Running as unit: rb-build-amd64_15-53159.service ==================================================================================== Tue Apr 22 09:48:44 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_15) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Tue Apr 22 09:48:44 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-F9hWDz0r" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Apr 22 09:48:44 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Tue Apr 22 09:48:44 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-w9uWru' Tue Apr 22 09:48:45 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Tue Apr 22 09:48:45 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-zGdo11' ok, let's check if maffilter is building anywhere yet… ok, maffilter is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of maffilter in unstable on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Tue Apr 22 09:49:07 UTC 2025 I: starting to build maffilter/unstable/amd64 on jenkins on '2025-04-22 09:48' Tue Apr 22 09:49:07 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/53159/console.log 1745315347 amd64 unstable maffilter Tue Apr 22 09:49:07 UTC 2025 I: Downloading source for unstable/maffilter=1.3.1+dfsg-6 --2025-04-22 09:49:07-- http://deb.debian.org/debian/pool/main/m/maffilter/maffilter_1.3.1%2bdfsg-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2238 (2.2K) [text/prs.lines.tag] Saving to: ‘maffilter_1.3.1+dfsg-6.dsc’ 0K .. 100% 386M=0s 2025-04-22 09:49:07 (386 MB/s) - ‘maffilter_1.3.1+dfsg-6.dsc’ saved [2238/2238] --2025-04-22 09:49:07-- http://deb.debian.org/debian/pool/main/m/maffilter/maffilter_1.3.1%2bdfsg-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2238 (2.2K) [text/prs.lines.tag] Saving to: ‘maffilter_1.3.1+dfsg-6.dsc’ 0K .. 100% 386M=0s 2025-04-22 09:49:07 (386 MB/s) - ‘maffilter_1.3.1+dfsg-6.dsc’ saved [2238/2238] Tue Apr 22 09:49:07 UTC 2025 I: maffilter_1.3.1+dfsg-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: maffilter Binary: maffilter, maffilter-examples Architecture: any all Version: 1.3.1+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Julien Dutheil , Pranav Ballaney Homepage: https://jydu.github.io/maffilter/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/maffilter Vcs-Git: https://salsa.debian.org/med-team/maffilter.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-omics-dev, libboost-iostreams-dev, zlib1g-dev, libbz2-dev Package-List: maffilter deb science optional arch=any maffilter-examples deb science optional arch=all Checksums-Sha1: 52fb7acc20ef914ef4e44676b316cf3753c46c9b 78668340 maffilter_1.3.1+dfsg.orig.tar.xz 38d6a27b6cb4736f809d80ef7f0c00ea2fe31427 4940 maffilter_1.3.1+dfsg-6.debian.tar.xz Checksums-Sha256: 1767aae6061ca7d12682f7ded1e1b9f6ecad3d03fcfa02ff24b5351d51d8dc70 78668340 maffilter_1.3.1+dfsg.orig.tar.xz 99b7f757063096a6d5c51725e8da009e89a93db24fb2b8bec744df818abcfac6 4940 maffilter_1.3.1+dfsg-6.debian.tar.xz Files: 3548c76d884bacc4ce267d70f304435e 78668340 maffilter_1.3.1+dfsg.orig.tar.xz b33270bbd567a7c6555149285d1215a9 4940 maffilter_1.3.1+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYCrHwACgkQPCZ2P2xn 5uIpFhAArz+NErkZNwZCfY0Un+O+osPVGHYlzl9B+Ei7uLqrLQS9Gu2QYjcEH2R8 Ea0y17CIjIlTpDrd1VyaIVbmFE0H7RJSJu4MjNF6rkRFOfith+7gXvQqdLa5mAjC e8Yb2aB7hztTz4tz9nN2pfktzAfcGf9y0ryrSTYrrGx9455Sv/OVLL2PaagUzdyH dyGC/8eIGZrXRDgIoXegqoWJgzFgpfpnpf7MbOrb/15FmlbJ1vg2Kmyi9rviz8tF NdqGbkRIIMWxLJGWzIKEDq6gR2aFkjqemaqaeBObx/iONjwjTKHXP1UDhU8GXYNX C2Z0kVVzNg39Z8i13GqtCRLCfhz7pY79u8LOZfu7Ido5xkD9Qcmpb7pZJxTG4ikm PsZ0mN9o5rPmHHFGAh6PGRJ6NlzqZYq3CAPYHdIQbnZgx9SyyPKStBpMzV7HKpLp VbD0z//i8dX5xZLNV1GemeIqO7g0mjYBlYLtbna70PLz7IMz+djXYOCQE1ZLbnhD dIFjD1xL3keGDJIo/OuwnkPClp/2rhqBCpgZDhz4kXnhykEJU+ENb4DtgVSsZDyH 0whfX4BURxge53wYamh90oUtVV097O+JzPlL2EmOlK6Mr+I4dqyTRgwmTODDqtzp Hyq9dT7zOgbNp1c5kAmF/ct6eZAsoi6+0NpBFhvedJBzw+YxD3U= =UcyI -----END PGP SIGNATURE----- Tue Apr 22 09:49:07 UTC 2025 I: Checking whether the package is not for us Tue Apr 22 09:49:07 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Tue Apr 22 09:49:07 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Tue Apr 22 09:49:07 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Tue Apr 22 09:49:07 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-A9HDw4' ==================================================================================== Tue Apr 22 09:49:08 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 maffilter unstable /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7 1.3.1+dfsg-6" as arguments. Tue Apr 22 09:49:08 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-BwXpYTb0" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Apr 22 09:49:08 UTC 2025 I: Downloading source for unstable/maffilter=1.3.1+dfsg-6 Reading package lists... NOTICE: 'maffilter' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/maffilter.git Please use: git clone https://salsa.debian.org/med-team/maffilter.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 78.7 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (dsc) [2238 B] Get:2 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (tar) [78.7 MB] Get:3 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (diff) [4940 B] Fetched 78.7 MB in 2s (35.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'maffilter' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/maffilter.git Please use: git clone https://salsa.debian.org/med-team/maffilter.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 78.7 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (dsc) [2238 B] Get:2 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (tar) [78.7 MB] Get:3 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (diff) [4940 B] Fetched 78.7 MB in 2s (35.3 MB/s) Download complete and in download only mode ============================================================================= Building maffilter in unstable on amd64 on ionos11-amd64 now. Date: Tue Apr 22 09:49:10 UTC 2025 Date UTC: Tue Apr 22 09:49:10 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 21 21:49:11 -12 2025 I: pbuilder-time-stamp: 1745315351 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [maffilter_1.3.1+dfsg-6.dsc] I: copying [./maffilter_1.3.1+dfsg.orig.tar.xz] I: copying [./maffilter_1.3.1+dfsg-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./maffilter_1.3.1+dfsg-6.dsc: unsupported subcommand dpkg-source: info: extracting maffilter in maffilter-1.3.1+dfsg dpkg-source: info: unpacking maffilter_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking maffilter_1.3.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1510499/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='55e7731b5669472687d0d3dd4e7fb7a7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1510499' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/pbuilderrc_z4nv --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b1 --logfile b1/build.log maffilter_1.3.1+dfsg-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1510499/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-omics-dev, libboost-iostreams-dev, zlib1g-dev, libbz2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-omics-dev; however: Package libbpp-phyl-omics-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl-omics-dev{a} libbpp-phyl-omics3t64{a} libbpp-phyl12t64{a} libbpp-seq-dev{a} libbpp-seq-omics-dev{a} libbpp-seq-omics3t64{a} libbpp-seq12t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 75.5 MB of archives. After unpacking 465 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0051 [42.8 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.13.0-3 [382 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 57 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-3 [215 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-3 [10.8 MB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 71 http://deb.debian.org/debian unstable/main amd64 libbpp-core4t64 amd64 2.4.1-13+b1 [629 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libbpp-core-dev amd64 2.4.1-13+b1 [967 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libbpp-seq12t64 amd64 2.4.1-13 [510 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl12t64 amd64 2.4.1-11+b2 [1711 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-dev amd64 2.4.1-13 [745 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-dev amd64 2.4.1-11+b2 [2997 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-omics3t64 amd64 2.4.1-12 [230 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-omics3t64 amd64 2.4.1-7+b1 [73.2 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-omics-dev amd64 2.4.1-12 [378 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-omics-dev amd64 2.4.1-7+b1 [129 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.1.1-1+b1 [232 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.1.1-1 [1753 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 75.5 MB in 6s (12.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-8_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-8_amd64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package sensible-utils. 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Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../12-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../13-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../14-ucf_3.0051_all.deb ... 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Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../56-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../57-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../58-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../59-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../60-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../61-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libicu76:amd64. Preparing to unpack .../62-libicu76_76.1-3_amd64.deb ... Unpacking libicu76:amd64 (76.1-3) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../63-icu-devtools_76.1-3_amd64.deb ... Unpacking icu-devtools (76.1-3) ... Selecting previously unselected package libboost1.83-dev:amd64. Preparing to unpack .../64-libboost1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-regex1.83.0:amd64. Preparing to unpack .../65-libboost-regex1.83.0_1.83.0-4.2_amd64.deb ... Unpacking libboost-regex1.83.0:amd64 (1.83.0-4.2) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../66-libicu-dev_76.1-3_amd64.deb ... Unpacking libicu-dev:amd64 (76.1-3) ... Selecting previously unselected package libboost-regex1.83-dev:amd64. Preparing to unpack .../67-libboost-regex1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-iostreams1.83-dev:amd64. Preparing to unpack .../68-libboost-iostreams1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-iostreams-dev:amd64. Preparing to unpack .../69-libboost-iostreams-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libbpp-core4t64:amd64. Preparing to unpack .../70-libbpp-core4t64_2.4.1-13+b1_amd64.deb ... Unpacking libbpp-core4t64:amd64 (2.4.1-13+b1) ... Selecting previously unselected package libbpp-core-dev:amd64. Preparing to unpack .../71-libbpp-core-dev_2.4.1-13+b1_amd64.deb ... Unpacking libbpp-core-dev:amd64 (2.4.1-13+b1) ... Selecting previously unselected package libbpp-seq12t64:amd64. Preparing to unpack .../72-libbpp-seq12t64_2.4.1-13_amd64.deb ... Unpacking libbpp-seq12t64:amd64 (2.4.1-13) ... Selecting previously unselected package libbpp-phyl12t64:amd64. Preparing to unpack .../73-libbpp-phyl12t64_2.4.1-11+b2_amd64.deb ... Unpacking libbpp-phyl12t64:amd64 (2.4.1-11+b2) ... Selecting previously unselected package libbpp-seq-dev:amd64. Preparing to unpack .../74-libbpp-seq-dev_2.4.1-13_amd64.deb ... Unpacking libbpp-seq-dev:amd64 (2.4.1-13) ... Selecting previously unselected package libbpp-phyl-dev:amd64. Preparing to unpack .../75-libbpp-phyl-dev_2.4.1-11+b2_amd64.deb ... Unpacking libbpp-phyl-dev:amd64 (2.4.1-11+b2) ... Selecting previously unselected package libbpp-seq-omics3t64:amd64. Preparing to unpack .../76-libbpp-seq-omics3t64_2.4.1-12_amd64.deb ... Unpacking libbpp-seq-omics3t64:amd64 (2.4.1-12) ... Selecting previously unselected package libbpp-phyl-omics3t64:amd64. Preparing to unpack .../77-libbpp-phyl-omics3t64_2.4.1-7+b1_amd64.deb ... Unpacking libbpp-phyl-omics3t64:amd64 (2.4.1-7+b1) ... Selecting previously unselected package libbpp-seq-omics-dev:amd64. Preparing to unpack .../78-libbpp-seq-omics-dev_2.4.1-12_amd64.deb ... Unpacking libbpp-seq-omics-dev:amd64 (2.4.1-12) ... Selecting previously unselected package libbpp-phyl-omics-dev:amd64. Preparing to unpack .../79-libbpp-phyl-omics-dev_2.4.1-7+b1_amd64.deb ... Unpacking libbpp-phyl-omics-dev:amd64 (2.4.1-7+b1) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../80-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../81-libtext-unidecode-perl_1.30-3_all.deb ... Unpacking libtext-unidecode-perl (1.30-3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../82-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../83-libxml-sax-base-perl_1.09-3_all.deb ... 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Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libboost1.83-dev:amd64 (1.83.0-4.2) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libbpp-core4t64:amd64 (2.4.1-13+b1) ... Setting up libboost-regex1.83.0:amd64 (1.83.0-4.2) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up file (1:5.46-5) ... Setting up texinfo-lib (7.1.1-1+b1) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up libbpp-core-dev:amd64 (2.4.1-13+b1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-8) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-8) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.6-2) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libicu76:amd64 (76.1-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libbpp-seq12t64:amd64 (2.4.1-13) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libbpp-seq-dev:amd64 (2.4.1-13) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libbpp-phyl12t64:amd64 (2.4.1-11+b2) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-phyl-dev:amd64 (2.4.1-11+b2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-3) ... Setting up ucf (3.0051) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libbpp-seq-omics3t64:amd64 (2.4.1-12) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libicu-dev:amd64 (76.1-3) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libbpp-phyl-omics3t64:amd64 (2.4.1-7+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libbpp-seq-omics-dev:amd64 (2.4.1-12) ... Setting up libbpp-phyl-omics-dev:amd64 (2.4.1-7+b1) ... Setting up libcurl4t64:amd64 (8.13.0-3) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... Setting up debhelper (13.24.2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up texinfo (7.1.1-1) ... Setting up cmake (3.31.6-2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/maffilter-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../maffilter_1.3.1+dfsg-6_source.changes dpkg-buildpackage: info: source package maffilter dpkg-buildpackage: info: source version 1.3.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:6 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-seq-omics 3.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-phyl-omics 3.