Running as unit: rb-build-amd64_15-67904.service ==================================================================================== Wed Aug 6 14:47:44 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_15) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Wed Aug 6 14:47:44 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-Yn9BRxpb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Aug 6 14:47:44 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Wed Aug 6 14:47:44 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-fo7nA8' Wed Aug 6 14:47:45 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Aug 6 14:47:45 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-IzfrKN' ok, let's check if python-pyvcf is building anywhere yet… ok, python-pyvcf is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-pyvcf in trixie on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Wed Aug 6 14:48:08 UTC 2025 I: starting to build python-pyvcf/trixie/amd64 on jenkins on '2025-08-06 14:47' Wed Aug 6 14:48:08 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/67904/console.log 1754491688 amd64 trixie python-pyvcf Wed Aug 6 14:48:08 UTC 2025 I: Downloading source for trixie/python-pyvcf=0.6.8+git20170215.476169c-11 --2025-08-06 14:48:08-- http://deb.debian.org/debian/pool/main/p/python-pyvcf/python-pyvcf_0.6.8%2bgit20170215.476169c-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2377 (2.3K) [text/prs.lines.tag] Saving to: ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ 0K .. 100% 289M=0s 2025-08-06 14:48:08 (289 MB/s) - ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ saved [2377/2377] --2025-08-06 14:48:08-- http://deb.debian.org/debian/pool/main/p/python-pyvcf/python-pyvcf_0.6.8%2bgit20170215.476169c-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2377 (2.3K) [text/prs.lines.tag] Saving to: ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ 0K .. 100% 289M=0s 2025-08-06 14:48:08 (289 MB/s) - ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ saved [2377/2377] Wed Aug 6 14:48:08 UTC 2025 I: python-pyvcf_0.6.8+git20170215.476169c-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pyvcf Binary: python3-vcf, pyvcf, python-pyvcf-examples Architecture: any all Version: 0.6.8+git20170215.476169c-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/jamescasbon/PyVCF Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pyvcf Vcs-Git: https://salsa.debian.org/med-team/python-pyvcf.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest , python3-pysam Package-List: python-pyvcf-examples deb python optional arch=all python3-vcf deb python optional arch=any pyvcf deb python optional arch=all Checksums-Sha1: fd87bba83272c2a1bbdb7ab633ef90e4b12b3836 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 5680a335404c24260efb2e8488ea18f7ebd87618 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz Checksums-Sha256: df89a50c3b0faed0acffe86377ceca77053b2fc516de95e4a14623bbef42fb87 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 128b98a270b89df23931de8204327c4771d550a82b94a842d3698d486be89a48 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz Files: 257a20310260fb287a7ec4f2b5a35678 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 975be4f7a144d117a49cea17c46d0410 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEUtW9Dn1NsITjS1hl1KQc+t2yDbUFAmdF98kACgkQ1KQc+t2y DbUyCxAApjDfCXzyHbFQuojN4hIm2y77pRuuMzCl7h1hJcBD84cBMysyKHqtozqj dL05JodJSNKXIZCJK8t1s0fJendb8Sxhc5gIDgOj4tmO7E543LyXSVAoLtzgh0WA Br3BSXzB3f63+KcIzDOb3C1bY7dx/3XxgkkRMtiNsvsl23GW0enrn5CeAFpWxzoi voNwvHbqfysHnwk0YhdQ1jZytQ2NdcV3Fpo3Z04Isv5FQ8yFsUtXP9RdDgmNCX+y K+Ws1cWU8vX8+kLVLguRyAXsl+tk4jT+Q0JdG2TJgF+fha2WvdWl0tyuLUnDgKuw ptloHlvHZWRYDLJIt94xoR6ZXn7yKJn70M/zjqhu0sksm1Ssg4Zvhi51HL6Syzx+ 1dHSbmnMk8tQugxi22FGRt5+6Kv6NYZR250T0d6UDORJZL80LhyOabUQ9FEhVLLn /rLbVZmd/GIMdojsBZn4K/ZpWdx2U18NRUZHrcYLjDkcAQHli+iyN7Qb2q7kcyKg W9tP2bTRyYbnst1Dal7T/BOCXzfrhAC5BAZdQ9gtcA4urGEaWrzre8qCoGwl4bc1 yghmsjfpwXXm0Q6/Jbeom5iml7JPpIvlxfKoCIuVvfh8gFWQkLiSWnsHWVCj1fhe SVp4YPmOnItQ3jSb+WU6kue2exmyekwfpqyjAgqo5h6NkM7r3Yk= =6lNL -----END PGP SIGNATURE----- Wed Aug 6 14:48:08 UTC 2025 I: Checking whether the package is not for us Wed Aug 6 14:48:08 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed Aug 6 14:48:08 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed Aug 6 14:48:08 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Wed Aug 6 14:48:08 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-7ScvlH' ==================================================================================== Wed Aug 6 14:48:09 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 python-pyvcf trixie /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7 0.6.8+git20170215.476169c-11" as arguments. Wed Aug 6 14:48:09 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-Z5IKAOX3" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Aug 6 14:48:09 UTC 2025 I: Downloading source for trixie/python-pyvcf=0.6.8+git20170215.476169c-11 Reading package lists... NOTICE: 'python-pyvcf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pyvcf.git Please use: git clone https://salsa.debian.org/med-team/python-pyvcf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 949 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (dsc) [2377 B] Get:2 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (tar) [936 kB] Get:3 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (diff) [10.7 kB] Fetched 949 kB in 0s (54.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-pyvcf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pyvcf.git Please use: git clone https://salsa.debian.org/med-team/python-pyvcf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 949 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (dsc) [2377 B] Get:2 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (tar) [936 kB] Get:3 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (diff) [10.7 kB] Fetched 949 kB in 0s (54.6 MB/s) Download complete and in download only mode ============================================================================= Building python-pyvcf in trixie on amd64 on ionos11-amd64 now. Date: Wed Aug 6 14:48:09 UTC 2025 Date UTC: Wed Aug 6 14:48:09 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 6 02:48:09 -12 2025 I: pbuilder-time-stamp: 1754491689 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyvcf_0.6.8+git20170215.476169c-11.dsc] I: copying [./python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz] I: copying [./python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-11.dsc: no acceptable signature found dpkg-source: info: extracting python-pyvcf in python-pyvcf-0.6.8+git20170215.476169c dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-setuptools.