 70%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" [ 71%] Linking C executable alphabet_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 72%] Linking C static library libkalign.a [ 74%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 74%] Built target task_utest [ 74%] Built target edist_utest [ 74%] Built target tldevel [ 74%] Built target bpm_utest /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 74%] Built target alphabet_utest [ 74%] Built target kalign_static /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" [ 74%] Built target kalign make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 77%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o [ 77%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 78%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c [ 81%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o [ 82%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o [ 83%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o [ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o [ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o [ 86%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 87%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o [ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter_dna': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ [ 91%] Linking C executable kalign_cmp_test [ 91%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 [ 93%] Built target kalign_cmp_test [ 93%] Built target kalign_io_test [ 94%] Linking C executable kalignfmt [ 95%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 95%] Built target kalign_lib_test /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 97%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 97%] Built target kalignfmt [ 97%] Built target kalign-bin /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [ 97%] Built target largebench /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [100%] Built target dssim /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [100%] Built target kaligncpp make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_test cd obj-x86_64-linux-gnu && make -j40 test ARGS\+=--verbose ARGS\+=-j40 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j40 UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 1: Test timeout computed to be: 1500 test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 2: Test timeout computed to be: 1500 test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 3: Test timeout computed to be: 1500 test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib 4: Test timeout computed to be: 1500 test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 1: LEN: 256 1: [2025-10-31 01:57:27] : LOG : Testing correctness of serial bpm. 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 3: [2025-10-31 01:57:27] : LOG : Check for correctness. 3: [2025-10-31 01:57:27] : LOG : Timing serial 3: [2025-10-31 01:57:27] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 4: 782 229 620 348 373 4: 558 84 602 814 654 4: 639 134 407 586 19 4: 917 771 844 369 788 4: 851 14 113 649 455 4: 799 165 480 461 489 4: 257 974 955 515 725 4: 27 181 331 95 387 4: 380 380 919 998 786 4: 407 613 341 11 592 4: 944 72 224 760 764 4: 17 587 324 924 140 4: 327 247 189 177 772 4: 625 281 711 857 143 4: 96 654 84 633 108 4: 851 280 64 978 826 4: 479 384 560 396 857 4: 997 324 756 797 914 4: 668 541 815 501 19 4: 583 473 828 353 374 4: 497 292 72 688 790 4: 879 369 618 747 20 4: 28 235 426 792 773 4: 731 14 793 493 457 4: 252 962 61 59 146 4: 19 329 31 517 345 4: 300 179 181 38 863 4: 214 212 685 721 527 4: 992 260 123 311 497 4: 266 112 413 407 910 4: 155 600 195 850 218 4: 529 276 644 711 742 4: 916 188 16 768 240 4: 151 804 383 212 422 4: 940 342 575 904 896 4: 873 351 74 851 438 4: 60 108 32 800 354 4: 543 780 346 895 494 4: 998 762 485 143 273 4: 946 193 655 488 584 4: 702 961 324 608 230 4: 524 207 693 570 235 4: 150 403 928 571 90 4: 58 808 170 116 338 4: 743 577 369 113 94 4: 973 790 451 94 868 4: 487 297 56 829 954 4: 645 536 701 853 50 4: 265 80 763 896 796 4: 634 157 883 765 531 4: 93 249 204 131 28 4: 178 546 652 937 90 4: 433 987 400 934 480 4: 807 871 133 857 160 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2025-10-31 01:57:27] : LOG : Detected protein sequences. 6: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances 6: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:57:27] : LOG : Building guide tree. 6: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:57:27] : LOG : Aligning 6: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2025-10-31 01:57:27] : LOG : Detected protein sequences. 7: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances 7: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:57:27] : LOG : Building guide tree. 7: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:57:27] : LOG : Aligning 7: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2025-10-31 01:57:27] : LOG : Detected protein sequences. 8: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances 8: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:57:27] : LOG : Building guide tree. 8: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:57:27] : LOG : Aligning 8: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2025-10-31 01:57:27] : LOG : Detected protein sequences. 9: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances 9: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:57:27] : LOG : Building guide tree. 9: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:57:27] : LOG : Aligning 9: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2025-10-31 01:57:27] : LOG : Detected protein sequences. 10: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances 10: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:57:27] : LOG : Building guide tree. 10: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:57:27] : LOG : Aligning 10: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 1/12 Test #2: alphabet_utest ................... Passed 0.02 sec 2/12 Test #3: edist_utest ...................... Passed 0.01 sec 3/12 Test #4: task_utest ....................... Passed 0.01 sec 4/12 Test #5: C++Lib ........................... Passed 0.01 sec 5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.01 sec 6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.01 sec 7/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.01 sec 8/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.01 sec 9/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.01 sec 12: [2025-10-31 01:57:27] : LOG : DSSim - a simplistic sequence simulator. 12: [2025-10-31 01:57:27] : LOG : Protein alignments - 20 seq 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2025-10-31 01:57:27] : LOG : Detected protein sequences. 11: [2025-10-31 01:57:27] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances 11: [2025-10-31 01:57:27] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 11: [2025-10-31 01:57:27] : LOG : Building guide tree. 11: [2025-10-31 01:57:27] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: [2025-10-31 01:57:27] : LOG : Aligning 11: [2025-10-31 01:57:27] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.05 sec 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2025-10-31 01:57:27] : LOG : Testing correctness of AVX bpm. 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2025-10-31 01:57:30] : LOG : Protein alignments - 1000 seq 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2025-10-31 01:57:31] : LOG : Timing DYN 256 1: [2025-10-31 01:57:33] : LOG : 1.354982 - dyn 1: [2025-10-31 01:57:33] : LOG : 0.000000 - bpm 1: [2025-10-31 01:57:33] : LOG : 0.084595 - bpm_block2 1: [2025-10-31 01:57:33] : LOG : 0.084800 - bpm_block 11/12 Test #1: bpm_utest ........................ Passed 5.79 sec 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2025-10-31 01:57:41] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2025-10-31 01:57:51] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2025-10-31 01:57:54] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2025-10-31 01:57:59] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 36.67 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 36.69 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' set -e ; for SIMD in avx2 avx sse4.1 ; do \ if lscpu | grep -q ${SIMD} ; then \ cd "obj-${SIMD}/" && \ ctest --verbose ; \ cd .. ; \ fi ; \ done UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx2/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-avx2 Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 1: Test timeout computed to be: 1500 1: LEN: 256 1: [2025-10-31 01:58:04] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2025-10-31 01:58:04] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2025-10-31 01:58:09] : LOG : Timing DYN 256 1: [2025-10-31 01:58:10] : LOG : 1.364919 - dyn 1: [2025-10-31 01:58:10] : LOG : 0.055826 - bpm 1: [2025-10-31 01:58:10] : LOG : 0.081350 - bpm_block2 1: [2025-10-31 01:58:10] : LOG : 0.083861 - bpm_block 1/12 Test #1: bpm_utest ........................ Passed 6.00 sec test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 2: Test timeout computed to be: 1500 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2/12 Test #2: alphabet_utest ................... Passed 0.00 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 3: Test timeout computed to be: 1500 3: [2025-10-31 01:58:10] : LOG : Check for correctness. 3: [2025-10-31 01:58:10] : LOG : Timing serial 3: [2025-10-31 01:58:10] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 3: [2025-10-31 01:58:10] : LOG : Timing AVX 3: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 4: Test timeout computed to be: 1500 4: 192 105 833 767 666 4: 750 740 99 884 278 4: 87 687 172 967 347 4: 79 862 237 203 945 4: 29 341 900 496 78 4: 70 519 812 463 840 4: 529 998 796 762 325 4: 443 441 861 632 650 4: 191 905 879 57 22 4: 387 757 536 834 591 4: 941 891 681 88 547 4: 384 651 583 15 532 4: 45 513 845 777 451 4: 555 329 706 611 309 4: 35 639 253 306 51 4: 907 388 879 37 712 4: 415 845 338 791 422 4: 716 605 184 219 450 4: 218 292 363 458 581 4: 299 603 969 492 798 4: 593 314 260 166 14 4: 690 439 502 951 274 4: 614 382 254 606 398 4: 666 813 215 383 30 4: 859 795 26 767 252 4: 105 218 921 757 306 4: 561 117 150 829 139 4: 408 990 496 705 202 4: 6 87 489 167 670 4: 538 192 639 386 599 4: 982 812 417 32 413 4: 837 670 291 273 124 4: 969 496 986 550 757 4: 344 927 752 533 178 4: 501 100 715 741 166 4: 37 592 8 366 573 4: 338 701 176 632 1 4: 356 845 504 732 576 4: 132 125 925 927 411 4: 95 618 749 726 894 4: 723 6 460 85 533 4: 151 652 357 638 40 4: 412 88 721 947 754 4: 458 777 279 481 828 4: 989 589 722 15 829 4: 705 251 194 159 460 4: 820 488 297 132 644 4: 916 388 238 282 850 4: 583 925 173 235 116 4: 973 495 933 347 411 4: 2 756 992 46 162 4: 664 912 869 194 244 4: 579 872 77 359 997 4: 106 322 339 503 734 4/12 Test #4: task_utest ....................... Passed 0.00 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 5/12 Test #5: C++Lib ........................... Passed 0.00 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2025-10-31 01:58:10] : LOG : Detected protein sequences. 6: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances 6: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:58:10] : LOG : Building guide tree. 6: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:58:10] : LOG : Aligning 6: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.00 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2025-10-31 01:58:10] : LOG : Detected protein sequences. 7: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances 7: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:58:10] : LOG : Building guide tree. 7: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:58:10] : LOG : Aligning 7: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.00 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2025-10-31 01:58:10] : LOG : Detected protein sequences. 8: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances 8: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:58:10] : LOG : Building guide tree. 8: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:58:10] : LOG : Aligning 8: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.01 sec test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2025-10-31 01:58:10] : LOG : Detected protein sequences. 9: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances 9: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:58:10] : LOG : Building guide tree. 9: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:58:10] : LOG : Aligning 9: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.01 sec test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2025-10-31 01:58:10] : LOG : Detected protein sequences. 10: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances 10: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:58:10] : LOG : Building guide tree. 10: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:58:10] : LOG : Aligning 10: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.01 sec test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2025-10-31 01:58:10] : LOG : Detected protein sequences. 11: [2025-10-31 01:58:10] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances 11: [2025-10-31 01:58:10] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 11: [2025-10-31 01:58:10] : LOG : Building guide tree. 11: [2025-10-31 01:58:10] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00 11: [2025-10-31 01:58:10] : LOG : Aligning 11: [2025-10-31 01:58:10] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.05 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 12: [2025-10-31 01:58:10] : LOG : DSSim - a simplistic sequence simulator. 12: [2025-10-31 01:58:10] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2025-10-31 01:58:14] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2025-10-31 01:58:24] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2025-10-31 01:58:32] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2025-10-31 01:58:35] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2025-10-31 01:58:41] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 34.09 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 40.28 sec UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-avx Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 1: Test timeout computed to be: 1500 1: LEN: 256 1: [2025-10-31 01:58:45] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2025-10-31 01:58:45] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2025-10-31 01:58:49] : LOG : Timing DYN 256 1: [2025-10-31 01:58:50] : LOG : 1.354863 - dyn 1: [2025-10-31 01:58:50] : LOG : 0.000000 - bpm 1: [2025-10-31 01:58:50] : LOG : 0.084972 - bpm_block2 1: [2025-10-31 01:58:50] : LOG : 0.085044 - bpm_block 1/12 Test #1: bpm_utest ........................ Passed 5.77 sec test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 2: Test timeout computed to be: 1500 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2/12 Test #2: alphabet_utest ................... Passed 0.00 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 3: Test timeout computed to be: 1500 3: [2025-10-31 01:58:50] : LOG : Check for correctness. 3: [2025-10-31 01:58:50] : LOG : Timing serial 3: [2025-10-31 01:58:51] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:01.00 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 4: Test timeout computed to be: 1500 4: 806 83 54 236 164 4: 475 308 180 79 594 4: 627 31 268 455 507 4: 448 591 586 560 34 4: 264 260 413 911 173 4: 527 755 944 309 356 4: 53 646 550 322 810 4: 513 497 528 401 2 4: 486 837 319 240 30 4: 509 194 580 398 841 4: 435 587 660 622 973 4: 744 175 106 177 38 4: 124 203 844 182 11 4: 876 572 480 805 405 4: 114 105 112 325 301 4: 994 115 489 778 843 4: 307 407 5 940 722 4: 148 745 937 606 332 4: 572 950 837 577 222 4: 147 368 726 670 2 4: 524 453 781 728 296 4: 101 166 390 624 249 4: 796 778 753 100 54 4: 717 565 78 50 6 4: 928 376 114 741 59 4: 287 846 558 206 816 4: 306 912 525 644 254 4: 658 718 137 128 775 4: 655 635 640 765 856 4: 327 66 745 89 972 4: 312 277 852 142 156 4: 385 557 879 361 410 4: 201 336 464 374 418 4: 993 41 458 1 255 4: 614 727 675 479 636 4: 290 187 6 237 642 4: 853 173 30 852 226 4: 618 807 658 521 81 4: 789 142 225 355 501 4: 964 645 488 279 468 4: 814 136 184 605 530 4: 445 857 499 356 963 4: 153 145 965 145 776 4: 785 585 574 20 411 4: 380 966 546 678 101 4: 715 387 351 121 665 4: 871 326 862 949 149 4: 711 964 748 604 684 4: 638 492 55 353 744 4: 268 139 235 85 654 4: 753 491 676 640 761 4: 246 617 485 813 784 4: 98 272 119 596 862 4: 104 13 539 4 532 4/12 Test #4: task_utest ....................... Passed 0.00 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 5/12 Test #5: C++Lib ........................... Passed 0.00 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2025-10-31 01:58:51] : LOG : Detected protein sequences. 6: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances 6: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:58:51] : LOG : Building guide tree. 6: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:58:51] : LOG : Aligning 6: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.00 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2025-10-31 01:58:51] : LOG : Detected protein sequences. 7: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances 7: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:58:51] : LOG : Building guide tree. 7: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:58:51] : LOG : Aligning 7: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.00 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2025-10-31 01:58:51] : LOG : Detected protein sequences. 8: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances 8: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:58:51] : LOG : Building guide tree. 8: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:58:51] : LOG : Aligning 8: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.01 sec test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2025-10-31 01:58:51] : LOG : Detected protein sequences. 9: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances 9: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:58:51] : LOG : Building guide tree. 9: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:58:51] : LOG : Aligning 9: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.01 sec test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2025-10-31 01:58:51] : LOG : Detected protein sequences. 10: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances 10: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:58:51] : LOG : Building guide tree. 10: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:58:51] : LOG : Aligning 10: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.01 sec test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2025-10-31 01:58:51] : LOG : Detected protein sequences. 11: [2025-10-31 01:58:51] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances 11: [2025-10-31 01:58:51] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00 11: [2025-10-31 01:58:51] : LOG : Building guide tree. 11: [2025-10-31 01:58:51] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 11: [2025-10-31 01:58:51] : LOG : Aligning 11: [2025-10-31 01:58:51] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.06 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 12: [2025-10-31 01:58:51] : LOG : DSSim - a simplistic sequence simulator. 12: [2025-10-31 01:58:51] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2025-10-31 01:58:54] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2025-10-31 01:59:05] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2025-10-31 01:59:14] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2025-10-31 01:59:17] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2025-10-31 01:59:23] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 35.99 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 41.98 sec UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Test project /build/reproducible-path/kalign-3.4.0/obj-sse4.1 Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bpm_utest 1: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/bpm_utest 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 1: Test timeout computed to be: 1500 1: LEN: 256 1: [2025-10-31 01:59:27] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: [2025-10-31 01:59:27] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX 1: [2025-10-31 01:59:31] : LOG : Timing DYN 256 1: [2025-10-31 01:59:32] : LOG : 1.354548 - dyn 1: [2025-10-31 01:59:32] : LOG : 0.000000 - bpm 1: [2025-10-31 01:59:32] : LOG : 0.084859 - bpm_block2 1: [2025-10-31 01:59:32] : LOG : 0.084331 - bpm_block 1/12 Test #1: bpm_utest ........................ Passed 5.78 sec test 2 Start 2: alphabet_utest 2: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/alphabet_utest 2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 2: Test timeout computed to be: 1500 2: LEN: 21 2: @ -1 2: A 0 2: B 20 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 10 2: N 11 2: O -1 2: P 12 2: Q 13 2: R 14 2: S 15 2: T 16 2: U 20 2: V 17 2: W 18 2: X 20 2: Y 19 2: Z 20 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 13 2: @ -1 2: A 0 2: B 2 2: C 1 2: D 2 2: E 3 2: F 4 2: G 5 2: H 6 2: I 7 2: J -1 2: K 8 2: L 9 2: M 9 2: N 2 2: O -1 2: P 10 2: Q 3 2: R 8 2: S 0 2: T 0 2: U -1 2: V 7 2: W 11 2: X 12 2: Y 4 2: Z 3 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 5 2: @ -1 2: A 0 2: B 4 2: C 1 2: D 4 2: E -1 2: F -1 2: G 2 2: H 4 2: I -1 2: J -1 2: K 4 2: L -1 2: M 4 2: N 4 2: O -1 2: P -1 2: Q -1 2: R 4 2: S 4 2: T 3 2: U 3 2: V 4 2: W 4 2: X -1 2: Y 4 2: Z -1 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2: LEN: 6 2: @ -1 2: A 0 2: B 5 2: C 1 2: D 2 2: E 2 2: F 1 2: G 3 2: H 3 2: I 1 2: J -1 2: K 2 2: L 4 2: M 0 2: N 2 2: O -1 2: P 2 2: Q 2 2: R 2 2: S 3 2: T 3 2: U -1 2: V 1 2: W 4 2: X 5 2: Y 4 2: Z 5 2: [ -1 2: \ -1 2: ] -1 2: ^ -1 2: _ -1 2/12 Test #2: alphabet_utest ................... Passed 0.00 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 3: Test timeout computed to be: 1500 3: [2025-10-31 01:59:33] : LOG : Check for correctness. 