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3.0.0 -- includes: /usr/include CMake Warning (dev) at CMakeLists.txt:72 (FIND_PACKAGE): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.34.0") found components: iostreams -- Boost libraries found here: includes: /usr/include dynamic libraries: Boost::iostreams -- Library z found here: includes: /usr/include dynamic libraries: /usr/lib/x86_64-linux-gnu/libz.so -- Library bz2 found here: includes: /usr/include dynamic libraries: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/depend make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/doc /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o [ 50%] Generating info page [ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o [ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o [ 62%] Compressing manpage maffilter.1 [ 75%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc && /usr/bin/makeinfo --no-split -o /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info /build/reproducible-path/maffilter-1.3.1+dfsg/doc/maffilter.texi cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o -MF CMakeFiles/maffilter.dir/MafFilter.cpp.o.d -o CMakeFiles/maffilter.dir/MafFilter.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/man/maffilter.1 > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man/maffilter.1.gz cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/OutputAsFeaturesMafIterator.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/SystemCallMafIterator.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/TreeBuildingSystemCallMafIterator.cpp make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target man [ 87%] Compressing info page cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info.gz make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target info [100%] Linking CXX executable maffilter cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/cmake -E cmake_link_script CMakeFiles/maffilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/maffilter.dir/link.d CMakeFiles/maffilter.dir/MafFilter.cpp.o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -o maffilter /usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3.0.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 -lz -lbz2 /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [100%] Built target maffilter make[2]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/maffilter-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/bin/maffilter -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/share/info/maffilter.info.gz -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/share/man/man1/maffilter.1.gz make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg' find debian/*/usr/share -name "*.bpp" -executable -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'maffilter' in '../maffilter_1.3.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'maffilter-dbgsym' in '../maffilter-dbgsym_1.3.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'maffilter-examples' in '../maffilter-examples_1.3.1+dfsg-6_all.deb'. dpkg-genbuildinfo --build=binary -O../maffilter_1.3.1+dfsg-6_amd64.buildinfo dpkg-genchanges --build=binary -O../maffilter_1.3.1+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1510499 and its subdirectories I: Current time: Mon Apr 21 21:52:01 -12 2025 I: pbuilder-time-stamp: 1745315521 Tue Apr 22 09:52:01 UTC 2025 I: Signing ./b1/maffilter_1.3.1+dfsg-6_amd64.buildinfo as maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc Tue Apr 22 09:52:01 UTC 2025 I: Signed ./b1/maffilter_1.3.1+dfsg-6_amd64.buildinfo as ./b1/maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc Tue Apr 22 09:52:01 UTC 2025 - build #1 for maffilter/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Tue Apr 22 09:52:01 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-BwXpYTb0, removing. /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 09:52 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 09:49 b2 -rw-r--r-- 1 jenkins jenkins 2238 Mar 26 2024 maffilter_1.3.1+dfsg-6.dsc -rw------- 1 jenkins jenkins 3381 Apr 22 09:49 rbuildlog.XJJk7wy /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b1: total 80756 -rw-r--r-- 1 jenkins jenkins 53561 Apr 22 09:52 build.log -rw-r--r-- 1 jenkins jenkins 3106252 Apr 22 09:52 maffilter-dbgsym_1.3.1+dfsg-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 79214828 Apr 22 09:52 maffilter-examples_1.3.1+dfsg-6_all.deb -rw-r--r-- 1 jenkins jenkins 4940 Apr 22 09:52 maffilter_1.3.1+dfsg-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2238 Apr 22 09:52 maffilter_1.3.1+dfsg-6.dsc -rw-r--r-- 1 jenkins jenkins 7319 Apr 22 09:52 maffilter_1.3.1+dfsg-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8201 Apr 22 09:52 maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1902 Apr 22 09:52 maffilter_1.3.1+dfsg-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 268476 Apr 22 09:52 maffilter_1.3.1+dfsg-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1326 Apr 22 09:52 maffilter_1.3.1+dfsg-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b2: total 0 Tue Apr 22 09:52:02 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 21 21:49:11 -12 2025 I: pbuilder-time-stamp: 1745315351 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [maffilter_1.3.1+dfsg-6.dsc] I: copying [./maffilter_1.3.1+dfsg.orig.tar.xz] I: copying [./maffilter_1.3.1+dfsg-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./maffilter_1.3.1+dfsg-6.dsc: unsupported subcommand dpkg-source: info: extracting maffilter in maffilter-1.3.1+dfsg dpkg-source: info: unpacking maffilter_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking maffilter_1.3.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1510499/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='55e7731b5669472687d0d3dd4e7fb7a7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1510499' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/pbuilderrc_z4nv --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b1 --logfile b1/build.log maffilter_1.3.1+dfsg-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1510499/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-omics-dev, libboost-iostreams-dev, zlib1g-dev, libbz2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-omics-dev; however: Package libbpp-phyl-omics-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl-omics-dev{a} libbpp-phyl-omics3t64{a} libbpp-phyl12t64{a} libbpp-seq-dev{a} libbpp-seq-omics-dev{a} libbpp-seq-omics3t64{a} libbpp-seq12t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 75.5 MB of archives. After unpacking 465 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0051 [42.8 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.13.0-3 [382 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 57 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-3 [215 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-3 [10.8 MB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 71 http://deb.debian.org/debian unstable/main amd64 libbpp-core4t64 amd64 2.4.1-13+b1 [629 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libbpp-core-dev amd64 2.4.1-13+b1 [967 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libbpp-seq12t64 amd64 2.4.1-13 [510 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl12t64 amd64 2.4.1-11+b2 [1711 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-dev amd64 2.4.1-13 [745 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-dev amd64 2.4.1-11+b2 [2997 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-omics3t64 amd64 2.4.1-12 [230 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-omics3t64 amd64 2.4.1-7+b1 [73.2 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-omics-dev amd64 2.4.1-12 [378 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-omics-dev amd64 2.4.1-7+b1 [129 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.1.1-1+b1 [232 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.1.1-1 [1753 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 75.5 MB in 6s (12.