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying quitechar.patch dpkg-source: info: applying replace-pkg-resources-with-importlib.patch dpkg-source: info: applying replace-distutils-with-setuptools.patch dpkg-source: info: applying use-raw-strings-for-regex.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1837209/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f5ddb5bf4335491ea9f1526cd3315b61' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1837209' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/pbuilderrc_wIe1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b1 --logfile b1/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1837209/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 176 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250414 [116 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.5-2 [2160 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.5-2 [5291 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.13.5-1 [1068 B] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 81 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.5-2 [504 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.13.5-1 [1068 B] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.5-2 [250 kB] Fetched 40.1 MB in 1s (54.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20185 files and directories currently installed.) 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21200 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. 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Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package dh-python. Preparing to unpack .../31-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../32-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../33-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../34-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../35-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../36-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../37-libgnutls30t64_3.8.9-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../38-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../39-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../40-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../41-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../42-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../43-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... 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Unpacking libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../50-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../51-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../52-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../53-libcurl3t64-gnutls_8.14.1-2_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.14.1-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../54-libdeflate0_1.23-2_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-2) ... Selecting previously unselected package libexpat1-dev:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-11_source.changes dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running egg_info creating PyVCF.egg-info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling vcf/cparse.pyx because it changed. [1/1] Cythonizing vcf/cparse.pyx building 'vcf.cparse' extension creating build/temp.linux-x86_64-cpython-313/vcf x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c vcf/cparse.c -o build/temp.linux-x86_64-cpython-313/vcf/cparse.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/vcf/cparse.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/vcf_melt -> build/scripts-3.13 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.13 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.13 changing mode of build/scripts-3.13/vcf_melt from 644 to 755 changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.13/vcf_sample_filter.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.2 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 2.99s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/test_vcf.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/sample_filter.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/sample_filter.py to sample_filter.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/model.py to model.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/parser.py to parser.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/prof.py to prof.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/filters.py to filters.cpython-313.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf find debian/python3-vcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf mkdir -p debian/pyvcf/usr mv debian/python3-vcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_python3 --verbose D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '--verbose'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-pyvcf-examples (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf'] D: dh_python3 dh_python3:205: processing package python3-vcf... D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.13/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-vcf details = {'requires.txt': set(), 'egg-info': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-vcf D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3 (<< 3.14)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:205: processing package pyvcf... I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_filter I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_melt I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_sample_filter D: dh_python3 fs:338: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyvcf D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-11_all.deb'. dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb'. dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb'. dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1837209 and its subdirectories I: Current time: Wed Aug 6 02:49:57 -12 2025 I: pbuilder-time-stamp: 1754491797 Wed Aug 6 14:49:57 UTC 2025 I: Signing ./b1/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo as python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc Wed Aug 6 14:49:58 UTC 2025 I: Signed ./b1/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo as ./b1/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc Wed Aug 6 14:49:58 UTC 2025 - build #1 for python-pyvcf/trixie/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Wed Aug 6 14:49:58 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Z5IKAOX3, removing. /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Aug 6 14:49 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 6 14:48 b2 -rw-r--r-- 1 jenkins jenkins 2377 Nov 26 2024 python-pyvcf_0.6.8+git20170215.476169c-11.dsc -rw------- 1 jenkins jenkins 3617 Aug 6 14:48 rbuildlog.AL7drFH /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b1: total 1256 -rw-r--r-- 1 jenkins jenkins 83454 Aug 6 14:49 build.log -rw-r--r-- 1 jenkins jenkins 945160 Aug 6 14:49 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb -rw-r--r-- 1 jenkins jenkins 10704 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2377 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11.dsc -rw-r--r-- 1 jenkins jenkins 8000 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8882 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2810 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes -rw-r--r-- 1 jenkins jenkins 1827 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11_source.changes -rw-r--r-- 1 jenkins jenkins 136192 Aug 6 14:49 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 53360 Aug 6 14:49 python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 11468 Aug 6 14:49 pyvcf_0.6.8+git20170215.476169c-11_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b2: total 0 Wed Aug 6 14:49:58 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 6 02:48:09 -12 2025 I: pbuilder-time-stamp: 1754491689 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyvcf_0.6.8+git20170215.476169c-11.dsc] I: copying [./python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz] I: copying [./python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-11.dsc: no acceptable signature found dpkg-source: info: extracting python-pyvcf in python-pyvcf-0.6.8+git20170215.476169c dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-setuptools.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying quitechar.patch dpkg-source: info: applying replace-pkg-resources-with-importlib.patch dpkg-source: info: applying replace-distutils-with-setuptools.patch dpkg-source: info: applying use-raw-strings-for-regex.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1837209/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f5ddb5bf4335491ea9f1526cd3315b61' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1837209' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/pbuilderrc_wIe1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b1 --logfile b1/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1837209/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 176 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250414 [116 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.5-2 [2160 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.5-2 [5291 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.13.5-1 [1068 B] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 81 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.5-2 [504 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.13.5-1 [1068 B] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.5-2 [250 kB] Fetched 40.1 MB in 1s (54.3 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Unpacking libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../50-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../51-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../52-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../53-libcurl3t64-gnutls_8.14.1-2_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.14.1-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../54-libdeflate0_1.23-2_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-2) ... Selecting previously unselected package libexpat1-dev:amd64. 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Selecting previously unselected package libpython3.13:amd64. Preparing to unpack .../61-libpython3.13_3.13.5-2_amd64.deb ... Unpacking libpython3.13:amd64 (3.13.5-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../62-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.13-dev:amd64. Preparing to unpack .../63-libpython3.13-dev_3.13.5-2_amd64.deb ... Unpacking libpython3.13-dev:amd64 (3.13.5-2) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../64-libpython3-dev_3.13.5-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.13.5-1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../65-libpython3-all-dev_3.13.5-1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.13.5-1) ... Selecting previously unselected package python3-all. 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Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Aug 6 14:49:22 UTC 2025. Universal Time is now: Wed Aug 6 14:49:22 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libpython3.13:amd64 (3.13.5-2) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up python3.13 (3.13.5-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-packaging (25.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libpython3.13-dev:amd64 (3.13.5-2) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:amd64 (3.13.5-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.5-2) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-2) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.24.2) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:amd64 (3.13.5-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.5-1) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.5-1) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-11_source.changes dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running egg_info creating PyVCF.egg-info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling vcf/cparse.pyx because it changed. [1/1] Cythonizing vcf/cparse.pyx building 'vcf.cparse' extension creating build/temp.linux-x86_64-cpython-313/vcf x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c vcf/cparse.c -o build/temp.linux-x86_64-cpython-313/vcf/cparse.