3: [2025-10-31 01:59:33] : LOG : Timing serial 3: [2025-10-31 01:59:33] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 4: Test timeout computed to be: 1500 4: 757 563 457 705 460 4: 405 652 937 655 770 4: 307 797 423 667 583 4: 847 591 620 686 324 4: 97 359 239 537 541 4: 895 634 499 961 874 4: 245 715 875 260 242 4: 679 531 794 89 946 4: 709 6 179 91 108 4: 276 98 626 738 850 4: 3 571 53 720 7 4: 33 656 955 739 294 4: 324 109 710 120 915 4: 321 886 452 530 167 4: 974 754 846 47 790 4: 13 531 124 442 904 4: 873 558 773 342 598 4: 986 723 16 18 863 4: 50 929 79 256 280 4: 819 974 434 60 59 4: 312 138 755 183 398 4: 825 714 771 198 834 4: 944 538 914 360 113 4: 175 544 219 715 455 4: 48 441 412 270 560 4: 500 11 534 178 919 4: 481 947 246 643 910 4: 708 709 510 996 658 4: 94 919 737 210 425 4: 835 4 775 692 450 4: 770 724 565 681 571 4: 635 937 649 630 916 4: 774 176 263 434 907 4: 321 722 640 221 825 4: 159 543 233 893 631 4: 585 718 12 180 644 4: 516 526 351 271 711 4: 193 523 590 407 886 4: 856 591 867 566 494 4: 808 961 100 758 449 4: 871 730 331 525 855 4: 194 300 196 768 113 4: 543 762 157 835 799 4: 741 647 941 475 372 4: 547 889 533 568 45 4: 726 19 131 589 640 4: 735 46 414 451 969 4: 10 584 547 776 78 4: 420 449 750 511 950 4: 127 11 305 58 682 4: 484 486 609 345 85 4: 923 311 847 160 150 4: 696 370 645 591 733 4: 633 731 70 460 715 4/12 Test #4: task_utest ....................... Passed 0.00 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 5/12 Test #5: C++Lib ........................... Passed 0.00 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: 6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 6: 6: This program comes with ABSOLUTELY NO WARRANTY; for details type: 6: `kalign -showw'. 6: This is free software, and you are welcome to redistribute it 6: under certain conditions; consult the COPYING file for details. 6: 6: Please cite: 6: Lassmann, Timo. 6: "Kalign 3: multiple sequence alignment of large data sets." 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: 6: [2025-10-31 01:59:33] : LOG : Detected protein sequences. 6: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. 6: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances 6: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:59:33] : LOG : Building guide tree. 6: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: [2025-10-31 01:59:33] : LOG : Aligning 6: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- 6: >1j46_A 6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 6: >1k99_A 6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.00 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf 7: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" 7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 7: Test timeout computed to be: 1500 7: 7: Kalign (3.4.0) 7: 7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 7: 7: This program comes with ABSOLUTELY NO WARRANTY; for details type: 7: `kalign -showw'. 7: This is free software, and you are welcome to redistribute it 7: under certain conditions; consult the COPYING file for details. 7: 7: Please cite: 7: Lassmann, Timo. 7: "Kalign 3: multiple sequence alignment of large data sets." 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: 7: [2025-10-31 01:59:33] : LOG : Detected protein sequences. 7: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. 7: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances 7: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:59:33] : LOG : Building guide tree. 7: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: [2025-10-31 01:59:33] : LOG : Aligning 7: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- 7: >1j46_A 7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW 7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 7: >1k99_A 7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM 7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.00 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 8: 8: Kalign (3.4.0) 8: 8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 8: 8: This program comes with ABSOLUTELY NO WARRANTY; for details type: 8: `kalign -showw'. 8: This is free software, and you are welcome to redistribute it 8: under certain conditions; consult the COPYING file for details. 8: 8: Please cite: 8: Lassmann, Timo. 8: "Kalign 3: multiple sequence alignment of large data sets." 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: 8: [2025-10-31 01:59:33] : LOG : Detected protein sequences. 8: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. 8: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances 8: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:59:33] : LOG : Building guide tree. 8: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: [2025-10-31 01:59:33] : LOG : Aligning 8: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 8: KA--- 8: >1bbt_ac 8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 8: ----- 8: >1bev_ac 8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 8: TAILQ 8: >1mec_ac 8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.01 sec test 9 Start 9: kalign_itest_BB12006.tfa 9: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 9: Test timeout computed to be: 1500 9: 9: Kalign (3.4.0) 9: 9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 9: 9: This program comes with ABSOLUTELY NO WARRANTY; for details type: 9: `kalign -showw'. 9: This is free software, and you are welcome to redistribute it 9: under certain conditions; consult the COPYING file for details. 9: 9: Please cite: 9: Lassmann, Timo. 9: "Kalign 3: multiple sequence alignment of large data sets." 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: 9: [2025-10-31 01:59:33] : LOG : Detected protein sequences. 9: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 9: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances 9: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:59:33] : LOG : Building guide tree. 9: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: [2025-10-31 01:59:33] : LOG : Aligning 9: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 9: KA--- 9: >1bbt_ac 9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 9: ----- 9: >1bev_ac 9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 9: TAILQ 9: >1mec_ac 9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.01 sec test 10 Start 10: kalign_itest_BB30014.msf 10: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" 10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 10: Test timeout computed to be: 1500 10: 10: Kalign (3.4.0) 10: 10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 10: 10: This program comes with ABSOLUTELY NO WARRANTY; for details type: 10: `kalign -showw'. 10: This is free software, and you are welcome to redistribute it 10: under certain conditions; consult the COPYING file for details. 10: 10: Please cite: 10: Lassmann, Timo. 10: "Kalign 3: multiple sequence alignment of large data sets." 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: 10: [2025-10-31 01:59:33] : LOG : Detected protein sequences. 10: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. 10: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances 10: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:59:33] : LOG : Building guide tree. 10: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: [2025-10-31 01:59:33] : LOG : Aligning 10: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF 10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ 10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ 10: KA--- 10: >1bbt_ac 10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- 10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF 10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY 10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- 10: ----- 10: >1bev_ac 10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N 10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG 10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ 10: TAILQ 10: >1mec_ac 10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- 10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- 10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.01 sec test 11 Start 11: kalign_itest_BB30014.tfa 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 11: Test timeout computed to be: 1500 11: 11: Kalign (3.4.0) 11: 11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann 11: 11: This program comes with ABSOLUTELY NO WARRANTY; for details type: 11: `kalign -showw'. 11: This is free software, and you are welcome to redistribute it 11: under certain conditions; consult the COPYING file for details. 11: 11: Please cite: 11: Lassmann, Timo. 11: "Kalign 3: multiple sequence alignment of large data sets." 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: 11: [2025-10-31 01:59:33] : LOG : Detected protein sequences. 11: [2025-10-31 01:59:33] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. 11: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 11: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances 11: [2025-10-31 01:59:33] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 11: [2025-10-31 01:59:33] : LOG : Building guide tree. 11: [2025-10-31 01:59:33] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: [2025-10-31 01:59:33] : LOG : Aligning 11: [2025-10-31 01:59:33] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ------------- 11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE 11: ARKIFRF------- 11: >GTA1_BOVIN 11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG 11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP------------- 11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY-- 11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE 11: ARKVFKF------- 11: >GTA1_MOUSE 11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG 11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA-- 11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP------------- 11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY-- 11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE 11: ARKAFKIQ------ 11: >GTC1_RAT 11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG 11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP------------- 11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH-- 11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES 11: AVKIFS-------- 11: >GTC_RABIT 11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG 11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA-- 11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP------------- 11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN-- 11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE 11: AKIIFH-------- 11: >GTA1_RABIT 11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG 11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA-- 11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP------------- 11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN-- 11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK 11: AKKIFKIP------ 11: >GTA1_CAVPO 11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG 11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA-- 11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP------------- 11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM-- 11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE 11: MRKF---------- 11: >GTA3_RAT 11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG 11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA-- 11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA------------- 11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM-- 11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV 11: VRTVLKF------- 11: >GTA3_CHICK 11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG 11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS------------- 11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM-- 11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET 11: VRRVLRMYYDVKPH 11: >GTA2_CHICK 11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG 11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA-- 11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA------------- 11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM-- 11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN 11: VRKIFSF------- 11: >GTA1_CHICK 11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG 11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA-- 11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP------------- 11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA-- 11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR 11: LMAIFH-------- 11: >GTA1_ANTST 11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG 11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA-- 11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK------------- 11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM-- 11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED 11: IIKIFYF------- 11: >GTA4_HUMAN 11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG 11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA-- 11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK------------- 11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA-- 11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT 11: VYNIFRP------- 11: >1oe7_A 11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG 11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA-- 11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP------------- 11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH-- 11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA---------- 11: -------------- 11: >GTP1_BUFBU 11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG 11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA-- 11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN------------- 11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN-- 11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ 11: -------------- 11: >GT28_SCHJA 11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG 11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA-- 11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP------------- 11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH-- 11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------ 11: -------------- 11: >GTS1_ASCSU 11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG 11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG-- 11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE--- 11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS-- 11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY--------- 11: -------------- 11: >GTS9_CAEEL 11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG 11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS-- 11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS--- 11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD-- 11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR--------- 11: -------------- 11: >GTS3_CAEEL 11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG 11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA-- 11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES--- 11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT-- 11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF--------- 11: -------------- 11: >GTS5_CAEEL 11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG 11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA-- 11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG--- 11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD-- 11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF--------- 11: -------------- 11: >GTS6_CAEEL 11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG 11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA-- 11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK--- 11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD-- 11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF--------- 11: -------------- 11: >GTS4_CAEEL 11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN 11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA-- 11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD--- 11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS-- 11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV--------- 11: -------------- 11: >GTS2_CAEEL 11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD 11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA-- 11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP--- 11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST-- 11: -----LIN--IRLF-AE--K-EPHLNVFIRKL---------------------------- 11: -------------- 11: >GTS1_CAEEL 11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD 11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG-- 11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI--- 11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK-- 11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA--------- 11: -------------- 11: >GTS_ANOGA 11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN 11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA-- 11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV--- 11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY-- 11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV--------- 11: -------------- 11: >GTS2_MANSE 11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG 11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG-- 11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN--- 11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY-- 11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF--------- 11: -------------- 11: >GT1_ONCVO 11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN 11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG-- 11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK--- 11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT-- 11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF--------- 11: -------------- 11: >SC11_OMMSL 11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS 11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA-- 11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK------------- 11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN-- 11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF--------- 11: -------------- 11: >SC2_OCTDO 11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG 11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA-- 11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG--- 11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN-- 11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF--------- 11: -------------- 11: >1aw9_ 11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG 11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA-- 11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL--- 11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY-- 11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP-------- 11: -------------- 11: >GTH3_ARATH 11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG 11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA-- 11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM--- 11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY-- 11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV---------- 11: -------------- 11: >GTH7_ARATH 11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD 11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA-- 11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS--- 11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY-- 11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------ 11: -------------- 11: >GTH6_ARATH 11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD 11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA-- 11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF--- 11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY-- 11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------ 11: -------------- 11: >GTH_SILCU 11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH 11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT 11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF--- 11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY-- 11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA----------- 11: -------------- 11: >GTH1_ARATH 11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN 11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA-- 11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY--- 11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY-- 11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL----------------- 11: -------------- 11: >GTH4_ARATH 11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN 11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA-- 11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY--- 11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY-- 11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ----------------- 11: -------------- 11: >GTH4_MAIZE 11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG 11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL-- 11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL--- 11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC-- 11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE--- 11: -------------- 11: >GTH1_MAIZE 11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG 11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA-- 11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML--- 11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC-- 11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA---------- 11: -------------- 11: >GTH1_WHEAT 11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG 11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL-- 11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG 11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY-- 11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY---- 11: -------------- 11: >GTH5_ARATH 11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG 11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV-- 11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR--- 11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA-- 11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM--------- 11: -------------- 11: >1eem_A 11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG 11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD-- 11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ------------- 11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER-- 11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN 11: SPEACDYGL----- 11: >GTO1_MOUSE 11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG 11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD-- 11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK------------- 11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR-- 11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD 11: SPEACDYGL----- 11: >GTO2_HUMAN 11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD 11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD-- 11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL------------- 11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER-- 11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN 11: NPNAFDFGLC---- 11: >YKJ3_CAEEL 11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN 11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD-- 11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV------------- 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI 11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.05 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 12: [2025-10-31 01:59:33] : LOG : DSSim - a simplistic sequence simulator. 