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-8_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-8_amd64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package sensible-utils. 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Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../12-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../13-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../14-ucf_3.0051_all.deb ... 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Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../56-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../57-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../58-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../59-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../60-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../61-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libicu76:amd64. Preparing to unpack .../62-libicu76_76.1-3_amd64.deb ... Unpacking libicu76:amd64 (76.1-3) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../63-icu-devtools_76.1-3_amd64.deb ... Unpacking icu-devtools (76.1-3) ... Selecting previously unselected package libboost1.83-dev:amd64. Preparing to unpack .../64-libboost1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-regex1.83.0:amd64. Preparing to unpack .../65-libboost-regex1.83.0_1.83.0-4.2_amd64.deb ... Unpacking libboost-regex1.83.0:amd64 (1.83.0-4.2) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../66-libicu-dev_76.1-3_amd64.deb ... Unpacking libicu-dev:amd64 (76.1-3) ... Selecting previously unselected package libboost-regex1.83-dev:amd64. Preparing to unpack .../67-libboost-regex1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-iostreams1.83-dev:amd64. Preparing to unpack .../68-libboost-iostreams1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-iostreams-dev:amd64. Preparing to unpack .../69-libboost-iostreams-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libbpp-core4t64:amd64. Preparing to unpack .../70-libbpp-core4t64_2.4.1-13+b1_amd64.deb ... Unpacking libbpp-core4t64:amd64 (2.4.1-13+b1) ... Selecting previously unselected package libbpp-core-dev:amd64. Preparing to unpack .../71-libbpp-core-dev_2.4.1-13+b1_amd64.deb ... Unpacking libbpp-core-dev:amd64 (2.4.1-13+b1) ... Selecting previously unselected package libbpp-seq12t64:amd64. Preparing to unpack .../72-libbpp-seq12t64_2.4.1-13_amd64.deb ... Unpacking libbpp-seq12t64:amd64 (2.4.1-13) ... Selecting previously unselected package libbpp-phyl12t64:amd64. Preparing to unpack .../73-libbpp-phyl12t64_2.4.1-11+b2_amd64.deb ... Unpacking libbpp-phyl12t64:amd64 (2.4.1-11+b2) ... Selecting previously unselected package libbpp-seq-dev:amd64. Preparing to unpack .../74-libbpp-seq-dev_2.4.1-13_amd64.deb ... Unpacking libbpp-seq-dev:amd64 (2.4.1-13) ... Selecting previously unselected package libbpp-phyl-dev:amd64. Preparing to unpack .../75-libbpp-phyl-dev_2.4.1-11+b2_amd64.deb ... Unpacking libbpp-phyl-dev:amd64 (2.4.1-11+b2) ... Selecting previously unselected package libbpp-seq-omics3t64:amd64. Preparing to unpack .../76-libbpp-seq-omics3t64_2.4.1-12_amd64.deb ... Unpacking libbpp-seq-omics3t64:amd64 (2.4.1-12) ... Selecting previously unselected package libbpp-phyl-omics3t64:amd64. Preparing to unpack .../77-libbpp-phyl-omics3t64_2.4.1-7+b1_amd64.deb ... Unpacking libbpp-phyl-omics3t64:amd64 (2.4.1-7+b1) ... Selecting previously unselected package libbpp-seq-omics-dev:amd64. Preparing to unpack .../78-libbpp-seq-omics-dev_2.4.1-12_amd64.deb ... Unpacking libbpp-seq-omics-dev:amd64 (2.4.1-12) ... Selecting previously unselected package libbpp-phyl-omics-dev:amd64. Preparing to unpack .../79-libbpp-phyl-omics-dev_2.4.1-7+b1_amd64.deb ... Unpacking libbpp-phyl-omics-dev:amd64 (2.4.1-7+b1) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../80-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../81-libtext-unidecode-perl_1.30-3_all.deb ... Unpacking libtext-unidecode-perl (1.30-3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../82-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../83-libxml-sax-base-perl_1.09-3_all.deb ... 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Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libboost1.83-dev:amd64 (1.83.0-4.2) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libbpp-core4t64:amd64 (2.4.1-13+b1) ... Setting up libboost-regex1.83.0:amd64 (1.83.0-4.2) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up file (1:5.46-5) ... Setting up texinfo-lib (7.1.1-1+b1) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up libbpp-core-dev:amd64 (2.4.1-13+b1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-8) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-8) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.6-2) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libicu76:amd64 (76.1-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libbpp-seq12t64:amd64 (2.4.1-13) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libbpp-seq-dev:amd64 (2.4.1-13) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libbpp-phyl12t64:amd64 (2.4.1-11+b2) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-phyl-dev:amd64 (2.4.1-11+b2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-3) ... Setting up ucf (3.0051) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libbpp-seq-omics3t64:amd64 (2.4.1-12) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libicu-dev:amd64 (76.1-3) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libbpp-phyl-omics3t64:amd64 (2.4.1-7+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libbpp-seq-omics-dev:amd64 (2.4.1-12) ... Setting up libbpp-phyl-omics-dev:amd64 (2.4.1-7+b1) ... Setting up libcurl4t64:amd64 (8.13.0-3) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... Setting up debhelper (13.24.2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up texinfo (7.1.1-1) ... Setting up cmake (3.31.6-2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/maffilter-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../maffilter_1.3.1+dfsg-6_source.changes dpkg-buildpackage: info: source package maffilter dpkg-buildpackage: info: source version 1.3.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:6 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-seq-omics 3.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-phyl-omics 3.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3.0.0 -- includes: /usr/include CMake Warning (dev) at CMakeLists.txt:72 (FIND_PACKAGE): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.34.0") found components: iostreams -- Boost libraries found here: includes: /usr/include dynamic libraries: Boost::iostreams -- Library z found here: includes: /usr/include dynamic libraries: /usr/lib/x86_64-linux-gnu/libz.so -- Library bz2 found here: includes: /usr/include dynamic libraries: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/depend make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/doc /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o [ 50%] Generating info page [ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o [ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o [ 62%] Compressing manpage maffilter.1 [ 75%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc && /usr/bin/makeinfo --no-split -o /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info /build/reproducible-path/maffilter-1.3.1+dfsg/doc/maffilter.texi cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o -MF CMakeFiles/maffilter.dir/MafFilter.cpp.o.d -o CMakeFiles/maffilter.dir/MafFilter.