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/vcf/cparse.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/vcf_melt -> build/scripts-3.13 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.13 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.13 changing mode of build/scripts-3.13/vcf_melt from 644 to 755 changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.13/vcf_sample_filter.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.2 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 2.99s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/test_vcf.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/sample_filter.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/sample_filter.py to sample_filter.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/model.py to model.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/parser.py to parser.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/prof.py to prof.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/filters.py to filters.cpython-313.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf find debian/python3-vcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf mkdir -p debian/pyvcf/usr mv debian/python3-vcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_python3 --verbose D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '--verbose'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-pyvcf-examples (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf'] D: dh_python3 dh_python3:205: processing package python3-vcf... D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.13/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-vcf details = {'requires.txt': set(), 'egg-info': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-vcf D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3 (<< 3.14)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:205: processing package pyvcf... I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_filter I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_melt I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_sample_filter D: dh_python3 fs:338: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyvcf D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-11_all.deb'. dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb'. dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb'. dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1837209 and its subdirectories I: Current time: Wed Aug 6 02:49:57 -12 2025 I: pbuilder-time-stamp: 1754491797 Wed Aug 6 14:49:58 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed Aug 6 14:49:58 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed Aug 6 14:49:58 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Aug 6 14:49:58 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-rgQlk4' ==================================================================================== Tue Sep 8 21:12:59 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 python-pyvcf trixie /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7 0.6.8+git20170215.476169c-11" as arguments. Tue Sep 8 21:12:59 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-7CbJQnUV" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Sep 8 21:12:59 UTC 2026 I: Downloading source for trixie/python-pyvcf=0.6.8+git20170215.476169c-11 Reading package lists... NOTICE: 'python-pyvcf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pyvcf.git Please use: git clone https://salsa.debian.org/med-team/python-pyvcf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 949 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (dsc) [2377 B] Get:2 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (tar) [936 kB] Get:3 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (diff) [10.7 kB] Fetched 949 kB in 0s (46.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-pyvcf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pyvcf.git Please use: git clone https://salsa.debian.org/med-team/python-pyvcf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 949 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (dsc) [2377 B] Get:2 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (tar) [936 kB] Get:3 http://deb.debian.org/debian trixie/main python-pyvcf 0.6.8+git20170215.476169c-11 (diff) [10.7 kB] Fetched 949 kB in 0s (46.6 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-pyvcf in trixie on amd64 on ionos15-amd64 now. Date: Tue Sep 8 21:12:59 UTC 2026 Date UTC: Tue Sep 8 21:12:59 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/pbuilderrc_aQ84 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-pyvcf = debian-installer -o python-pyvcf = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-pyvcf = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/pbuilderrc_aQ84 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b2 --logfile b2/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 9 11:13:00 +14 2026 I: pbuilder-time-stamp: 1788901980 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyvcf_0.6.8+git20170215.476169c-11.dsc] I: copying [./python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz] I: copying [./python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-11.dsc: no acceptable signature found dpkg-source: info: extracting python-pyvcf in python-pyvcf-0.6.8+git20170215.476169c dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-setuptools.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying quitechar.patch dpkg-source: info: applying replace-pkg-resources-with-importlib.patch dpkg-source: info: applying replace-distutils-with-setuptools.patch dpkg-source: info: applying use-raw-strings-for-regex.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 8 21:13 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=42063c319e0146cf8f0ca1ab1fbeabcf LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2526020 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/pbuilderrc_aQ84 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b2 --logfile b2/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 176 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250414 [116 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.5-2 [2160 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.5-2 [5291 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.13.5-1 [1068 B] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 81 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.5-2 [504 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.13.5-1 [1068 B] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.5-2 [250 kB] Fetched 40.1 MB in 1s (45.