12: [2025-10-31 01:59:33] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2025-10-31 01:59:36] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2025-10-31 01:59:47] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12: [2025-10-31 02:00:26] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% 12: [2025-10-31 02:01:13] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% 12: [2025-10-31 02:01:18] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% 12/12 Test #12: DSSIM_takes_a_min ................ Passed 109.84 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 115.74 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kalign/ cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/libkalign.a -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/include/kalign/kalign.h -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/include/kalign/kalign_export.h -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignTargets.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignTargets-none.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignConfig.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignConfigVersion.cmake -- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin/kalign make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' rm -rf debian/kalign/usr/lib/x86_64-linux-gnu/ dh_install obj-x86_64-linux-gnu/src/kalignfmt usr/bin mkdir -p debian/kalign/usr/lib/kalign/bin cp obj-avx2/src/kalign debian/kalign/usr/lib/kalign/kalign-avx2 cp obj-avx/src/kalign debian/kalign/usr/lib/kalign/kalign-avx cp obj-sse4.1/src/kalign debian/kalign/usr/lib/kalign/kalign-sse4.1 cp obj-avx2/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-avx2 cp obj-avx/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-avx cp obj-sse4.1/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-sse4.1 mv debian/kalign/usr/bin/kalign debian/kalign/usr/lib/kalign/kalign-plain mv debian/kalign/usr/bin/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-plain dh_install -pkalign debian/bin/simd-dispatch /usr/lib/kalign/bin cd /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin && \ ln -s ../lib/kalign/bin/simd-dispatch kalign cd /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin && \ ln -s ../lib/kalign/bin/simd-dispatch kalignfmt make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_md5sums dh_builddeb dpkg-deb: building package 'kalign-dbgsym' in '../kalign-dbgsym_3.4.0-1_amd64.deb'. dpkg-deb: building package 'kalign' in '../kalign_3.4.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kalign_3.4.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kalign_3.4.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/690477/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/690477/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/690477 and its subdirectories I: Current time: Fri Oct 31 16:01:45 +14 2025 I: pbuilder-time-stamp: 1761876105 + false + set +x Fri Oct 31 02:01:45 UTC 2025 I: Signing ./b2/kalign_3.4.0-1_amd64.buildinfo as kalign_3.4.0-1_amd64.buildinfo.asc Fri Oct 31 02:01:45 UTC 2025 I: Signed ./b2/kalign_3.4.0-1_amd64.buildinfo as ./b2/kalign_3.4.0-1_amd64.buildinfo.asc Fri Oct 31 02:01:45 UTC 2025 - build #2 for kalign/forky/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 02:01:45 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-yHUKKOsa, removing. /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL: total 1004 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 01:55 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 02:01 b2 -rw-rw-r-- 1 jenkins jenkins 1962 Apr 2 2024 kalign_3.4.0-1.dsc -rw------- 1 jenkins jenkins 1010744 Oct 31 01:55 rbuildlog.qd6bdSu /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b1: total 2728 -rw-r--r-- 1 jenkins jenkins 1007404 Oct 31 01:55 build.log -rw-r--r-- 1 jenkins jenkins 672984 Oct 31 01:55 kalign-dbgsym_3.4.0-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 12372 Oct 31 01:55 kalign_3.4.0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1962 Oct 31 01:55 kalign_3.4.0-1.dsc -rw-r--r-- 1 jenkins jenkins 5869 Oct 31 01:55 kalign_3.4.0-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6751 Oct 31 01:55 kalign_3.4.0-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1380 Oct 31 01:55 kalign_3.4.0-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 139760 Oct 31 01:55 kalign_3.4.0-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1495 Oct 31 01:55 kalign_3.4.0-1_source.changes -rw-r--r-- 1 jenkins jenkins 903277 Oct 31 01:55 kalign_3.4.0.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b2: total 2716 -rw-rw-r-- 1 jenkins jenkins 1009284 Oct 31 02:01 build.log -rw-r--r-- 1 jenkins jenkins 672984 Oct 31 02:01 kalign-dbgsym_3.4.0-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 12372 Oct 31 02:01 kalign_3.4.0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1962 Oct 31 02:01 kalign_3.4.0-1.dsc -rw-rw-r-- 1 jenkins jenkins 5869 Oct 31 02:01 kalign_3.4.0-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6751 Oct 31 02:01 kalign_3.4.0-1_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1380 Oct 31 02:01 kalign_3.4.0-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 139760 Oct 31 02:01 kalign_3.4.0-1_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1495 Oct 31 02:01 kalign_3.4.0-1_source.changes -rw-r--r-- 1 jenkins jenkins 903277 Oct 31 02:01 kalign_3.4.0.orig.tar.gz Fri Oct 31 02:01:48 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Fri Oct 31 02:01:52 UTC 2025 I: kalign_3.4.0-1_amd64.changes: Format: 1.8 Date: Tue, 02 Apr 2024 13:49:50 +0200 Source: kalign Binary: kalign kalign-dbgsym Architecture: amd64 Version: 1:3.4.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: kalign - Global and progressive multiple sequence alignment Changes: kalign (1:3.4.0-1) unstable; urgency=medium . * Team upload. * New upstream version * d/patches: disable pass-proper-flags.patch for now. Checksums-Sha1: a808006b5cb4afadea0c05e3bac6e9dbee74ac23 672984 kalign-dbgsym_3.4.0-1_amd64.deb 090e653fe9b0630ee26c1e433b0f1f22d3478749 5869 kalign_3.4.0-1_amd64.buildinfo f451d0a97cbf18ab0b48a77507145aa2d8592827 139760 kalign_3.4.0-1_amd64.deb Checksums-Sha256: ec217723832794ef9a6dec89b636f1afb0f39bc0fefcc735fbdde5df6cac771f 672984 kalign-dbgsym_3.4.0-1_amd64.deb 0a5b0ccc7108a4e708bf7caf3b23d89667b49a845c09d954b454d524896a7214 5869 kalign_3.4.0-1_amd64.buildinfo 139ce8d521d4a49833fc86627b125124e6b2e7247609c59faddaf8e4a2236329 139760 kalign_3.4.0-1_amd64.deb Files: 585bd985641c207fa6388e00b633acec 672984 debug optional kalign-dbgsym_3.4.0-1_amd64.deb 08b9d3f9f36a7d3e11e9ccf26496a1c2 5869 science optional kalign_3.4.0-1_amd64.buildinfo dac00038081704650de5f4b0f189dbe0 139760 science optional kalign_3.4.0-1_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/kalign_3.4.0-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/kalign_3.4.0-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/kalign_3.4.0-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/kalign_3.4.0-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/kalign_3.4.0-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/kalign_3.4.0-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 01:55:44.971758536 +0000 +++ b2/build.log 2025-10-31 02:01:48.064217793 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 2 20:07:33 -12 2026 -I: pbuilder-time-stamp: 1796285253 +I: Current time: Fri Oct 31 15:55:47 +14 2025 +I: pbuilder-time-stamp: 1761875747 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -22,53 +22,85 @@ dpkg-source: info: unpacking kalign_3.4.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3840511/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/690477/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 01:56 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/690477/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/690477/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='99011a476b254ca2b468cc788009e56a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3840511' - PS1='# ' - PS2='> ' + INVOCATION_ID=a02524a7acd14e4dbfac19edef962ff8 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=690477 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/pbuilderrc_iauw --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b1 --logfile b1/build.log kalign_3.4.0-1.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/pbuilderrc_00Wt --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b2 --logfile b2/build.log kalign_3.4.0-1.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3840511/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/690477/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -170,7 +202,7 @@ Get: 60 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libsimde-dev all 0.8.2-3 [467 kB] -Fetched 32.4 MB in 2s (17.5 MB/s) +Fetched 32.4 MB in 1s (43.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -433,7 +465,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes +I: user script /srv/workspace/pbuilder/690477/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/690477/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes dpkg-buildpackage: info: source package kalign dpkg-buildpackage: info: source version 1:3.4.0-1 dpkg-buildpackage: info: source distribution unstable @@ -484,8 +520,8 @@ -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp --- Configuring done (4.0s) --- Generating done (0.2s) +-- Configuring done (1.9s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -534,8 +570,8 @@ -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp --- Configuring done (6.9s) --- Generating done (0.3s) +-- Configuring done (1.6s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -587,8 +623,8 @@ -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp --- Configuring done (11.6s) --- Generating done (0.2s) +-- Configuring done (3.1s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -643,8 +679,8 @@ -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp --- Configuring done (8.0s) --- Generating done (0.2s) +-- Configuring done (3.2s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -657,7 +693,7 @@ -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-avx2 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -665,125 +701,120 @@ make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend +make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build +make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build +make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -[ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 4%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -[ 5%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -[ 8%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -[ 8%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -[ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +[ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o +[ 6%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o +[ 8%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o +[ 6%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +[ 8%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o +[ 12%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o +[ 13%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o +[ 14%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o +[ 16%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +[ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o +[ 10%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o +[ 8%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +[ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c +[ 27%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o +[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o +[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o +[ 29%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c +[ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o +[ 24%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o +[ 24%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c -[ 10%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -[ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -[ 16%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -[ 17%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -[ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 18%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -[ 20%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +[ 33%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c -[ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -[ 25%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -[ 28%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -[ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 33%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -[ 37%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -[ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o +[ 36%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o +[ 33%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o +[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c -[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c +[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o +[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o +[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o +[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o +[ 41%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o +[ 45%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c +[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c -[ 44%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -[ 45%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o +[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o [ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o +[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o +[ 51%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c +[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c +[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c -[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c -[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c -[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c -/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); @@ -811,17 +842,14 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] - 58 | float d2; - | ^~ /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] 148 | char DNA_letters[12]= "acgtunACGTUN"; | ^~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ @@ -854,13 +882,6 @@ 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': -/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 94 | fscanf( f_ptr, "%d", &n_tasks); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ @@ -868,65 +889,80 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o +/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': +/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': +/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] + 58 | float d2; + | ^~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 94 | fscanf( f_ptr, "%d", &n_tasks); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o +[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c +[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c +[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c -[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c -[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o +[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o +[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c -[ 66%] Linking C executable bpm_utest -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 67%] Linking C static library libtldevel.a +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c +[ 66%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake -[ 67%] Built target bpm_utest +[ 67%] Linking C executable alphabet_utest +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 +[ 68%] Linking C executable bpm_utest +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 +[ 70%] Linking C executable edist_utest +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 68%] Linking C executable alphabet_utest -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 -[ 70%] Linking C executable task_utest -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 -[ 70%] Built target tldevel -[ 71%] Linking C executable edist_utest -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +[ 70%] Built target tldevel +[ 70%] Built target alphabet_utest +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 71%] Built target alphabet_utest -[ 71%] Built target task_utest /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm -[ 71%] Built target kalign_OBJ make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +[ 70%] Built target bpm_utest +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +[ 70%] Built target edist_utest +[ 70%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" +[ 71%] Linking C executable task_utest +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 72%] Linking C static library libkalign_static.a -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake [ 74%] Linking C static library libkalign.a +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 -[ 74%] Built target edist_utest +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +[ 74%] Built target task_utest /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' @@ -936,77 +972,75 @@ [ 74%] Built target kalign_static [ 74%] Built target kalign make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend +make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend -make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" +make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" +make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" -make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend +make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" -make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build +make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build +make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 75%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -[ 77%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c -[ 78%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +[ 77%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o +[ 77%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o +[ 79%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c -[ 79%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c -[ 81%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o -[ 82%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o -[ 83%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c -[ 85%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -[ 86%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -[ 87%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c +[ 79%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c +[ 89%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o +[ 89%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o +[ 89%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o +[ 89%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o +[ 89%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o +[ 89%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp -[ 90%] Linking C executable