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/man/maffilter.1 > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man/maffilter.1.gz cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/OutputAsFeaturesMafIterator.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/SystemCallMafIterator.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/TreeBuildingSystemCallMafIterator.cpp make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target man [ 87%] Compressing info page cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info.gz make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target info [100%] Linking CXX executable maffilter cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/cmake -E cmake_link_script CMakeFiles/maffilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/maffilter.dir/link.d CMakeFiles/maffilter.dir/MafFilter.cpp.o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -o maffilter /usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3.0.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 -lz -lbz2 /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [100%] Built target maffilter make[2]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/maffilter-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/bin/maffilter -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/share/info/maffilter.info.gz -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/share/man/man1/maffilter.1.gz make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg' find debian/*/usr/share -name "*.bpp" -executable -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'maffilter' in '../maffilter_1.3.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'maffilter-dbgsym' in '../maffilter-dbgsym_1.3.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'maffilter-examples' in '../maffilter-examples_1.3.1+dfsg-6_all.deb'. dpkg-genbuildinfo --build=binary -O../maffilter_1.3.1+dfsg-6_amd64.buildinfo dpkg-genchanges --build=binary -O../maffilter_1.3.1+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1510499 and its subdirectories I: Current time: Mon Apr 21 21:52:01 -12 2025 I: pbuilder-time-stamp: 1745315521 Tue Apr 22 09:52:03 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Apr 22 09:52:03 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Apr 22 09:52:03 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Tue Apr 22 09:52:03 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-F4inIA' ==================================================================================== Mon May 25 16:15:04 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 maffilter unstable /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7 1.3.1+dfsg-6" as arguments. Mon May 25 16:15:04 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-biGofXy7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon May 25 16:15:04 UTC 2026 I: Downloading source for unstable/maffilter=1.3.1+dfsg-6 Reading package lists... NOTICE: 'maffilter' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/maffilter.git Please use: git clone https://salsa.debian.org/med-team/maffilter.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 78.7 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (dsc) [2238 B] Get:2 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (tar) [78.7 MB] Get:3 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (diff) [4940 B] Fetched 78.7 MB in 2s (37.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'maffilter' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/maffilter.git Please use: git clone https://salsa.debian.org/med-team/maffilter.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 78.7 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (dsc) [2238 B] Get:2 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (tar) [78.7 MB] Get:3 http://deb.debian.org/debian unstable/main maffilter 1.3.1+dfsg-6 (diff) [4940 B] Fetched 78.7 MB in 2s (37.1 MB/s) Download complete and in download only mode ============================================================================= Re-Building maffilter in unstable on amd64 on ionos15-amd64 now. Date: Mon May 25 16:15:07 UTC 2026 Date UTC: Mon May 25 16:15:07 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/pbuilderrc_w9vg + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' maffilter = debian-installer -o maffilter = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' maffilter = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/pbuilderrc_w9vg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b2 --logfile b2/build.log maffilter_1.3.1+dfsg-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue May 26 06:15:07 +14 2026 I: pbuilder-time-stamp: 1779725707 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [maffilter_1.3.1+dfsg-6.dsc] I: copying [./maffilter_1.3.1+dfsg.orig.tar.xz] I: copying [./maffilter_1.3.1+dfsg-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./maffilter_1.3.1+dfsg-6.dsc: unsupported subcommand dpkg-source: info: extracting maffilter in maffilter-1.3.1+dfsg dpkg-source: info: unpacking maffilter_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking maffilter_1.3.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 25 16:15 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=dc096ea601834675bfb9a2cfda97ed0e LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2699065 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/pbuilderrc_w9vg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b2 --logfile b2/build.log maffilter_1.3.1+dfsg-6.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-omics-dev, libboost-iostreams-dev, zlib1g-dev, libbz2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-omics-dev; however: Package libbpp-phyl-omics-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl-omics-dev{a} libbpp-phyl-omics3t64{a} libbpp-phyl12t64{a} libbpp-seq-dev{a} libbpp-seq-omics-dev{a} libbpp-seq-omics3t64{a} libbpp-seq12t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 75.5 MB of archives. After unpacking 465 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0051 [42.8 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.13.0-3 [382 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 57 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-3 [215 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-3 [10.8 MB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 71 http://deb.debian.org/debian unstable/main amd64 libbpp-core4t64 amd64 2.4.1-13+b1 [629 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libbpp-core-dev amd64 2.4.1-13+b1 [967 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libbpp-seq12t64 amd64 2.4.1-13 [510 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl12t64 amd64 2.4.1-11+b2 [1711 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-dev amd64 2.4.1-13 [745 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-dev amd64 2.4.1-11+b2 [2997 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-omics3t64 amd64 2.4.1-12 [230 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-omics3t64 amd64 2.4.1-7+b1 [73.2 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libbpp-seq-omics-dev amd64 2.4.1-12 [378 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libbpp-phyl-omics-dev amd64 2.4.1-7+b1 [129 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.1.1-1+b1 [232 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.1.1-1 [1753 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 75.5 MB in 4s (21.