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20185 files and directories currently installed.) 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libpython3.13:amd64 (3.13.5-2) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up python3.13 (3.13.5-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-packaging (25.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libpython3.13-dev:amd64 (3.13.5-2) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:amd64 (3.13.5-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.5-2) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-2) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.24.2) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:amd64 (3.13.5-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.5-1) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.5-1) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-11_source.changes dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running egg_info creating PyVCF.egg-info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling vcf/cparse.pyx because it changed. [1/1] Cythonizing vcf/cparse.pyx building 'vcf.cparse' extension creating build/temp.linux-x86_64-cpython-313/vcf x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c vcf/cparse.c -o build/temp.linux-x86_64-cpython-313/vcf/cparse.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/vcf/cparse.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/vcf_melt -> build/scripts-3.13 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.13 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.13 changing mode of build/scripts-3.13/vcf_melt from 644 to 755 changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.13/vcf_sample_filter.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.2 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 2.36s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/sample_filter.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/test_vcf.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/sample_filter.py to sample_filter.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/prof.py to prof.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/parser.py to parser.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/model.py to model.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/filters.py to filters.cpython-313.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf find debian/python3-vcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf mkdir -p debian/pyvcf/usr mv debian/python3-vcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_python3 --verbose D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '--verbose'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-pyvcf-examples (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf'] D: dh_python3 dh_python3:205: processing package python3-vcf... D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.13/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-vcf details = {'requires.txt': set(), 'egg-info': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-vcf D: dh_python3 depends:253: D={'python3:any', 'python3 (<< 3.14)', 'python3 (>= 3.13~)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:205: processing package pyvcf... I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_melt I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_filter I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_sample_filter D: dh_python3 fs:338: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyvcf D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb'. dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb'. dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-11_all.deb'. dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2526020 and its subdirectories I: Current time: Wed Sep 9 11:14:33 +14 2026 I: pbuilder-time-stamp: 1788902073 + false + set +x Tue Sep 8 21:14:33 UTC 2026 I: Signing ./b2/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo as python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc Tue Sep 8 21:14:33 UTC 2026 I: Signed ./b2/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo as ./b2/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc Tue Sep 8 21:14:33 UTC 2026 - build #2 for python-pyvcf/trixie/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Tue Sep 8 21:14:33 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-7CbJQnUV, removing. /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7: total 104 drwxr-xr-x 2 jenkins jenkins 4096 Aug 6 14:49 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 6 14:51 b2 -rw-r--r-- 1 jenkins jenkins 2377 Nov 26 2024 python-pyvcf_0.6.8+git20170215.476169c-11.dsc -rw------- 1 jenkins jenkins 87360 Aug 6 14:49 rbuildlog.AL7drFH /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b1: total 1272 -rw-r--r-- 1 jenkins jenkins 83454 Aug 6 14:49 build.log -rw-r--r-- 1 jenkins jenkins 945160 Aug 6 14:49 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb -rw-r--r-- 1 jenkins jenkins 10704 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2377 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11.dsc -rw-r--r-- 1 jenkins jenkins 8000 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8882 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2810 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes -rw-r--r-- 1 jenkins jenkins 1827 Aug 6 14:49 python-pyvcf_0.6.8+git20170215.476169c-11_source.changes -rw-r--r-- 1 jenkins jenkins 136192 Aug 6 14:49 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 53360 Aug 6 14:49 python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 11468 Aug 6 14:49 pyvcf_0.6.8+git20170215.476169c-11_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b2: total 1256 -rw-r--r-- 1 jenkins jenkins 85399 Aug 6 14:51 build.log -rw-r--r-- 1 jenkins jenkins 945160 Aug 6 14:51 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb -rw-r--r-- 1 jenkins jenkins 10704 Aug 6 14:51 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2377 