kalign_cmp_test -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; @@ -1015,30 +1049,35 @@ /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ -[ 91%] Linking C executable kalign_io_test +[ 90%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 91%] Built target kalign_cmp_test +[ 91%] Linking C executable kalign_cmp_test +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 +[ 93%] Built target kalign_cmp_test [ 93%] Built target kalign_io_test -[ 94%] Linking C executable kalign -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 95%] Linking C executable largebench -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 -[ 97%] Linking C executable kalignfmt -[ 97%] Built target kalign_lib_test +[ 93%] Built target kalign_lib_test +[ 95%] Linking C executable kalign +[ 95%] Linking C executable kalignfmt cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 +[ 97%] Linking C executable largebench +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +[ 97%] Built target kalignfmt +[ 97%] Built target kalign-bin /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 97%] Built target kalign-bin [ 97%] Built target largebench /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] @@ -1053,18 +1092,15 @@ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[ 97%] Built target kalignfmt -[ 98%] Linking CXX executable kaligncpp -cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 -[100%] Linking C executable dssim +[ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' +[100%] Linking CXX executable kaligncpp +cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 +[100%] Built target dssim /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' -[100%] Built target dssim [100%] Built target kaligncpp make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles 0 @@ -1072,7 +1108,7 @@ debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build --builddirectory obj-sse4.1 - cd obj-sse4.1 && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-sse4.1 && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-sse4.1//CMakeFiles/progress.marks @@ -1081,176 +1117,135 @@ make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build +make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build -[ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -[ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -[ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -[ 6%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 5%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -[ 8%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 9%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -[ 10%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -[ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -[ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -[ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -[ 16%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -[ 17%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +[ 4%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o +[ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o +[ 9%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o +[ 12%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o +[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o +[ 25%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o +[ 27%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -[ 18%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -[ 20%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -[ 22%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -[ 22%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -[ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +[ 28%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +[ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o +[ 9%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o +[ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o +[ 31%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o +[ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o +[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o +[ 32%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o +[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o +[ 32%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o +[ 32%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o +[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o +[ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o +[ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c +[ 20%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c -[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c -[ 28%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -[ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +[ 32%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o +[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o +[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o +[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o +[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o +[ 39%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o +[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o +[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -[ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c -[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -[ 37%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c -[ 39%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -[ 40%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c -[ 41%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c +[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c +[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o +[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c -[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c -[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c +[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o +[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o +[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c [ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o +[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c -[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c -/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': -/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] - 58 | float d2; - | ^~ -/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 94 | fscanf( f_ptr, "%d", &n_tasks); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': -/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] - 148 | char DNA_letters[12]= "acgtunACGTUN"; - | ^~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] - 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] - 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; - | ^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] - 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 94 | fscanf( f_ptr, "%d", &n_tasks); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; | ^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] - 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; - | ^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] - 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; - | ^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': +/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] + 58 | float d2; + | ^~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; @@ -1259,10 +1254,47 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] + 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; + | ^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_protein_BZX': +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:203:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (24 chars into 23 available) [-Wunterminated-string-initialization] + 203 | char aacode[23] = "ARNDCQEGHILKMFPSTWYVBZX"; + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_DNA': +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:231:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (17 chars into 16 available) [-Wunterminated-string-initialization] + 231 | char dnacode[16] = "ACGTUNRYSWKMBDHV"; + | ^~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein': +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] + 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; + | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 94 | fscanf( f_ptr, "%d", &n_tasks); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 94 | fscanf( f_ptr, "%d", &n_tasks); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': +/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] + 148 | char DNA_letters[12]= "acgtunACGTUN"; + | ^~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] + 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; @@ -1283,143 +1315,147 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c -[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o +[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c +[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c +[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o +[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o +[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c -[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c -[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c +[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o +[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o [ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c -[ 67%] Linking C static library libtldevel.a +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +[ 66%] Linking C executable task_utest [ 67%] Linking C executable alphabet_utest +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 +[ 68%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 +[ 70%] Linking C executable bpm_utest +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest +[ 71%] Linking C executable edist_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -[ 67%] Built target alphabet_utest -/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -/usr/bin/ranlib libtldevel.a +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -[ 68%] Linking C executable edist_utest -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 -[ 70%] Linking C executable task_utest -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 -[ 70%] Built target tldevel /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm -[ 70%] Built target kalign_OBJ make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +[ 71%] Built target alphabet_utest +[ 71%] Built target edist_utest +[ 71%] Built target task_utest +[ 71%] Built target bpm_utest +[ 71%] Built target kalign_OBJ +/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o +/usr/bin/ranlib libtldevel.a make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" -[ 70%] Built target edist_utest +[ 71%] Built target tldevel make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm -[ 72%] Linking C static library libkalign_static.a -[ 72%] Linking C static library libkalign.a +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +[ 74%] Linking C static library libkalign.a +[ 74%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 -[ 72%] Built target task_utest -[ 74%] Linking C executable bpm_utest -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -/usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -/usr/bin/ranlib libkalign_static.a /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 74%] Built target kalign -[ 74%] Built target kalign_static -[ 74%] Built target bpm_utest -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend +/usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o +/usr/bin/ranlib libkalign_static.a make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend +make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" +make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" -make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend -make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" +make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" -make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" +[ 74%] Built target kalign_static +make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build -make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" +make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 75%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o +[ 78%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o +[ 79%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o +[ 81%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o +[ 81%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o +[ 82%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o +[ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o +[ 85%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build -[ 77%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -[ 78%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -[ 79%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c -[ 81%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c -[ 82%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c -[ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c -[ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o -[ 86%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c -[ 87%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c -[ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o +make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c +make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +[ 89%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o +[ 89%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o +[ 89%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; @@ -1428,38 +1464,30 @@ /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ -[ 90%] Linking C executable kalign_cmp_test -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 [ 91%] Linking C executable kalign_io_test +[ 91%] Linking C executable kalign_cmp_test +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 [ 93%] Linking C executable kalign_lib_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [ 94%] Linking C executable kalignfmt -[ 95%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a +[ 94%] Built target kalign_lib_test +[ 94%] Built target kalign_io_test +[ 94%] Built target kalign_cmp_test +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -[ 95%] Built target kalign_lib_test -[ 95%] Built target kalign_io_test +[ 94%] Built target kalignfmt +[ 95%] Linking C executable kalign +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 [ 97%] Linking C executable largebench -[ 97%] Built target kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -[ 97%] Built target kalignfmt -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -[ 97%] Built target kalign-bin -[ 97%] Built target largebench -[ 98%] Linking C executable dssim -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", @@ -1473,11 +1501,19 @@ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[100%] Linking CXX executable kaligncpp -cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 +[ 98%] Linking C executable dssim +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' +[ 98%] Built target largebench +[ 98%] Built target kalign-bin /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' -[100%] Built target dssim +[ 98%] Built target dssim +[100%] Linking CXX executable kaligncpp +cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' [100%] Built target kaligncpp @@ -1485,7 +1521,7 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1' dh_auto_build --builddirectory obj-avx - cd obj-avx && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-avx && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx//CMakeFiles/progress.marks @@ -1493,114 +1529,121 @@ make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend -cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend -cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build +make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build -make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 2%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -[ 4%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -[ 5%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -[ 6%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -[ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -[ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -[ 10%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -[ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 14%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -[ 16%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c -[ 13%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +[ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o +[ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o +[ 6%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o +[ 6%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o +[ 8%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o +[ 16%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o +[ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o +[ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o +[ 25%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o +[ 27%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o +[ 28%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o +[ 29%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o +[ 31%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 17%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o +[ 8%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 18%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 20%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -[ 22%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -[ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -[ 24%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c +[ 33%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c -[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +[ 33%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o +[ 33%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o +[ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o +[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o +[ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c -[ 29%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +[ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o +[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o +[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c +[ 33%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +[ 35%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c +[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 33%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -[ 35%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c +[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o +[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c -[ 39%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -[ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c +[ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c [ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c +[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c -[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': +[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o +[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o +[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o +[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o +[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c -[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c +/build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ @@ -1616,25 +1659,28 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:272:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 272 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_reduced_protein2': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c -[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o +/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': +/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] + 148 | char DNA_letters[12]= "acgtunACGTUN"; + | ^~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] + 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 94 | fscanf( f_ptr, "%d", &n_tasks); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c -[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; @@ -1655,16 +1701,7 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 94 | fscanf( f_ptr, "%d", &n_tasks); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ @@ -1684,13 +1721,6 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': -/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] - 148 | char DNA_letters[12]= "acgtunACGTUN"; - | ^~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] - 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); @@ -1698,79 +1728,91 @@ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c +[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c +[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c -[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c +[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c +[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o [ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c +[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c -[ 66%] Linking C executable edist_utest -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 -[ 67%] Linking C executable task_utest +[ 66%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 67%] Built target edist_utest +[ 67%] Linking C executable edist_utest +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 67%] Built target task_utest [ 68%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 -[ 70%] Linking C executable alphabet_utest -cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 -[ 71%] Linking C executable bpm_utest +[ 70%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 +[ 70%] Built target task_utest +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o /usr/bin/ranlib libtldevel.a -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 71%] Built target tldevel -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest +[ 70%] Built target edist_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm +[ 71%] Linking C executable alphabet_utest +[ 71%] Built target tldevel make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 71%] Built target alphabet_utest +cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 [ 71%] Built target bpm_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest [ 71%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build +[ 71%] Built target alphabet_utest make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 72%] Linking C static library libkalign_static.a +[ 72%] Linking C static library libkalign.a +[ 74%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake -[ 74%] Linking C static library libkalign.