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-8_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-8_amd64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../12-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../13-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../14-ucf_3.0051_all.deb ... Moving old data out of the way Unpacking ucf (3.0051) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../20-cmake-data_3.31.6-2_all.deb ... Unpacking cmake-data (3.31.6-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../21-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../22-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../23-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../24-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../25-libcom-err2_1.47.2-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../26-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../27-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../28-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../29-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../30-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../31-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../32-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../33-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../34-libldap2_2.6.9+dfsg-2_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../35-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../36-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../37-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../38-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../39-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../40-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../41-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../42-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../43-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../44-libcurl4t64_8.13.0-3_amd64.deb ... Unpacking libcurl4t64:amd64 (8.13.0-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../45-libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../46-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../47-librhash1_1.4.5-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../48-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../49-cmake_3.31.6-2_amd64.deb ... Unpacking cmake (3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../50-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../51-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../52-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../53-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../54-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../55-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../56-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../57-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../58-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../59-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../60-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../61-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libicu76:amd64. Preparing to unpack .../62-libicu76_76.1-3_amd64.deb ... Unpacking libicu76:amd64 (76.1-3) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../63-icu-devtools_76.1-3_amd64.deb ... Unpacking icu-devtools (76.1-3) ... Selecting previously unselected package libboost1.83-dev:amd64. Preparing to unpack .../64-libboost1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-regex1.83.0:amd64. Preparing to unpack .../65-libboost-regex1.83.0_1.83.0-4.2_amd64.deb ... Unpacking libboost-regex1.83.0:amd64 (1.83.0-4.2) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../66-libicu-dev_76.1-3_amd64.deb ... Unpacking libicu-dev:amd64 (76.1-3) ... Selecting previously unselected package libboost-regex1.83-dev:amd64. Preparing to unpack .../67-libboost-regex1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... 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Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libboost1.83-dev:amd64 (1.83.0-4.2) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libbpp-core4t64:amd64 (2.4.1-13+b1) ... Setting up libboost-regex1.83.0:amd64 (1.83.0-4.2) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up file (1:5.46-5) ... Setting up texinfo-lib (7.1.1-1+b1) ... 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Setting up cmake-data (3.31.6-2) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libicu76:amd64 (76.1-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libbpp-seq12t64:amd64 (2.4.1-13) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libbpp-seq-dev:amd64 (2.4.1-13) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libbpp-phyl12t64:amd64 (2.4.1-11+b2) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-phyl-dev:amd64 (2.4.1-11+b2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-3) ... Setting up ucf (3.0051) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libbpp-seq-omics3t64:amd64 (2.4.1-12) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libicu-dev:amd64 (76.1-3) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libbpp-phyl-omics3t64:amd64 (2.4.1-7+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libbpp-seq-omics-dev:amd64 (2.4.1-12) ... Setting up libbpp-phyl-omics-dev:amd64 (2.4.1-7+b1) ... Setting up libcurl4t64:amd64 (8.13.0-3) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... Setting up debhelper (13.24.2) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up texinfo (7.1.1-1) ... Setting up cmake (3.31.6-2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/maffilter-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../maffilter_1.3.1+dfsg-6_source.changes dpkg-buildpackage: info: source package maffilter dpkg-buildpackage: info: source version 1.3.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:6 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-seq-omics 3.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-phyl-omics 3.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3.0.0 -- includes: /usr/include CMake Warning (dev) at CMakeLists.txt:72 (FIND_PACKAGE): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.34.0") found components: iostreams -- Boost libraries found here: includes: /usr/include dynamic libraries: Boost::iostreams -- Library z found here: includes: /usr/include dynamic libraries: /usr/lib/x86_64-linux-gnu/libz.so -- Library bz2 found here: includes: /usr/include dynamic libraries: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/depend make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/doc /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [ 12%] Generating info page [ 62%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o [ 62%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o [ 62%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o [ 62%] Compressing manpage maffilter.1 [ 75%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc && /usr/bin/makeinfo --no-split -o /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info /build/reproducible-path/maffilter-1.3.1+dfsg/doc/maffilter.texi cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/OutputAsFeaturesMafIterator.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/man/maffilter.1 > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man/maffilter.1.gz cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o -MF CMakeFiles/maffilter.dir/MafFilter.cpp.o.d -o CMakeFiles/maffilter.dir/MafFilter.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/SystemCallMafIterator.