Aug 6 14:51 python-pyvcf_0.6.8+git20170215.476169c-11.dsc -rw-r--r-- 1 jenkins jenkins 8013 Aug 6 14:51 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8895 Aug 6 14:51 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2810 Aug 6 14:51 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes -rw-r--r-- 1 jenkins jenkins 1827 Aug 6 14:51 python-pyvcf_0.6.8+git20170215.476169c-11_source.changes -rw-r--r-- 1 jenkins jenkins 136192 Aug 6 14:51 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 53360 Aug 6 14:51 python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 11468 Aug 6 14:51 pyvcf_0.6.8+git20170215.476169c-11_all.deb Wed Aug 6 14:51:34 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed Aug 6 14:51:34 UTC 2025 I: python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes: Format: 1.8 Date: Tue, 26 Nov 2024 21:49:45 +0530 Source: python-pyvcf Binary: python-pyvcf-examples python3-vcf python3-vcf-dbgsym pyvcf Architecture: all amd64 Version: 0.6.8+git20170215.476169c-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Ananthu C V Description: python-pyvcf-examples - Example data for Variant Call Format (VCF) parser for Python python3-vcf - Variant Call Format (VCF) parser for Python 3 pyvcf - helper scripts for Variant Call Format (VCF) parser Closes: 1079359 1083698 Changes: python-pyvcf (0.6.8+git20170215.476169c-11) unstable; urgency=medium . * Team upload. * Drop dependency on python3-pkg-resources (Closes: #1083698) * Fix patch header format * Use setuptools instead of deprecated distutils * Use raw strings to prevent invalid escape sequences in regex (Closes: 1079359) * Use execute_after target instead of overriding dh_install * Bump standards version to 4.7.0 (no changes needed) Checksums-Sha1: cf46b813f3bf375d0c44def30b6845fe88d599ba 945160 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb 3ec7b2fc43c7c3bd10b16074ae182fba686dcd31 8000 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo 2b5728d86e4a0b84c8f88e023af8f9a9617778a7 136192 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb 03a7ce69e274314fe2d27639a384e05ffe1f6171 53360 python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb 611b81db9b4545ae3de143786c3cb608112fd892 11468 pyvcf_0.6.8+git20170215.476169c-11_all.deb Checksums-Sha256: 32a3d99d82109541dc3d06bb38d70ed8c9bb442cdfb5803196c5d54a62f383b4 945160 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb 9a52161febe83782a986c2e4127dd7fdf77a4a63c7af6f070ab1369d0df26ee8 8000 python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo 97e392b48ee3307933da3721ae3c2008855b9ba83e6add82d77da02535f55ae3 136192 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb 19a8ff029e6521b58a87841c81506fc315e1729aff9d5b9b8be45355ff87e5b6 53360 python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb 27e908b06a33edb2f34b1ec33b7b7269762c175a60ff24ec3c26e31302bc510f 11468 pyvcf_0.6.8+git20170215.476169c-11_all.deb Files: fa5d6b8b108f02e304168b11669f483d 945160 python optional python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb 22e5d6e14e12ced6c9dd5f828cb84adf 8000 python optional python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo 0580dc0d6b84dfc85b6bb6a41c4f839a 136192 debug optional python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb 7c7b84299d34fb15bc0470694307277e 53360 python optional python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb e9169ad022c25a452adf6f34a14c3d4a 11468 python optional pyvcf_0.6.8+git20170215.476169c-11_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-08-06 14:49:58.435322501 +0000 +++ b2/build.log 2025-08-06 14:51:34.183451226 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Aug 6 02:48:09 -12 2025 -I: pbuilder-time-stamp: 1754491689 +I: Current time: Wed Sep 9 11:13:00 +14 2026 +I: pbuilder-time-stamp: 1788901980 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying use-raw-strings-for-regex.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1837209/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 8 21:13 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f5ddb5bf4335491ea9f1526cd3315b61' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1837209' - PS1='# ' - PS2='> ' + INVOCATION_ID=42063c319e0146cf8f0ca1ab1fbeabcf + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2526020 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/pbuilderrc_wIe1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b1 --logfile b1/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/pbuilderrc_aQ84 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b2 --logfile b2/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1837209/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -221,7 +253,7 @@ Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.5-2 [250 kB] -Fetched 40.1 MB in 1s (54.3 MB/s) +Fetched 40.1 MB in 1s (45.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) @@ -553,8 +585,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Aug 6 14:49:22 UTC 2025. -Universal Time is now: Wed Aug 6 14:49:22 UTC 2025. +Local time is now: Tue Sep 8 21:13:55 UTC 2026. +Universal Time is now: Tue Sep 8 21:13:55 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -644,7 +676,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-11_source.changes +I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-11_source.changes dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-11 dpkg-buildpackage: info: source distribution unstable @@ -721,16 +757,16 @@ running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf -copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf -copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf -copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf +copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf +copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf +copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test -copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test +copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running egg_info creating PyVCF.egg-info writing PyVCF.egg-info/PKG-INFO @@ -817,7 +853,7 @@ vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] -======================== 100 passed, 4 skipped in 2.99s ======================== +======================== 100 passed, 4 skipped in 2.36s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -869,89 +905,89 @@ running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf +creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/sample_filter.