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +[ 74%] Built target kalign_static [ 74%] Built target kalign make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend -[ 74%] Built target kalign_static +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" +make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend +make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' @@ -1778,61 +1820,55 @@ make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" -make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build -make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 75%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o +make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +[ 78%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o [ 78%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o [ 78%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp -[ 79%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c +[ 79%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o [ 81%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -[ 82%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c -[ 83%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -[ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o +[ 82%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o +[ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp +cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c +[ 85%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c -[ 87%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o -[ 87%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c +[ 87%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c +[ 87%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c -[ 89%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c +[ 89%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; @@ -1845,34 +1881,32 @@ cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 [ 91%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 -[ 93%] Linking C executable kalign_lib_test -cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 93%] Built target kalign_io_test -[ 93%] Built target kalign_cmp_test -[ 94%] Linking C executable kalign +[ 91%] Built target kalign_io_test +[ 91%] Built target kalign_cmp_test +[ 93%] Linking C executable kalign_lib_test +cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 +[ 94%] Linking C executable kalignfmt +cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 +[ 95%] Linking C executable kalign cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 94%] Built target kalign_lib_test -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a +[ 95%] Built target kalign_lib_test +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 95%] Linking C executable kalignfmt -cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 -[ 95%] Built target kalign-bin +[ 95%] Built target kalignfmt [ 97%] Linking C executable largebench +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 97%] Built target kalignfmt +[ 97%] Built target kalign-bin /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [ 97%] Built target largebench -[ 98%] Linking C executable dssim -cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", @@ -1886,11 +1920,13 @@ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' -[ 98%] Built target dssim +[ 98%] Linking C executable dssim +cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' +[100%] Built target dssim /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' [100%] Built target kaligncpp @@ -1898,7 +1934,7 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx' dh_auto_build --builddirectory obj-avx2 - cd obj-avx2 && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-avx2 && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx2/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx2//CMakeFiles/progress.marks @@ -1909,105 +1945,117 @@ make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend -make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" +make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build +make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 1%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -[ 2%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -[ 8%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -[ 8%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -[ 10%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -[ 10%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c -[ 13%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -[ 13%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -[ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -[ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +[ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o +[ 9%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o +[ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o +[ 9%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o +[ 9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o +[ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o +[ 17%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o +[ 20%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o +[ 20%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o +[ 21%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o +[ 22%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o +[ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o +[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o +[ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o +[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 14%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c -[ 16%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -[ 17%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o +[ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 18%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -[ 20%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o +[ 39%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o +[ 12%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o +[ 39%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o +[ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o +[ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o +[ 12%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o +[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o +[ 39%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 21%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -[ 22%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -[ 25%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -[ 32%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +[ 39%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c -[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +[ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o +[ 39%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o +[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o +[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o +[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c -[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o +[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c -[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c -[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -[ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o +[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c -[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o +[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o +[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o +[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o +[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; @@ -2028,22 +2076,6 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c -/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 94 | fscanf( f_ptr, "%d", &n_tasks); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c -[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c: In function 'create_default_protein': /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:167:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 167 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; @@ -2064,24 +2096,6 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c -[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c -[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c -/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': -/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] - 148 | char DNA_letters[12]= "acgtunACGTUN"; - | ^~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] - 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c -[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); @@ -2109,126 +2123,161 @@ /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c:326:27: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 326 | char aacode[20] = "ACDEFGHIKLMNPQRSTVWY"; | ^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c: In function 'detect_alphabet': +/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:148:31: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (13 chars into 12 available) [-Wunterminated-string-initialization] + 148 | char DNA_letters[12]= "acgtunACGTUN"; + | ^~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c:149:36: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (41 chars into 40 available) [-Wunterminated-string-initialization] + 149 | char protein_letters[40] = "acdefghiklmnpqrstvwyACDEFGHIKLMNPQRSTVWY"; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 94 | fscanf( f_ptr, "%d", &n_tasks); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c +[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o +[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c +[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c [ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c +[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c +[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c +[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c -[ 66%] Linking C static library libtldevel.a +[ 66%] Linking C executable bpm_utest +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 +[ 67%] Linking C executable task_utest +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 +[ 68%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 -/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -/usr/bin/ranlib libtldevel.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 67%] Linking C executable alphabet_utest -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 67%] Built target tldevel -[ 67%] Built target kalign_OBJ +[ 70%] Linking C executable edist_utest +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 +[ 70%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build +[ 71%] Linking C executable alphabet_utest +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest -[ 68%] Linking C static library libkalign_static.a -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake -[ 70%] Linking C static library libkalign.a +[ 72%] Linking C static library libkalign.a +[ 74%] Linking C static library libkalign_static.a cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 -[ 70%] Built target alphabet_utest +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm +/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o +/usr/bin/ranlib libtldevel.a +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +[ 74%] Built target task_utest +[ 74%] Built target edist_utest +[ 74%] Built target tldevel +[ 74%] Built target bpm_utest +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign_static.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +[ 74%] Built target alphabet_utest +[ 74%] Built target kalign_static /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o /usr/bin/ranlib libkalign.a -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 70%] Built target kalign_static make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend -[ 70%] Built target kalign make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" +[ 74%] Built target kalign make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color=" make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +[ 77%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o +[ 77%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c +make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build -make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build -make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build +make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 71%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -[ 72%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o -[ 74%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c -[ 75%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +[ 78%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c -[ 77%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c -[ 79%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c -[ 82%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -[ 82%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o -[ 83%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o +[ 81%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o +[ 82%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o +[ 83%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o [ 83%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c [ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o +[ 86%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o +[ 87%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o +[ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c -[ 86%] Linking C executable bpm_utest -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp /build/reproducible-path/kalign-3.4.0/tests/dssim.c: In function 'emit_letter': /build/reproducible-path/kalign-3.4.0/tests/dssim.c:315:29: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (21 chars into 20 available) [-Wunterminated-string-initialization] 315 | char alphabet[20] = "ACDEFGHIKLMNPQRSTVWY"; @@ -2237,46 +2286,36 @@ /build/reproducible-path/kalign-3.4.0/tests/dssim.c:321:28: warning: initializer-string for array of 'char' truncates NUL terminator but destination lacks 'nonstring' attribute (5 chars into 4 available) [-Wunterminated-string-initialization] 321 | char alphabet[4] = "ACGT"; | ^~~~~~ -[ 87%] Linking C executable kalign_cmp_test -[ 89%] Linking C executable kalign_io_test -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 +[ 91%] Linking C executable kalign_cmp_test +[ 91%] Linking C executable kalign_io_test cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 90%] Linking C executable kalign_lib_test -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 -[ 90%] Built target bpm_utest -[ 91%] Linking C executable edist_utest -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 93%] Linking C executable kalignfmt -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +[ 93%] Linking C executable kalign_lib_test +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 [ 93%] Built target kalign_cmp_test [ 93%] Built target kalign_io_test -[ 94%] Linking C executable task_utest -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 +[ 94%] Linking C executable kalignfmt [ 95%] Linking C executable kalign +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +[ 95%] Built target kalign_lib_test /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 95%] Built target kalign_lib_test -[ 95%] Built target edist_utest -[ 95%] Built target kalignfmt [ 97%] Linking C executable largebench cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 97%] Built target task_utest +[ 97%] Built target kalignfmt [ 97%] Built target kalign-bin +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a +make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' +[ 97%] Built target largebench /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", @@ -2290,13 +2329,10 @@ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a -make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' -[ 97%] Built target largebench -[ 98%] Linking CXX executable kaligncpp -cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 -[100%] Linking C executable dssim +[ 98%] Linking C executable dssim cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 +[100%] Linking CXX executable kaligncpp +cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' [100%] Built target dssim @@ -2308,10 +2344,10 @@ make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2' make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_test - cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 + cd obj-x86_64-linux-gnu && make -j40 test ARGS\+=--verbose ARGS\+=-j40 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j42 +/usr/bin/ctest --force-new-ctest-process --verbose -j40 UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl @@ -2397,7 +2433,7 @@ 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 1: LEN: 256 -1: [2026-12-03 08:09:58] : LOG : Testing correctness of serial bpm. +1: [2025-10-31 01:57:27] : LOG : Testing correctness of serial bpm. 2: LEN: 21 2: @ -1 2: A 0 @@ -2530,63 +2566,63 @@ 2: ] -1 2: ^ -1 2: _ -1 -3: [2026-12-03 08:09:58] : LOG : Check for correctness. -3: [2026-12-03 08:09:58] : LOG : Timing serial -3: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -4: 460 808 348 888 268 -4: 803 143 16 545 591 -4: 774 673 321 806 794 -4: 899 633 827 921 200 -4: 52 158 374 961 984 -4: 202 788 388 49 595 -4: 975 866 536 51 273 -4: 379 763 429 500 361 -4: 151 985 357 776 923 -4: 609 259 445 756 168 -4: 314 132 824 31 448 -4: 216 454 76 430 675 -4: 776 315 183 415 971 -4: 651 299 224 258 767 -4: 250 285 121 986 636 -4: 73 703 278 692 280 -4: 925 713 511 535 766 -4: 92 622 198 405 606 -4: 152 826 511 51 336 -4: 834 525 561 622 713 -4: 802 451 452 851 618 -4: 334 652 165 174 819 -4: 468 231 496 102 334 -4: 932 406 469 111 111 -4: 694 71 814 578 554 -4: 817 85 663 280 231 -4: 405 133 741 931 265 -4: 359 395 126 988 720 -4: 492 897 401 193 479 -4: 194 576 638 342 298 -4: 212 616 707 686 452 -4: 779 486 827 252 685 -4: 620 114 726 112 712 -4: 820 736 954 280 100 -4: 734 150 761 70 973 -4: 397 884 636 282 843 -4: 495 523 382 804 990 -4: 66 115 988 930 6 -4: 134 585 820 454 580 -4: 834 323 647 857 108 -4: 579 620 404 194 75 -4: 111 642 251 530 710 -4: 178 133 163 818 641 -4: 235 990 867 878 748 -4: 503 787 37 78 335 -4: 8 170 153 704 960 -4: 753 345 620 591 34 -4: 386 256 54 636 958 -4: 131 562 531 870 869 -4: 402 261 672 288 37 -4: 539 234 460 67 640 -4: 323 849 935 966 627 -4: 713 90 395 438 479 -4: 375 237 749 735 689 +3: [2025-10-31 01:57:27] : LOG : Check for correctness. +3: [2025-10-31 01:57:27] : LOG : Timing serial +3: [2025-10-31 01:57:27] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +4: 782 229 620 348 373 +4: 558 84 602 814 654 +4: 639 134 407 586 19 +4: 917 771 844 369 788 +4: 851 14 113 649 455 +4: 799 165 480 461 489 +4: 257 974 955 515 725 +4: 27 181 331 95 387 +4: 380 380 919 998 786 +4: 407 613 341 11 592 +4: 944 72 224 760 764 +4: 17 587 324 924 140 +4: 327 247 189 177 772 +4: 625 281 711 857 143 +4: 96 654 84 633 108 +4: 851 280 64 978 826 +4: 479 384 560 396 857 +4: 997 324 756 797 914 +4: 668 541 815 501 19 +4: 583 473 828 353 374 +4: 497 292 72 688 790 +4: 879 369 618 747 20 +4: 28 235 426 792 773 +4: 731 14 793 493 457 +4: 252 962 61 59 146 +4: 19 329 31 517 345 +4: 300 179 181 38 863 +4: 214 212 685 721 527 +4: 992 260 123 311 497 +4: 266 112 413 407 910 +4: 155 600 195 850 218 +4: 529 276 644 711 742 +4: 916 188 16 768 240 +4: 151 804 383 212 422 +4: 940 342 575 904 896 +4: 873 351 74 851 438 +4: 60 108 32 800 354 +4: 543 780 346 895 494 +4: 998 762 485 143 273 +4: 946 193 655 488 584 +4: 702 961 324 608 230 +4: 524 207 693 570 235 +4: 150 403 928 571 90 +4: 58 808 170 116 338 +4: 743 577 369 113 94 +4: 973 790 451 94 868 +4: 487 297 56 829 954 +4: 645 536 701 853 50 +4: 265 80 763 896 796 +4: 634 157 883 765 531 +4: 93 249 204 131 28 +4: 178 546 652 937 90 +4: 433 987 400 934 480 +4: 807 871 133 857 160 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK @@ -2608,15 +2644,15 @@ 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: -6: [2026-12-03 08:09:58] : LOG : Detected protein sequences. -6: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. -6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances -6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:09:58] : LOG : Building guide tree. -6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:09:58] : LOG : Aligning -6: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:57:27] : LOG : Detected protein sequences. +6: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. +6: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances +6: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:57:27] : LOG : Building guide tree. +6: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:57:27] : LOG : Aligning +6: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -2645,15 +2681,15 @@ 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: -7: [2026-12-03 08:09:58] : LOG : Detected protein sequences. -7: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. -7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances -7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2026-12-03 08:09:58] : LOG : Building guide tree. -7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2026-12-03 08:09:58] : LOG : Aligning -7: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:57:27] : LOG : Detected protein sequences. +7: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. +7: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances +7: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:57:27] : LOG : Building guide tree. +7: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:57:27] : LOG : Aligning +7: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -2682,14 +2718,39 @@ 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: -8: [2026-12-03 08:09:58] : LOG : Detected protein sequences. -8: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. -8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances -8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -8: [2026-12-03 08:09:58] : LOG : Building guide tree. -8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -8: [2026-12-03 08:09:58] : LOG : Aligning +8: [2025-10-31 01:57:27] : LOG : Detected protein sequences. +8: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. +8: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances +8: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:57:27] : LOG : Building guide tree. +8: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:57:27] : LOG : Aligning +8: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: >1al2_ad +8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS +8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF +8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ +8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ +8: KA--- +8: >1bbt_ac +8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- +8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF +8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY +8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- +8: ----- +8: >1bev_ac +8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N +8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC +8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG +8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ +8: TAILQ +8: >1mec_ac +8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- +8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF +8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM +8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP +8: Q---- 9: 9: Kalign (3.4.0) 9: @@ -2706,12 +2767,39 @@ 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: -9: [2026-12-03 08:09:58] : LOG : Detected protein sequences. -9: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances -9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -9: [2026-12-03 08:09:58] : LOG : Building guide tree. +9: [2025-10-31 01:57:27] : LOG : Detected protein sequences. +9: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +9: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances +9: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:57:27] : LOG : Building guide tree. +9: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:57:27] : LOG : Aligning +9: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: >1al2_ad +9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS +9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF +9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ +9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ +9: KA--- +9: >1bbt_ac +9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- +9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF +9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY +9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- +9: ----- +9: >1bev_ac +9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N +9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC +9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG +9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ +9: TAILQ +9: >1mec_ac +9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- +9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF +9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM +9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP +9: Q---- 10: 10: Kalign (3.4.0) 10: @@ -2728,15 +2816,15 @@ 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: -10: [2026-12-03 08:09:58] : LOG : Detected protein sequences. -10: [2026-12-03 08:09:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances -10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:09:58] : LOG : Building guide tree. -10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:09:58] : LOG : Aligning -10: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:57:27] : LOG : Detected protein sequences. +10: [2025-10-31 01:57:27] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +10: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances +10: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:57:27] : LOG : Building guide tree. +10: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:57:27] : LOG : Aligning +10: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -2761,6 +2849,17 @@ 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- + 1/12 Test #2: alphabet_utest ................... Passed 0.02 sec + 2/12 Test #3: edist_utest ...................... Passed 0.01 sec + 3/12 Test #4: task_utest ....................... Passed 0.01 sec + 4/12 Test #5: C++Lib ........................... Passed 0.01 sec + 5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.01 sec + 6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.01 sec + 7/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.01 sec + 8/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.01 sec + 9/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.01 sec +12: [2025-10-31 01:57:27] : LOG : DSSim - a simplistic sequence simulator. +12: [2025-10-31 01:57:27] : LOG : Protein alignments - 20 seq 11: 11: Kalign (3.4.0) 11: @@ -2777,78 +2876,15 @@ 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: -11: [2026-12-03 08:09:58] : LOG : Detected protein sequences. -11: [2026-12-03 08:09:58] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. -11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -11: [2026-12-03 08:09:58] : LOG : Calculating pairwise distances - 1/12 Test #2: alphabet_utest ................... Passed 0.07 sec - 2/12 Test #3: edist_utest ...................... Passed 0.07 sec - 3/12 Test #4: task_utest ....................... Passed 0.06 sec - 4/12 Test #5: C++Lib ........................... Passed 0.06 sec - 5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.05 sec - 6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.05 sec -9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -9: [2026-12-03 08:09:58] : LOG : Aligning - 7/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.03 sec -11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 -11: [2026-12-03 08:09:58] : LOG : Building guide tree. -12: [2026-12-03 08:09:58] : LOG : DSSim - a simplistic sequence simulator. -12: [2026-12-03 08:09:58] : LOG : Protein alignments - 20 seq -8: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -8: >1al2_ad -8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS -8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF -8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ -8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ -8: KA--- -8: >1bbt_ac -8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- -8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF -8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY -8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- -8: ----- -8: >1bev_ac -8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N -8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC -8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG -8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ -8: TAILQ -8: >1mec_ac -8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- -8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF -8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM -8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP -8: Q---- - 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.05 sec -9: [2026-12-03 08:09:58] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -9: >1al2_ad -9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS -9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF -9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ -9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ -9: KA--- -9: >1bbt_ac -9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- -9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF -9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY -9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- -9: ----- -9: >1bev_ac -9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N -9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC -9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG -9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ -9: TAILQ -9: >1mec_ac -9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- -9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF -9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM -9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP -9: Q---- - 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.05 sec -11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00 -11: [2026-12-03 08:09:58] : LOG : Aligning -11: [2026-12-03 08:09:58] : LOG : CPU Time: 0.05u 00:00:00.05 Elapsed: 00:00:00.00 +11: [2025-10-31 01:57:27] : LOG : Detected protein sequences. +11: [2025-10-31 01:57:27] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. +11: [2025-10-31 01:57:27] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +11: [2025-10-31 01:57:27] : LOG : Calculating pairwise distances +11: [2025-10-31 01:57:27] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +11: [2025-10-31 01:57:27] : LOG : Building guide tree. +11: [2025-10-31 01:57:27] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 +11: [2025-10-31 01:57:27] : LOG : Aligning +11: [2025-10-31 01:57:27] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- @@ -3157,41 +3193,41 @@ 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI +10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.05 sec 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: -1: [2026-12-03 08:09:58] : LOG : Testing correctness of AVX bpm. -10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.13 sec +1: [2025-10-31 01:57:27] : LOG : Testing correctness of AVX bpm. +12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% +12: [2025-10-31 01:57:30] : LOG : Protein alignments - 1000 seq 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX -1: [2026-12-03 08:10:03] : LOG : Timing DYN 256 -1: [2026-12-03 08:10:05] : LOG : 1.528353 - dyn -1: [2026-12-03 08:10:05] : LOG : 0.000000 - bpm -1: [2026-12-03 08:10:05] : LOG : 0.137065 - bpm_block2 -1: [2026-12-03 08:10:05] : LOG : 0.135711 - bpm_block -11/12 Test #1: bpm_utest ........................ Passed 7.48 sec -12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2026-12-03 08:10:29] : LOG : Protein alignments - 1000 seq +1: [2025-10-31 01:57:31] : LOG : Timing DYN 256 +1: [2025-10-31 01:57:33] : LOG : 1.354982 - dyn +1: [2025-10-31 01:57:33] : LOG : 0.000000 - bpm +1: [2025-10-31 01:57:33] : LOG : 0.084595 - bpm_block2 +1: [2025-10-31 01:57:33] : LOG : 0.084800 - bpm_block +11/12 Test #1: bpm_utest ........................ Passed 5.79 sec 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2026-12-03 08:10:49] : LOG : Protein alignments - 10000 seq +12: [2025-10-31 01:57:41] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12: [2026-12-03 08:11:07] : LOG : DNA alignments - 20 seq +12: [2025-10-31 01:57:51] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2026-12-03 08:11:35] : LOG : DNA alignments - 1000 seq +12: [2025-10-31 01:57:54] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2026-12-03 08:11:46] : LOG : DNA alignments - 10000 seq +12: [2025-10-31 01:57:59] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12/12 Test #12: DSSIM_takes_a_min ................ Passed 115.67 sec +12/12 Test #12: DSSIM_takes_a_min ................ Passed 36.67 sec 100% tests passed, 0 tests failed out of 12 -Total Test time (real) = 115.74 sec +Total Test time (real) = 36.69 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0' @@ -3220,25 +3256,25 @@ 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 1: Test timeout computed to be: 1500 1: LEN: 256 -1: [2026-12-03 08:11:55] : LOG : Testing correctness of serial bpm. +1: [2025-10-31 01:58:04] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: -1: [2026-12-03 08:11:56] : LOG : Testing correctness of AVX bpm. +1: [2025-10-31 01:58:04] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX -1: [2026-12-03 08:12:03] : LOG : Timing DYN 256 -1: [2026-12-03 08:12:05] : LOG : 1.547194 - dyn -1: [2026-12-03 08:12:05] : LOG : 0.063014 - bpm -1: [2026-12-03 08:12:05] : LOG : 0.132192 - bpm_block2 -1: [2026-12-03 08:12:05] : LOG : 0.138331 - bpm_block - 1/12 Test #1: bpm_utest ........................ Passed 9.46 sec +1: [2025-10-31 01:58:09] : LOG : Timing DYN 256 +1: [2025-10-31 01:58:10] : LOG : 1.364919 - dyn +1: [2025-10-31 01:58:10] : LOG : 0.055826 - bpm +1: [2025-10-31 01:58:10] : LOG : 0.081350 - bpm_block2 +1: [2025-10-31 01:58:10] : LOG : 0.083861 - bpm_block + 1/12 Test #1: bpm_utest ........................ Passed 6.00 sec test 2 Start 2: alphabet_utest @@ -3377,80 +3413,80 @@ 2: ] -1 2: ^ -1 2: _ -1 - 2/12 Test #2: alphabet_utest ................... Passed 0.01 sec + 2/12 Test #2: alphabet_utest ................... Passed 0.00 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 3: Test timeout computed to be: 1500 -3: [2026-12-03 08:12:05] : LOG : Check for correctness. -3: [2026-12-03 08:12:05] : LOG : Timing serial -3: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -3: [2026-12-03 08:12:05] : LOG : Timing AVX -3: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 - 3/12 Test #3: edist_utest ...................... Passed 0.03 sec +3: [2025-10-31 01:58:10] : LOG : Check for correctness. +3: [2025-10-31 01:58:10] : LOG : Timing serial +3: [2025-10-31 01:58:10] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +3: [2025-10-31 01:58:10] : LOG : Timing AVX +3: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 + 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx2/lib 4: Test timeout computed to be: 1500 -4: 246 189 668 268 631 -4: 525 285 29 108 652 -4: 204 434 337 668 260 -4: 358 701 687 479 489 -4: 184 141 741 206 844 -4: 149 553 318 177 719 -4: 164 194 441 111 594 -4: 887 918 838 219 580 -4: 714 100 205 939 852 -4: 728 459 281 70 208 -4: 336 364 662 385 77 -4: 147 371 391 262 943 -4: 352 781 593 994 970 -4: 200 750 228 715 666 -4: 254 786 44 289 186 -4: 808 234 576 822 910 -4: 896 592 998 924 720 -4: 91 899 259 96 493 -4: 719 779 989 903 687 -4: 459 302 690 138 175 -4: 462 673 777 723 36 -4: 590 140 952 643 238 -4: 137 765 432 579 198 -4: 878 418 50 79 132 -4: 326 398 185 434 300 -4: 720 137 546 502 316 -4: 763 929 934 28 954 -4: 651 518 839 35 830 -4: 116 237 252 6 605 -4: 994 192 644 503 286 -4: 267 17 308 778 826 -4: 151 685 405 591 690 -4: 760 531 863 829 752 -4: 798 109 336 868 622 -4: 807 569 298 376 897 -4: 171 587 493 607 844 -4: 5 812 339 382 492 -4: 718 317 420 871 661 -4: 120 515 563 805 275 -4: 874 40 584 472 732 -4: 940 998 644 774 710 -4: 757 36 358 503 913 -4: 464 783 460 676 267 -4: 44 364 635 910 836 -4: 430 669 911 224 113 -4: 577 529 31 103 276 -4: 38 659 50 170 568 -4: 238 391 546 742 198 -4: 330 201 947 433 786 -4: 981 242 421 962 617 -4: 202 660 298 613 231 -4: 632 693 423 964 556 -4: 272 183 492 610 712 -4: 2 588 399 27 709 - 4/12 Test #4: task_utest ....................... Passed 0.01 sec +4: 192 105 833 767 666 +4: 750 740 99 884 278 +4: 87 687 172 967 347 +4: 79 862 237 203 945 +4: 29 341 900 496 78 +4: 70 519 812 463 840 +4: 529 998 796 762 325 +4: 443 441 861 632 650 +4: 191 905 879 57 22 +4: 387 757 536 834 591 +4: 941 891 681 88 547 +4: 384 651 583 15 532 +4: 45 513 845 777 451 +4: 555 329 706 611 309 +4: 35 639 253 306 51 +4: 907 388 879 37 712 +4: 415 845 338 791 422 +4: 716 605 184 219 450 +4: 218 292 363 458 581 +4: 299 603 969 492 798 +4: 593 314 260 166 14 +4: 690 439 502 951 274 +4: 614 382 254 606 398 +4: 666 813 215 383 30 +4: 859 795 26 767 252 +4: 105 218 921 757 306 +4: 561 117 150 829 139 +4: 408 990 496 705 202 +4: 6 87 489 167 670 +4: 538 192 639 386 599 +4: 982 812 417 32 413 +4: 837 670 291 273 124 +4: 969 496 986 550 757 +4: 344 927 752 533 178 +4: 501 100 715 741 166 +4: 37 592 8 366 573 +4: 338 701 176 632 1 +4: 356 845 504 732 576 +4: 132 125 925 927 411 +4: 95 618 749 726 894 +4: 723 6 460 85 533 +4: 151 652 357 638 40 +4: 412 88 721 947 754 +4: 458 777 279 481 828 +4: 989 589 722 15 829 +4: 705 251 194 159 460 +4: 820 488 297 132 644 +4: 916 388 238 282 850 +4: 583 925 173 235 116 +4: 973 495 933 347 411 +4: 2 756 992 46 162 +4: 664 912 869 194 244 +4: 579 872 77 359 997 +4: 106 322 339 503 734 + 4/12 Test #4: task_utest ....................... Passed 0.00 sec test 5 Start 5: C++Lib @@ -3462,7 +3498,7 @@ 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 5/12 Test #5: C++Lib ........................... Passed 0.02 sec + 5/12 Test #5: C++Lib ........................... Passed 0.00 sec test 6 Start 6: kalign_itest_BB11001.tfa @@ -3485,15 +3521,15 @@ 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: -6: [2026-12-03 08:12:05] : LOG : Detected protein sequences. -6: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. -6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances -6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:12:05] : LOG : Building guide tree. -6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:12:05] : LOG : Aligning -6: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 +6: [2025-10-31 01:58:10] : LOG : Detected protein sequences. +6: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. +6: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances +6: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:58:10] : LOG : Building guide tree. +6: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:58:10] : LOG : Aligning +6: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -3506,7 +3542,7 @@ 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.04 sec + 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.00 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf @@ -3529,15 +3565,15 @@ 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: -7: [2026-12-03 08:12:05] : LOG : Detected protein sequences. -7: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. -7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances -7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2026-12-03 08:12:05] : LOG : Building guide tree. -7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 -7: [2026-12-03 08:12:05] : LOG : Aligning -7: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:58:10] : LOG : Detected protein sequences. +7: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. +7: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances +7: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:58:10] : LOG : Building guide tree. +7: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:58:10] : LOG : Aligning +7: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -3550,7 +3586,7 @@ 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.04 sec + 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.00 sec test 8 Start 8: kalign_itest_BB12006.msf @@ -3573,15 +3609,15 @@ 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: -8: [2026-12-03 08:12:05] : LOG : Detected protein sequences. -8: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. -8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances -8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2026-12-03 08:12:05] : LOG : Building guide tree. -8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2026-12-03 08:12:05] : LOG : Aligning -8: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 +8: [2025-10-31 01:58:10] : LOG : Detected protein sequences. +8: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. +8: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances +8: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:58:10] : LOG : Building guide tree. +8: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:58:10] : LOG : Aligning +8: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -3606,7 +3642,7 @@ 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- - 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.02 sec + 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.01 sec test 9 Start 9: kalign_itest_BB12006.tfa @@ -3629,15 +3665,15 @@ 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: -9: [2026-12-03 08:12:05] : LOG : Detected protein sequences. -9: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances -9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2026-12-03 08:12:05] : LOG : Building guide tree. -9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2026-12-03 08:12:05] : LOG : Aligning -9: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:58:10] : LOG : Detected