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/TreeBuildingSystemCallMafIterator.cpp make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target man [ 87%] Compressing info page cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info.gz make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target info [100%] Linking CXX executable maffilter cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/cmake -E cmake_link_script CMakeFiles/maffilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/maffilter.dir/link.d CMakeFiles/maffilter.dir/MafFilter.cpp.o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -o maffilter /usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3.0.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 -lz -lbz2 /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' [100%] Built target maffilter make[2]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/maffilter-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/bin/maffilter -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/share/info/maffilter.info.gz -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/share/man/man1/maffilter.1.gz make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg' find debian/*/usr/share -name "*.bpp" -executable -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'maffilter' in '../maffilter_1.3.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'maffilter-dbgsym' in '../maffilter-dbgsym_1.3.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'maffilter-examples' in '../maffilter-examples_1.3.1+dfsg-6_all.deb'. dpkg-genbuildinfo --build=binary -O../maffilter_1.3.1+dfsg-6_amd64.buildinfo dpkg-genchanges --build=binary -O../maffilter_1.3.1+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2699065 and its subdirectories I: Current time: Tue May 26 06:17:45 +14 2026 I: pbuilder-time-stamp: 1779725865 + false + set +x Mon May 25 16:17:45 UTC 2026 I: Signing ./b2/maffilter_1.3.1+dfsg-6_amd64.buildinfo as maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc Mon May 25 16:17:46 UTC 2026 I: Signed ./b2/maffilter_1.3.1+dfsg-6_amd64.buildinfo as ./b2/maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc Mon May 25 16:17:46 UTC 2026 - build #2 for maffilter/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Mon May 25 16:17:46 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-biGofXy7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7: total 72 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 09:52 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 09:54 b2 -rw-r--r-- 1 jenkins jenkins 2238 Mar 26 2024 maffilter_1.3.1+dfsg-6.dsc -rw------- 1 jenkins jenkins 57231 Apr 22 09:52 rbuildlog.XJJk7wy /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b1: total 80848 -rw-r--r-- 1 jenkins jenkins 53561 Apr 22 09:52 build.log -rw-r--r-- 1 jenkins jenkins 3106252 Apr 22 09:52 maffilter-dbgsym_1.3.1+dfsg-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 79214828 Apr 22 09:52 maffilter-examples_1.3.1+dfsg-6_all.deb -rw-r--r-- 1 jenkins jenkins 4940 Apr 22 09:52 maffilter_1.3.1+dfsg-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2238 Apr 22 09:52 maffilter_1.3.1+dfsg-6.dsc -rw-r--r-- 1 jenkins jenkins 7319 Apr 22 09:52 maffilter_1.3.1+dfsg-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8201 Apr 22 09:52 maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1902 Apr 22 09:52 maffilter_1.3.1+dfsg-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 268476 Apr 22 09:52 maffilter_1.3.1+dfsg-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1326 Apr 22 09:52 maffilter_1.3.1+dfsg-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b2: total 80756 -rw-r--r-- 1 jenkins jenkins 55506 Apr 22 09:54 build.log -rw-r--r-- 1 jenkins jenkins 3106252 Apr 22 09:54 maffilter-dbgsym_1.3.1+dfsg-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 79214828 Apr 22 09:54 maffilter-examples_1.3.1+dfsg-6_all.deb -rw-r--r-- 1 jenkins jenkins 4940 Apr 22 09:54 maffilter_1.3.1+dfsg-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2238 Apr 22 09:54 maffilter_1.3.1+dfsg-6.dsc -rw-r--r-- 1 jenkins jenkins 7330 Apr 22 09:54 maffilter_1.3.1+dfsg-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8212 Apr 22 09:54 maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1902 Apr 22 09:54 maffilter_1.3.1+dfsg-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 268476 Apr 22 09:54 maffilter_1.3.1+dfsg-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1326 Apr 22 09:54 maffilter_1.3.1+dfsg-6_source.changes Tue Apr 22 09:54:47 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Apr 22 09:54:47 UTC 2025 I: maffilter_1.3.1+dfsg-6_amd64.changes: Format: 1.8 Date: Tue, 26 Mar 2024 09:59:19 +0100 Source: maffilter Binary: maffilter maffilter-dbgsym maffilter-examples Architecture: amd64 all Version: 1.3.1+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: maffilter - process genome alignment in the Multiple Alignment Format maffilter-examples - process genome alignment in the Multiple Alignment Format (exampl Changes: maffilter (1.3.1+dfsg-6) unstable; urgency=medium . * Team upload. * Added patch to combine upstream's c++ flags with out own. * d/rules: simplified Checksums-Sha1: 035e99fe351d5716203220e31ac78d9a92c83f04 3106252 maffilter-dbgsym_1.3.1+dfsg-6_amd64.deb 67b2e7e58203dcbd9c0a13d70955ce58a1b03644 79214828 maffilter-examples_1.3.1+dfsg-6_all.deb fd2e723a9039ccefca6bd60518fe95c4ef568d11 7319 maffilter_1.3.1+dfsg-6_amd64.buildinfo d0e2ce68c9dae404a83ff899aea35cf5ac332f12 268476 maffilter_1.3.1+dfsg-6_amd64.deb Checksums-Sha256: ba80e222939ef68350fbdf24e3f7da436e3cdcf5bbc02c7f1424517fdd113c45 3106252 maffilter-dbgsym_1.3.1+dfsg-6_amd64.deb 06db35a5ab659358ee4e28773d80d3632896e16d3a382ad210fee976d392a2fa 79214828 maffilter-examples_1.3.1+dfsg-6_all.deb b58225cd0bf0d3f88517aa684d6765fb4e9ee6efbc9472edbe33b6295ec9c144 7319 maffilter_1.3.1+dfsg-6_amd64.buildinfo 825e5ff0685e068659a2bbb3a9032ef5052d6b69486a573040e8c4807bc400ce 268476 maffilter_1.3.1+dfsg-6_amd64.deb Files: 8dbafc566b20d2fa21846dad798c6e83 3106252 debug optional maffilter-dbgsym_1.3.1+dfsg-6_amd64.deb 1ecf76f5a27fabf87fa64bd808cd5c93 79214828 science optional maffilter-examples_1.3.1+dfsg-6_all.deb e454ebf113673c7a011999ea9598a796 7319 science optional maffilter_1.3.1+dfsg-6_amd64.buildinfo 0d6370129b8dea4e6700555af54f3441 268476 science optional maffilter_1.3.1+dfsg-6_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/maffilter_1.3.1+dfsg-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/maffilter_1.3.1+dfsg-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/maffilter_1.3.1+dfsg-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/maffilter_1.3.1+dfsg-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/maffilter_1.3.1+dfsg-6_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/maffilter_1.3.1+dfsg-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-22 09:52:02.408172773 +0000 +++ b2/build.log 2025-04-22 09:54:46.532690027 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 21 21:49:11 -12 2025 -I: pbuilder-time-stamp: 1745315351 +I: Current time: Tue May 26 06:15:07 +14 2026 +I: pbuilder-time-stamp: 1779725707 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1510499/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 25 16:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='55e7731b5669472687d0d3dd4e7fb7a7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1510499' - PS1='# ' - PS2='> ' + INVOCATION_ID=dc096ea601834675bfb9a2cfda97ed0e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2699065 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/pbuilderrc_z4nv --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b1 --logfile b1/build.log maffilter_1.3.1+dfsg-6.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/pbuilderrc_w9vg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b2 --logfile b2/build.log maffilter_1.3.1+dfsg-6.