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/test_vcf.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/test_vcf.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test -creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/sample_filter.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf -copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf -byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__init__.py to __init__.cpython-313.pyc +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf +copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/sample_filter.py to sample_filter.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/model.py to model.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/parser.py to parser.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/prof.py to prof.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/utils.py to utils.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/parser.py to parser.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/model.py to model.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/filters.py to filters.cpython-313.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin +copying build/scripts-3.13/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin -copying build/scripts-3.13/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin +changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 -changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' # move testdata to separate dir @@ -982,10 +1018,10 @@ D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.13/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-vcf details = {'requires.txt': set(), 'egg-info': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-vcf -D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3 (<< 3.14)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3:any', 'python3 (<< 3.14)', 'python3 (>= 3.13~)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:205: processing package pyvcf... -I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_filter I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_melt +I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_filter I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_sample_filter D: dh_python3 fs:338: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyvcf @@ -1006,9 +1042,9 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-11_all.deb'. -dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb'. dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_amd64.deb'. +dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-11_amd64.deb'. +dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-11_all.deb'. dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes @@ -1017,12 +1053,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2526020/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1837209 and its subdirectories -I: Current time: Wed Aug 6 02:49:57 -12 2025 -I: pbuilder-time-stamp: 1754491797 +I: removing directory /srv/workspace/pbuilder/2526020 and its subdirectories +I: Current time: Wed Sep 9 11:14:33 +14 2026 +I: pbuilder-time-stamp: 1788902073 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11.diff: 88.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11.diff.gz b2/build.log: 84.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 85.4% -- replaced with stdout Wed Aug 6 14:51:35 UTC 2025 I: diffoscope 303 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-pyvcf_trixie_amd64_1754491895 + touch /var/log/reproducible-builds/diffoscope_stamp_python-pyvcf_trixie_amd64_1754491895 + RESULT=0 + systemd-run '--description=diffoscope on python-pyvcf/0.6.8+git20170215.476169c-11 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_15-67904 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7 --run-session -c jenkins-reproducible-trixie-diffoscope-913d75fc-b0ec-4493-abe8-25a65cfdf754 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/dbd-tmp-hTpujYf ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b1/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b2/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_15-67904.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b1/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.X4liy2p7/b2/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 163ms CPU time consumed: 165ms _ _ __ _ __ _ _| |_| |__ ___ _ __ _ __ _ ___ _____ / _| | '_ \| | | | __| '_ \ / _ \| '_ \ _____| '_ \| | | \ \ / / __| |_ | |_) | |_| | |_| | | | (_) | | | |_____| |_) | |_| |\ V / (__| _| | .__/ \__, |\__|_| |_|\___/|_| |_| | .__/ \__, | \_/ \___|_| |_| |___/ |_| |___/ Wed Aug 6 14:51:35 UTC 2025 I: diffoscope 303 found no differences in the changes files, and a .buildinfo file also exists. Wed Aug 6 14:51:35 UTC 2025 I: python-pyvcf from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-08-06 14:51:36] INFO: Starting at 2025-08-06 14:51:36.139412 [2025-08-06 14:51:36] INFO: Generating the pages of 1 package(s) [2025-08-06 14:51:36] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/python-pyvcf didn't produce a buildlog, even though it has been built. [2025-08-06 14:51:36] INFO: Finished at 2025-08-06 14:51:36.397068, took: 0:00:00.257662 Wed Aug 6 14:51:36 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/python-pyvcf.html Wed Aug 6 14:51:36 UTC 2025 I: Removing signed python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc files: removed './b1/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc' removed './b2/python-pyvcf_0.6.8+git20170215.476169c-11_amd64.buildinfo.asc' 1754491896 amd64 trixie python-pyvcf Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11.rbuild.log: 83.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/python-pyvcf_0.6.8+git20170215.476169c-11.rbuild.log.gz [2025-08-06 14:51:36] INFO: Starting at 2025-08-06 14:51:36.664769 [2025-08-06 14:51:36] INFO: Generating the pages of 1 package(s) [2025-08-06 14:51:36] INFO: Finished at 2025-08-06 14:51:36.910070, took: 0:00:00.245312 All cleanup done. Wed Aug 6 14:51:36 UTC 2025 - total duration: 0h 3m 51s. Wed Aug 6 14:51:36 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Yn9BRxpb, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 52.156s CPU time consumed: 4.638s