protein sequences. +9: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +9: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances +9: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:58:10] : LOG : Building guide tree. +9: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:58:10] : LOG : Aligning +9: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -3662,7 +3698,7 @@ 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- - 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.02 sec + 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.01 sec test 10 Start 10: kalign_itest_BB30014.msf @@ -3685,15 +3721,15 @@ 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: -10: [2026-12-03 08:12:05] : LOG : Detected protein sequences. -10: [2026-12-03 08:12:05] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances -10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:12:05] : LOG : Building guide tree. -10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:12:05] : LOG : Aligning -10: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:58:10] : LOG : Detected protein sequences. +10: [2025-10-31 01:58:10] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +10: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances +10: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:58:10] : LOG : Building guide tree. +10: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:58:10] : LOG : Aligning +10: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -3718,7 +3754,7 @@ 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- -10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.02 sec +10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.01 sec test 11 Start 11: kalign_itest_BB30014.tfa @@ -3741,15 +3777,15 @@ 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: -11: [2026-12-03 08:12:05] : LOG : Detected protein sequences. -11: [2026-12-03 08:12:05] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. -11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -11: [2026-12-03 08:12:05] : LOG : Calculating pairwise distances -11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 -11: [2026-12-03 08:12:05] : LOG : Building guide tree. -11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 -11: [2026-12-03 08:12:05] : LOG : Aligning -11: [2026-12-03 08:12:05] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00 +11: [2025-10-31 01:58:10] : LOG : Detected protein sequences. +11: [2025-10-31 01:58:10] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. +11: [2025-10-31 01:58:10] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +11: [2025-10-31 01:58:10] : LOG : Calculating pairwise distances +11: [2025-10-31 01:58:10] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 +11: [2025-10-31 01:58:10] : LOG : Building guide tree. +11: [2025-10-31 01:58:10] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00 +11: [2025-10-31 01:58:10] : LOG : Aligning +11: [2025-10-31 01:58:10] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- @@ -4058,31 +4094,31 @@ 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI -11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.11 sec +11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.05 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 -12: [2026-12-03 08:12:05] : LOG : DSSim - a simplistic sequence simulator. -12: [2026-12-03 08:12:05] : LOG : Protein alignments - 20 seq +12: [2025-10-31 01:58:10] : LOG : DSSim - a simplistic sequence simulator. +12: [2025-10-31 01:58:10] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2026-12-03 08:12:34] : LOG : Protein alignments - 1000 seq +12: [2025-10-31 01:58:14] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2026-12-03 08:12:53] : LOG : Protein alignments - 10000 seq +12: [2025-10-31 01:58:24] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12: [2026-12-03 08:13:10] : LOG : DNA alignments - 20 seq +12: [2025-10-31 01:58:32] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2026-12-03 08:13:37] : LOG : DNA alignments - 1000 seq +12: [2025-10-31 01:58:35] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2026-12-03 08:13:50] : LOG : DNA alignments - 10000 seq +12: [2025-10-31 01:58:41] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12/12 Test #12: DSSIM_takes_a_min ................ Passed 110.89 sec +12/12 Test #12: DSSIM_takes_a_min ................ Passed 34.09 sec 100% tests passed, 0 tests failed out of 12 -Total Test time (real) = 120.74 sec +Total Test time (real) = 40.28 sec UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl @@ -4101,25 +4137,25 @@ 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 1: Test timeout computed to be: 1500 1: LEN: 256 -1: [2026-12-03 08:13:56] : LOG : Testing correctness of serial bpm. +1: [2025-10-31 01:58:45] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: -1: [2026-12-03 08:13:56] : LOG : Testing correctness of AVX bpm. +1: [2025-10-31 01:58:45] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX -1: [2026-12-03 08:14:02] : LOG : Timing DYN 256 -1: [2026-12-03 08:14:04] : LOG : 1.626327 - dyn -1: [2026-12-03 08:14:04] : LOG : 0.000000 - bpm -1: [2026-12-03 08:14:04] : LOG : 0.148865 - bpm_block2 -1: [2026-12-03 08:14:04] : LOG : 0.142560 - bpm_block - 1/12 Test #1: bpm_utest ........................ Passed 8.02 sec +1: [2025-10-31 01:58:49] : LOG : Timing DYN 256 +1: [2025-10-31 01:58:50] : LOG : 1.354863 - dyn +1: [2025-10-31 01:58:50] : LOG : 0.000000 - bpm +1: [2025-10-31 01:58:50] : LOG : 0.084972 - bpm_block2 +1: [2025-10-31 01:58:50] : LOG : 0.085044 - bpm_block + 1/12 Test #1: bpm_utest ........................ Passed 5.77 sec test 2 Start 2: alphabet_utest @@ -4258,16 +4294,16 @@ 2: ] -1 2: ^ -1 2: _ -1 - 2/12 Test #2: alphabet_utest ................... Passed 0.01 sec + 2/12 Test #2: alphabet_utest ................... Passed 0.00 sec test 3 Start 3: edist_utest 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 3: Test timeout computed to be: 1500 -3: [2026-12-03 08:14:04] : LOG : Check for correctness. -3: [2026-12-03 08:14:04] : LOG : Timing serial -3: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +3: [2025-10-31 01:58:50] : LOG : Check for correctness. +3: [2025-10-31 01:58:50] : LOG : Timing serial +3: [2025-10-31 01:58:51] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:01.00 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest @@ -4275,61 +4311,61 @@ 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib 4: Test timeout computed to be: 1500 -4: 158 485 276 966 927 -4: 845 656 158 257 327 -4: 33 593 46 773 389 -4: 144 622 854 915 616 -4: 748 142 820 435 247 -4: 418 595 732 632 523 -4: 37 128 249 630 816 -4: 693 361 167 175 302 -4: 18 185 497 360 155 -4: 576 807 65 645 226 -4: 549 629 421 45 750 -4: 815 802 834 528 604 -4: 727 786 549 112 893 -4: 322 611 100 10 28 -4: 922 756 243 853 200 -4: 90 789 547 676 602 -4: 12 168 801 318 874 -4: 146 857 359 20 345 -4: 110 692 173 875 758 -4: 328 128 798 879 388 -4: 56 979 842 818 199 -4: 566 654 45 554 506 -4: 972 120 736 576 890 -4: 165 9 545 525 929 -4: 845 100 134 823 600 -4: 597 502 227 953 997 -4: 193 792 78 960 756 -4: 587 433 302 231 947 -4: 966 739 803 905 865 -4: 854 764 131 816 534 -4: 202 797 86 461 966 -4: 262 872 205 928 154 -4: 78 427 804 831 651 -4: 992 372 896 917 472 -4: 300 736 985 517 258 -4: 130 974 434 378 562 -4: 116 494 378 655 624 -4: 313 622 412 947 696 -4: 297 170 237 405 629 -4: 891 386 150 387 940 -4: 258 635 497 362 237 -4: 993 671 945 303 303 -4: 481 267 954 859 619 -4: 58 719 792 209 846 -4: 126 559 469 879 482 -4: 148 664 11 524 139 -4: 306 134 760 954 310 -4: 612 306 294 491 692 -4: 241 313 264 560 658 -4: 388 476 842 675 65 -4: 232 674 375 337 998 -4: 590 81 203 541 302 -4: 549 643 406 747 647 -4: 217 424 927 316 661 - 4/12 Test #4: task_utest ....................... Passed 0.01 sec +4: 806 83 54 236 164 +4: 475 308 180 79 594 +4: 627 31 268 455 507 +4: 448 591 586 560 34 +4: 264 260 413 911 173 +4: 527 755 944 309 356 +4: 53 646 550 322 810 +4: 513 497 528 401 2 +4: 486 837 319 240 30 +4: 509 194 580 398 841 +4: 435 587 660 622 973 +4: 744 175 106 177 38 +4: 124 203 844 182 11 +4: 876 572 480 805 405 +4: 114 105 112 325 301 +4: 994 115 489 778 843 +4: 307 407 5 940 722 +4: 148 745 937 606 332 +4: 572 950 837 577 222 +4: 147 368 726 670 2 +4: 524 453 781 728 296 +4: 101 166 390 624 249 +4: 796 778 753 100 54 +4: 717 565 78 50 6 +4: 928 376 114 741 59 +4: 287 846 558 206 816 +4: 306 912 525 644 254 +4: 658 718 137 128 775 +4: 655 635 640 765 856 +4: 327 66 745 89 972 +4: 312 277 852 142 156 +4: 385 557 879 361 410 +4: 201 336 464 374 418 +4: 993 41 458 1 255 +4: 614 727 675 479 636 +4: 290 187 6 237 642 +4: 853 173 30 852 226 +4: 618 807 658 521 81 +4: 789 142 225 355 501 +4: 964 645 488 279 468 +4: 814 136 184 605 530 +4: 445 857 499 356 963 +4: 153 145 965 145 776 +4: 785 585 574 20 411 +4: 380 966 546 678 101 +4: 715 387 351 121 665 +4: 871 326 862 949 149 +4: 711 964 748 604 684 +4: 638 492 55 353 744 +4: 268 139 235 85 654 +4: 753 491 676 640 761 +4: 246 617 485 813 784 +4: 98 272 119 596 862 +4: 104 13 539 4 532 + 4/12 Test #4: task_utest ....................... Passed 0.00 sec test 5 Start 5: C++Lib @@ -4341,7 +4377,7 @@ 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 5/12 Test #5: C++Lib ........................... Passed 0.02 sec + 5/12 Test #5: C++Lib ........................... Passed 0.00 sec test 6 Start 6: kalign_itest_BB11001.tfa @@ -4364,15 +4400,15 @@ 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: -6: [2026-12-03 08:14:04] : LOG : Detected protein sequences. -6: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. -6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances -6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:14:04] : LOG : Building guide tree. -6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:14:04] : LOG : Aligning -6: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:58:51] : LOG : Detected protein sequences. +6: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. +6: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances +6: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:58:51] : LOG : Building guide tree. +6: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:58:51] : LOG : Aligning +6: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -4385,7 +4421,7 @@ 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.02 sec + 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.00 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf @@ -4408,15 +4444,15 @@ 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: -7: [2026-12-03 08:14:04] : LOG : Detected protein sequences. -7: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. -7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances -7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -7: [2026-12-03 08:14:04] : LOG : Building guide tree. -7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -7: [2026-12-03 08:14:04] : LOG : Aligning -7: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:58:51] : LOG : Detected protein sequences. +7: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. +7: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances +7: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:58:51] : LOG : Building guide tree. +7: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:58:51] : LOG : Aligning +7: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -4429,7 +4465,7 @@ 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.03 sec + 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.00 sec test 8 Start 8: kalign_itest_BB12006.msf @@ -4452,15 +4488,15 @@ 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: -8: [2026-12-03 08:14:04] : LOG : Detected protein sequences. -8: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. -8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances -8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2026-12-03 08:14:04] : LOG : Building guide tree. -8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2026-12-03 08:14:04] : LOG : Aligning -8: [2026-12-03 08:14:04] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 +8: [2025-10-31 01:58:51] : LOG : Detected protein sequences. +8: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. +8: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances +8: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:58:51] : LOG : Building guide tree. +8: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:58:51] : LOG : Aligning +8: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -4485,7 +4521,7 @@ 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- - 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.03 sec + 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.01 sec test 9 Start 9: kalign_itest_BB12006.tfa @@ -4508,15 +4544,15 @@ 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: -9: [2026-12-03 08:14:04] : LOG : Detected protein sequences. -9: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances -9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2026-12-03 08:14:04] : LOG : Building guide tree. -9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2026-12-03 08:14:04] : LOG : Aligning -9: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:58:51] : LOG : Detected protein sequences. +9: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +9: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances +9: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:58:51] : LOG : Building guide tree. +9: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:58:51] : LOG : Aligning +9: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -4541,7 +4577,7 @@ 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- - 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.02 sec + 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.01 sec test 10 Start 10: kalign_itest_BB30014.msf @@ -4564,15 +4600,15 @@ 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: -10: [2026-12-03 08:14:04] : LOG : Detected protein sequences. -10: [2026-12-03 08:14:04] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances -10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:14:04] : LOG : Building guide tree. -10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:14:04] : LOG : Aligning -10: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:58:51] : LOG : Detected protein sequences. +10: [2025-10-31 01:58:51] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +10: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances +10: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:58:51] : LOG : Building guide tree. +10: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:58:51] : LOG : Aligning +10: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -4597,7 +4633,7 @@ 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- -10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.02 sec +10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.01 sec test 11 Start 11: kalign_itest_BB30014.tfa @@ -4620,15 +4656,15 @@ 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: -11: [2026-12-03 08:14:04] : LOG : Detected protein sequences. -11: [2026-12-03 08:14:04] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. -11: [2026-12-03 08:14:04] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -11: [2026-12-03 08:14:04] : LOG : Calculating pairwise distances -11: [2026-12-03 08:14:04] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00 -11: [2026-12-03 08:14:04] : LOG : Building guide tree. -11: [2026-12-03 08:14:04] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00 -11: [2026-12-03 08:14:04] : LOG : Aligning -11: [2026-12-03 08:14:05] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:01.00 +11: [2025-10-31 01:58:51] : LOG : Detected protein sequences. +11: [2025-10-31 01:58:51] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. +11: [2025-10-31 01:58:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +11: [2025-10-31 01:58:51] : LOG : Calculating pairwise distances +11: [2025-10-31 01:58:51] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00 +11: [2025-10-31 01:58:51] : LOG : Building guide tree. +11: [2025-10-31 01:58:51] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 +11: [2025-10-31 01:58:51] : LOG : Aligning +11: [2025-10-31 01:58:51] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- @@ -4937,31 +4973,31 @@ 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI -11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.12 sec +11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.06 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 -12: [2026-12-03 08:14:05] : LOG : DSSim - a simplistic sequence simulator. -12: [2026-12-03 08:14:05] : LOG : Protein alignments - 20 seq +12: [2025-10-31 01:58:51] : LOG : DSSim - a simplistic sequence simulator. +12: [2025-10-31 01:58:51] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2026-12-03 08:14:36] : LOG : Protein alignments - 1000 seq +12: [2025-10-31 01:58:54] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2026-12-03 08:14:56] : LOG : Protein alignments - 10000 seq +12: [2025-10-31 01:59:05] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12: [2026-12-03 08:15:14] : LOG : DNA alignments - 20 seq +12: [2025-10-31 01:59:14] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2026-12-03 08:15:39] : LOG : DNA alignments - 1000 seq +12: [2025-10-31 01:59:17] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2026-12-03 08:15:51] : LOG : DNA alignments - 10000 seq +12: [2025-10-31 01:59:23] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12/12 Test #12: DSSIM_takes_a_min ................ Passed 113.13 sec +12/12 Test #12: DSSIM_takes_a_min ................ Passed 35.99 sec 100% tests passed, 0 tests failed out of 12 -Total Test time (real) = 121.46 sec +Total Test time (real) = 41.98 sec UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl @@ -4980,25 +5016,25 @@ 1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 1: Test timeout computed to be: 1500 1: LEN: 256 -1: [2026-12-03 08:15:58] : LOG : Testing correctness of serial bpm. +1: [2025-10-31 01:59:27] : LOG : Testing correctness of serial bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: -1: [2026-12-03 08:15:58] : LOG : Testing correctness of AVX bpm. +1: [2025-10-31 01:59:27] : LOG : Testing correctness of AVX bpm. 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX -1: [2026-12-03 08:16:03] : LOG : Timing DYN 256 -1: [2026-12-03 08:16:05] : LOG : 1.625271 - dyn -1: [2026-12-03 08:16:05] : LOG : 0.000000 - bpm -1: [2026-12-03 08:16:05] : LOG : 0.157583 - bpm_block2 -1: [2026-12-03 08:16:05] : LOG : 0.156535 - bpm_block - 1/12 Test #1: bpm_utest ........................ Passed 7.77 sec +1: [2025-10-31 01:59:31] : LOG : Timing DYN 256 +1: [2025-10-31 01:59:32] : LOG : 1.354548 - dyn +1: [2025-10-31 01:59:32] : LOG : 0.000000 - bpm +1: [2025-10-31 01:59:32] : LOG : 0.084859 - bpm_block2 +1: [2025-10-31 01:59:32] : LOG : 0.084331 - bpm_block + 1/12 Test #1: bpm_utest ........................ Passed 5.78 sec test 2 Start 2: alphabet_utest @@ -5144,9 +5180,9 @@ 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 3: Test timeout computed to be: 1500 -3: [2026-12-03 08:16:05] : LOG : Check for correctness. -3: [2026-12-03 08:16:05] : LOG : Timing serial -3: [2026-12-03 08:16:05] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +3: [2025-10-31 01:59:33] : LOG : Check for correctness. +3: [2025-10-31 01:59:33] : LOG : Timing serial +3: [2025-10-31 01:59:33] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 3/12 Test #3: edist_utest ...................... Passed 0.01 sec test 4 Start 4: task_utest @@ -5154,61 +5190,61 @@ 4: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/task_utest 4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib 4: Test timeout computed to be: 1500 -4: 420 740 147 717 600 -4: 623 47 251 230 911 -4: 659 776 781 820 592 -4: 388 649 25 522 373 -4: 125 607 118 401 30 -4: 947 922 535 643 611 -4: 468 411 333 212 46 -4: 923 744 337 441 650 -4: 1 31 740 243 483 -4: 302 640 580 486 7 -4: 806 59 510 60 285 -4: 758 552 248 629 372 -4: 113 367 724 541 608 -4: 411 955 147 209 304 -4: 636 79 35 738 339 -4: 494 409 637 396 385 -4: 43 280 253 640 375 -4: 419 707 624 60 540 -4: 678 534 318 297 390 -4: 606 566 21 421 763 -4: 98 857 139 93 302 -4: 654 6 541 443 525 -4: 310 474 879 669 941 -4: 626 88 203 456 604 -4: 604 433 345 374 750 -4: 88 690 87 822 587 -4: 458 817 542 386 928 -4: 472 891 762 957 340 -4: 895 136 63 401 834 -4: 757 878 293 20 949 -4: 573 999 687 879 258 -4: 906 115 655 945 816 -4: 938 711 514 946 616 -4: 443 28 986 283 302 -4: 240 409 307 949 156 -4: 899 93 900 536 17 -4: 220 36 66 851 919 -4: 13 306 794 499 977 -4: 897 914 212 524 558 -4: 30 662 304 825 150 -4: 426 628 319 926 801 -4: 566 389 25 227 57 -4: 986 929 980 759 323 -4: 332 992 793 873 891 -4: 65 729 370 655 429 -4: 534 772 319 832 132 -4: 958 156 437 915 292 -4: 209 923 49 626 434 -4: 552 834 347 617 13 -4: 850 258 171 933 508 -4: 963 699 738 117 246 -4: 749 554 80 57 944 -4: 510 386 211 889 631 -4: 944 939 715 173 664 - 4/12 Test #4: task_utest ....................... Passed 0.01 sec +4: 757 563 457 705 460 +4: 405 652 937 655 770 +4: 307 797 423 667 583 +4: 847 591 620 686 324 +4: 97 359 239 537 541 +4: 895 634 499 961 874 +4: 245 715 875 260 242 +4: 679 531 794 89 946 +4: 709 6 179 91 108 +4: 276 98 626 738 850 +4: 3 571 53 720 7 +4: 33 656 955 739 294 +4: 324 109 710 120 915 +4: 321 886 452 530 167 +4: 974 754 846 47 790 +4: 13 531 124 442 904 +4: 873 558 773 342 598 +4: 986 723 16 18 863 +4: 50 929 79 256 280 +4: 819 974 434 60 59 +4: 312 138 755 183 398 +4: 825 714 771 198 834 +4: 944 538 914 360 113 +4: 175 544 219 715 455 +4: 48 441 412 270 560 +4: 500 11 534 178 919 +4: 481 947 246 643 910 +4: 708 709 510 996 658 +4: 94 919 737 210 425 +4: 835 4 775 692 450 +4: 770 724 565 681 571 +4: 635 937 649 630 916 +4: 774 176 263 434 907 +4: 321 722 640 221 825 +4: 159 543 233 893 631 +4: 585 718 12 180 644 +4: 516 526 351 271 711 +4: 193 523 590 407 886 +4: 856 591 867 566 494 +4: 808 961 100 758 449 +4: 871 730 331 525 855 +4: 194 300 196 768 113 +4: 543 762 157 835 799 +4: 741 647 941 475 372 +4: 547 889 533 568 45 +4: 726 19 131 589 640 +4: 735 46 414 451 969 +4: 10 584 547 776 78 +4: 420 449 750 511 950 +4: 127 11 305 58 682 +4: 484 486 609 345 85 +4: 923 311 847 160 150 +4: 696 370 645 591 733 +4: 633 731 70 460 715 + 4/12 Test #4: task_utest ....................... Passed 0.00 sec test 5 Start 5: C++Lib @@ -5220,7 +5256,7 @@ 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 5/12 Test #5: C++Lib ........................... Passed 0.02 sec + 5/12 Test #5: C++Lib ........................... Passed 0.00 sec test 6 Start 6: kalign_itest_BB11001.tfa @@ -5243,15 +5279,15 @@ 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: -6: [2026-12-03 08:16:06] : LOG : Detected protein sequences. -6: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. -6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances -6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:16:06] : LOG : Building guide tree. -6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2026-12-03 08:16:06] : LOG : Aligning -6: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:59:33] : LOG : Detected protein sequences. +6: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. +6: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances +6: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:59:33] : LOG : Building guide tree. +6: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2025-10-31 01:59:33] : LOG : Aligning +6: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -5264,7 +5300,7 @@ 6: >2lef_A 6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.02 sec + 6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.00 sec test 7 Start 7: kalign_itest_BB11001_EOF.msf @@ -5287,15 +5323,15 @@ 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: -7: [2026-12-03 08:16:06] : LOG : Detected protein sequences. -7: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. -7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances -7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -7: [2026-12-03 08:16:06] : LOG : Building guide tree. -7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2026-12-03 08:16:06] : LOG : Aligning -7: [2026-12-03 08:16:06] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 +7: [2025-10-31 01:59:33] : LOG : Detected protein sequences. +7: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. +7: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances +7: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:59:33] : LOG : Building guide tree. +7: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2025-10-31 01:59:33] : LOG : Aligning +7: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -5308,7 +5344,7 @@ 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.03 sec + 7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.00 sec test 8 Start 8: kalign_itest_BB12006.msf @@ -5331,15 +5367,15 @@ 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: -8: [2026-12-03 08:16:06] : LOG : Detected protein sequences. -8: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. -8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances -8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -8: [2026-12-03 08:16:06] : LOG : Building guide tree. -8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -8: [2026-12-03 08:16:06] : LOG : Aligning -8: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 +8: [2025-10-31 01:59:33] : LOG : Detected protein sequences. +8: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. +8: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances +8: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:59:33] : LOG : Building guide tree. +8: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2025-10-31 01:59:33] : LOG : Aligning +8: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -5364,7 +5400,7 @@ 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- - 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.04 sec + 8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.01 sec test 9 Start 9: kalign_itest_BB12006.tfa @@ -5387,15 +5423,15 @@ 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: -9: [2026-12-03 08:16:06] : LOG : Detected protein sequences. -9: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances -9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -9: [2026-12-03 08:16:06] : LOG : Building guide tree. -9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -9: [2026-12-03 08:16:06] : LOG : Aligning -9: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 +9: [2025-10-31 01:59:33] : LOG : Detected protein sequences. +9: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +9: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances +9: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:59:33] : LOG : Building guide tree. +9: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2025-10-31 01:59:33] : LOG : Aligning +9: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -5420,7 +5456,7 @@ 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- - 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.03 sec + 9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.01 sec test 10 Start 10: kalign_itest_BB30014.msf @@ -5443,15 +5479,15 @@ 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: -10: [2026-12-03 08:16:06] : LOG : Detected protein sequences. -10: [2026-12-03 08:16:06] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances -10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -10: [2026-12-03 08:16:06] : LOG : Building guide tree. -10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -10: [2026-12-03 08:16:06] : LOG : Aligning -10: [2026-12-03 08:16:06] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 +10: [2025-10-31 01:59:33] : LOG : Detected protein sequences. +10: [2025-10-31 01:59:33] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +10: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances +10: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:59:33] : LOG : Building guide tree. +10: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2025-10-31 01:59:33] : LOG : Aligning +10: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -5476,7 +5512,7 @@ 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- -10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.04 sec +10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.01 sec test 11 Start 11: kalign_itest_BB30014.tfa @@ -5499,15 +5535,15 @@ 11: Bioinformatics (2019) 11: https://doi.org/10.1093/bioinformatics/btz795 11: -11: [2026-12-03 08:16:06] : LOG : Detected protein sequences. -11: [2026-12-03 08:16:06] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. -11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -11: [2026-12-03 08:16:06] : LOG : Calculating pairwise distances -11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 -11: [2026-12-03 08:16:06] : LOG : Building guide tree. -11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 -11: [2026-12-03 08:16:06] : LOG : Aligning -11: [2026-12-03 08:16:06] : LOG : CPU Time: 0.05u 00:00:00.05 Elapsed: 00:00:00.00 +11: [2025-10-31 01:59:33] : LOG : Detected protein sequences. +11: [2025-10-31 01:59:33] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. +11: [2025-10-31 01:59:33] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +11: [2025-10-31 01:59:33] : LOG : Calculating pairwise distances +11: [2025-10-31 01:59:33] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +11: [2025-10-31 01:59:33] : LOG : Building guide tree. +11: [2025-10-31 01:59:33] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00 +11: [2025-10-31 01:59:33] : LOG : Aligning +11: [2025-10-31 01:59:33] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- @@ -5816,36 +5852,36 @@ 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI -11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.11 sec +11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.05 sec test 12 Start 12: DSSIM_takes_a_min 12: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/dssim 12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 12: Test timeout computed to be: 1500 -12: [2026-12-03 08:16:06] : LOG : DSSim - a simplistic sequence simulator. -12: [2026-12-03 08:16:06] : LOG : Protein alignments - 20 seq +12: [2025-10-31 01:59:33] : LOG : DSSim - a simplistic sequence simulator. +12: [2025-10-31 01:59:33] : LOG : Protein alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2026-12-03 08:16:35] : LOG : Protein alignments - 1000 seq +12: [2025-10-31 01:59:36] : LOG : Protein alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2026-12-03 08:16:58] : LOG : Protein alignments - 10000 seq +12: [2025-10-31 01:59:47] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12: [2026-12-03 08:17:21] : LOG : DNA alignments - 20 seq +12: [2025-10-31 02:00:26] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 10% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [===== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 11% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 12% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [====== ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 13% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 14% [======= ] 15% [======= ] 15% [======= ] 15% [======= ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 15% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 16% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [======== ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 17% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 18% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========= ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 19% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 20% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 21% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 22% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [=========== ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 23% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 24% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============ ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 25% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 26% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============= ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 27% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 28% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 29% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 30% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [=============== ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 31% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 32% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================ ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 33% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 34% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================= ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 35% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 36% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 37% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 38% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [=================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 39% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 40% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [==================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 41% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 42% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [===================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 43% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 44% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [====================== ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 45% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 46% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================= ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 47% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 48% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [======================== ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 49% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 50% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================= ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 51% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 52% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 53% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 54% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [=========================== ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 55% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 56% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================ ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 57% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 58% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================= ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 59% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 60% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 61% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 62% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [=============================== ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 63% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 64% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================ ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 65% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 66% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================= ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 67% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 68% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 69% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 70% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [=================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 71% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 72% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [==================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 73% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 74% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [===================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 75% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 76% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [====================================== ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 77% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 78% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================= ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 79% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 80% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [======================================== ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 81% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 82% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================= ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 83% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 84% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 85% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 86% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [=========================================== ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 87% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 88% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================ ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 89% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 90% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================= ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 91% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 92% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 93% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 94% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [=============================================== ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 95% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 96% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================ ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 97% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 98% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [================================================= ] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2026-12-03 08:17:49] : LOG : DNA alignments - 1000 seq +12: [2025-10-31 02:01:13] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2026-12-03 08:18:05] : LOG : DNA alignments - 10000 seq +12: [2025-10-31 02:01:18] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12/12 Test #12: DSSIM_takes_a_min ................ Passed 128.54 sec +12/12 Test #12: DSSIM_takes_a_min ................ Passed 109.84 sec 100% tests passed, 0 tests failed out of 12 -Total Test time (real) = 136.69 sec +Total Test time (real) = 115.74 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kalign/ - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5904,8 +5940,8 @@ make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_md5sums dh_builddeb -dpkg-deb: building package 'kalign' in '../kalign_3.4.0-1_amd64.deb'. dpkg-deb: building package 'kalign-dbgsym' in '../kalign-dbgsym_3.4.0-1_amd64.deb'. +dpkg-deb: building package 'kalign' in '../kalign_3.4.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kalign_3.4.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kalign_3.4.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -5913,12 +5949,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/690477/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/690477/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3840511 and its subdirectories -I: Current time: Wed Dec 2 20:18:34 -12 2026 -I: pbuilder-time-stamp: 1796285914 +I: removing directory /srv/workspace/pbuilder/690477 and its subdirectories +I: Current time: Fri Oct 31 16:01:45 +14 2025 +I: pbuilder-time-stamp: 1761876105 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/kalign_3.4.0-1.diff: 95.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/kalign_3.4.0-1.diff.gz b2/build.log: 92.5% -- replaced with stdout Compressing the 1st log... b1/build.log: 92.5% -- replaced with stdout Fri Oct 31 02:01:53 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_kalign_forky_amd64_1761876113 + touch /var/log/reproducible-builds/diffoscope_stamp_kalign_forky_amd64_1761876113 + RESULT=0 + systemd-run '--description=diffoscope on kalign/1:3.4.0-1 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_14-60364 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL --run-session -c jenkins-reproducible-forky-diffoscope-7e46a939-b4a1-4cd5-9a5a-2e39b563dc5c -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/dbd-tmp-5dQDbyj ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/kalign_3.4.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/kalign_3.4.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/kalign_3.4.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b1/kalign_3.4.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b2/kalign_3.4.0-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_14-60364.service; invocation ID: ddbc2fd09e2c4a6bae094176fb6cef63 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/kalign_3.4.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/kalign_3.4.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/kalign_3.4.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b1/kalign_3.4.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.7Rl1v8PL/b2/kalign_3.4.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 200ms CPU time consumed: 179ms Memory peak: 17.3M (swap: 0B) _ _ _ | | ____ _| (_) __ _ _ __ | |/ / _` | | |/ _` | '_ \ | < (_| | | | (_| | | | | |_|\_\__,_|_|_|\__, |_| |_| |___/ Fri Oct 31 02:01:54 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 02:01:54 UTC 2025 I: kalign from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 02:01:54] INFO: Starting at 2025-10-31 02:01:54.523197 [2025-10-31 02:01:54] INFO: Generating the pages of 1 package(s) [2025-10-31 02:01:54] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/kalign didn't produce a buildlog, even though it has been built. [2025-10-31 02:01:54] INFO: Finished at 2025-10-31 02:01:54.807179, took: 0:00:00.283986 Fri Oct 31 02:01:54 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/kalign.html Fri Oct 31 02:01:54 UTC 2025 I: Removing signed kalign_3.4.0-1_amd64.buildinfo.asc files: removed './b1/kalign_3.4.0-1_amd64.buildinfo.asc' removed './b2/kalign_3.4.0-1_amd64.buildinfo.asc' 1761876114 amd64 forky kalign Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/kalign_3.4.0-1.rbuild.log: 92.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/kalign_3.4.0-1.rbuild.log.gz [2025-10-31 02:01:55] INFO: Starting at 2025-10-31 02:01:55.199090 [2025-10-31 02:01:55] INFO: Generating the pages of 1 package(s) [2025-10-31 02:01:55] INFO: Finished at 2025-10-31 02:01:55.496208, took: 0:00:00.297124 All cleanup done. Fri Oct 31 02:01:55 UTC 2025 - total duration: 0h 17m 41s. Fri Oct 31 02:01:55 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-e7SndxLr, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 17min 42.487s CPU time consumed: 3.750s Memory peak: 49.8M (swap: 0B)