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1510499/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -207,7 +239,7 @@ Get: 88 http://deb.debian.org/debian unstable/main amd64 texinfo-lib amd64 7.1.1-1+b1 [232 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 texinfo all 7.1.1-1 [1753 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 75.5 MB in 6s (12.3 MB/s) +Fetched 75.5 MB in 4s (21.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) @@ -591,7 +623,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/maffilter-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../maffilter_1.3.1+dfsg-6_source.changes +I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/maffilter-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../maffilter_1.3.1+dfsg-6_source.changes dpkg-buildpackage: info: source package maffilter dpkg-buildpackage: info: source version 1.3.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable @@ -662,7 +698,7 @@ dynamic libraries: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) --- Configuring done (0.4s) +-- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -674,7 +710,7 @@ -- Build files have been written to: /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -690,24 +726,24 @@ make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' +make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build +make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' -make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' -[ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -[ 50%] Generating info page -[ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -[ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o +[ 12%] Generating info page +[ 62%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o +[ 62%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o +[ 62%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o [ 62%] Compressing manpage maffilter.1 [ 75%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc && /usr/bin/makeinfo --no-split -o /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/doc/maffilter.info /build/reproducible-path/maffilter-1.3.1+dfsg/doc/maffilter.texi -cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o -MF CMakeFiles/maffilter.dir/MafFilter.cpp.o.d -o CMakeFiles/maffilter.dir/MafFilter.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp -cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/man/maffilter.1 > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man/maffilter.1.gz cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/OutputAsFeaturesMafIterator.cpp +cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/man/maffilter.1 > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/man/maffilter.1.gz +cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o -MF CMakeFiles/maffilter.dir/MafFilter.cpp.o.d -o CMakeFiles/maffilter.dir/MafFilter.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/SystemCallMafIterator.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/TreeBuildingSystemCallMafIterator.cpp make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' @@ -728,7 +764,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/maffilter-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/maffilter-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -774,12 +810,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2699065/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1510499 and its subdirectories -I: Current time: Mon Apr 21 21:52:01 -12 2025 -I: pbuilder-time-stamp: 1745315521 +I: removing directory /srv/workspace/pbuilder/2699065 and its subdirectories +I: Current time: Tue May 26 06:17:45 +14 2026 +I: pbuilder-time-stamp: 1779725865 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/maffilter_1.3.1+dfsg-6.diff: 76.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/maffilter_1.3.1+dfsg-6.diff.gz b2/build.log: 80.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 80.8% -- replaced with stdout Tue Apr 22 09:54:48 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_maffilter_unstable_amd64_1745315688 + touch /var/log/reproducible-builds/diffoscope_stamp_maffilter_unstable_amd64_1745315688 + RESULT=0 + systemd-run '--description=diffoscope on maffilter/1.3.1+dfsg-6 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_15-53159 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7 --run-session -c jenkins-reproducible-unstable-diffoscope-30fdb800-f4dc-475e-acbe-0a3f57496268 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/dbd-tmp-bACj8IU ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/maffilter_1.3.1+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/maffilter_1.3.1+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/maffilter_1.3.1+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b1/maffilter_1.3.1+dfsg-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b2/maffilter_1.3.1+dfsg-6_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_15-53159.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/maffilter_1.3.1+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/maffilter_1.3.1+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/maffilter_1.3.1+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b1/maffilter_1.3.1+dfsg-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.gBzdERS7/b2/maffilter_1.3.1+dfsg-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 225ms CPU time consumed: 221ms __ __ _ _ _ _ __ ___ __ _ / _|/ _(_) | |_ ___ _ __ | '_ ` _ \ / _` | |_| |_| | | __/ _ \ '__| | | | | | | (_| | _| _| | | || __/ | |_| |_| |_|\__,_|_| |_| |_|_|\__\___|_| Tue Apr 22 09:54:49 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 22 09:54:49 UTC 2025 I: maffilter from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-22 09:54:49] INFO: Starting at 2025-04-22 09:54:49.976893 [2025-04-22 09:54:50] INFO: Generating the pages of 1 package(s) [2025-04-22 09:54:50] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/maffilter didn't produce a buildlog, even though it has been built. [2025-04-22 09:54:50] INFO: Finished at 2025-04-22 09:54:50.414820, took: 0:00:00.437933 Tue Apr 22 09:54:50 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/maffilter.html Tue Apr 22 09:54:50 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Apr 22 09:54:50 UTC 2025 I: Submitting 12K b1/maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc https://buildinfo.debian.net/fd2e723a9039ccefca6bd60518fe95c4ef568d11/maffilter_1.3.1+dfsg-6_all Tue Apr 22 09:54:53 UTC 2025 I: Submitting 12K b2/maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc https://buildinfo.debian.net/55aedb9ee5cdc62be9237e8455b7239b057f259a/maffilter_1.3.1+dfsg-6_all Tue Apr 22 09:54:56 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 22 09:54:56 UTC 2025 I: Done submitting .buildinfo files. Tue Apr 22 09:54:56 UTC 2025 I: Removing signed maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc files: removed './b1/maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc' removed './b2/maffilter_1.3.1+dfsg-6_amd64.buildinfo.asc' 1745315696 amd64 unstable maffilter Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/maffilter_1.3.1+dfsg-6.rbuild.log: 78.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/maffilter_1.3.1+dfsg-6.rbuild.log.gz [2025-04-22 09:54:56] INFO: Starting at 2025-04-22 09:54:56.713370 [2025-04-22 09:54:56] INFO: Generating the pages of 1 package(s) [2025-04-22 09:54:57] INFO: Finished at 2025-04-22 09:54:57.129721, took: 0:00:00.416359 All cleanup done. Tue Apr 22 09:54:57 UTC 2025 - total duration: 0h 6m 5s. Tue Apr 22 09:54:57 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-F9hWDz0r, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 6min 12.606s CPU time consumed: 8.258s