Running as unit: rb-build-amd64_15-77283.service; invocation ID: 6cff6703100d49be9cef3e8c42709397 ==================================================================================== Fri Oct 31 12:24:50 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_15) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Fri Oct 31 12:24:50 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-0u7VnpIj" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 12:24:50 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 12:24:50 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-8kJahv' Fri Oct 31 12:24:50 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 12:24:50 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-JQtXMm' ok, let's check if indelible is building anywhere yet… ok, indelible is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of indelible in unstable on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Fri Oct 31 12:25:02 UTC 2025 I: starting to build indelible/unstable/amd64 on jenkins on '2025-10-31 12:24' Fri Oct 31 12:25:02 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/77283/console.log 1761913502 amd64 unstable indelible Fri Oct 31 12:25:02 UTC 2025 I: Downloading source for unstable/indelible=1.03-6 --2025-10-31 12:25:02-- http://deb.debian.org/debian/pool/main/i/indelible/indelible_1.03-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2145 (2.1K) [text/prs.lines.tag] Saving to: ‘indelible_1.03-6.dsc’ 0K .. 100% 268M=0s 2025-10-31 12:25:02 (268 MB/s) - ‘indelible_1.03-6.dsc’ saved [2145/2145] --2025-10-31 12:25:02-- http://deb.debian.org/debian/pool/main/i/indelible/indelible_1.03-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2145 (2.1K) [text/prs.lines.tag] Saving to: ‘indelible_1.03-6.dsc’ 0K .. 100% 268M=0s 2025-10-31 12:25:02 (268 MB/s) - ‘indelible_1.03-6.dsc’ saved [2145/2145] Fri Oct 31 12:25:02 UTC 2025 I: indelible_1.03-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: indelible Binary: indelible Architecture: any Version: 1.03-6 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl , Étienne Mollier Homepage: http://abacus.gene.ucl.ac.uk/software/indelible/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/indelible Vcs-Git: https://salsa.debian.org/med-team/indelible.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: indelible deb science optional arch=any Checksums-Sha1: 187d199eccb29718e76fc5992092f86214f4c6e4 196596 indelible_1.03.orig.tar.xz 2dd46f9f745dc4dd91f89de0718f396bf58d13a2 53144 indelible_1.03-6.debian.tar.xz Checksums-Sha256: 60ed2a8fd50608a56a92f708a117194d4a6d23a53e55ecc27bf76e5fdf470c80 196596 indelible_1.03.orig.tar.xz cce6a88c887930827ac2fc70ea1fb5d64066c21a579a8eec11f540db346dca18 53144 indelible_1.03-6.debian.tar.xz Files: 4a06db04f2acab8169c5b3b821759a35 196596 indelible_1.03.orig.tar.xz 5cac75afb480d511f942aefddd5c457f 53144 indelible_1.03-6.debian.tar.xz Dgit: d78219e7ebddf0c93171ba59b5ac666cf36423c8 debian archive/debian/1.03-6 https://git.dgit.debian.org/indelible -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWQXm8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrxzBAAslRf4ylggCdvdZBOwhlltuKY7LKA 08yqm94l6jXNpmWP5X9h6l13k5CO0ZpXkRCGmdxPtIAcTqiyYgO8bkcVKet0TzSW Hc0AKK1mGyDMpz3OvlA48hlJ7RB/6YwCCOOBEAJy2xd3adx+A0ZxydVXwR8AO85q 5C36parbsnEd4tPNHQv81rrjyUnVSyY6JV6kkI+CvcgsJm5DMltcJ4XEPl0SJSNg +g6fjB6DXxduSb/EZui5KlN9PMuEmo3u/9dpnU9WTqhvpX7BESECLQBqnVZHXeSi wcNnox5e9WIerJTOpAyNJ/2OiyAoZk/OL6/Oj07n7rGKZlfx6POZsdwMFTRdFY3A JgWsKN0+ywkC/ruRIjr+WpXy0MTF5y32LIA4XPBgO0oeXIJi2qZlQS22WDpqfB9r GZA7iCFqzAbM4xeOuVrkFD+DtfvhHcF0BEqg4W6D1s9bql7AKyvSIFoHuxd7aHIT Lf18f4oaY8RmccpIZaxXep9slO0ecNc30bjABffu9YvYPF+JwFYdy+Abxin8nVvk dQwAS1lBd4XsvmT/Fu4I25Vz+HhV5P74GRle4bIzUFEbQmEWODJwIzdFCAnSc2KC P6MtJ6fO5nV1m+GfLuqCFl9XR9WU7b45HdpLb5+k8NYPsdZ2iL7bY0NL+w8H4STK tX7QlS9sdbNqu9U= =jb7z -----END PGP SIGNATURE----- Fri Oct 31 12:25:02 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 12:25:02 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri Oct 31 12:25:02 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri Oct 31 12:25:02 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 12:25:02 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-1LcYG0' ==================================================================================== Fri Oct 31 12:25:02 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 indelible unstable /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP 1.03-6" as arguments. Fri Oct 31 12:25:02 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-34y9TDcr" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 12:25:02 UTC 2025 I: Downloading source for unstable/indelible=1.03-6 Reading package lists... NOTICE: 'indelible' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/indelible.git Please use: git clone https://salsa.debian.org/med-team/indelible.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 252 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main indelible 1.03-6 (dsc) [2145 B] Get:2 http://deb.debian.org/debian unstable/main indelible 1.03-6 (tar) [197 kB] Get:3 http://deb.debian.org/debian unstable/main indelible 1.03-6 (diff) [53.1 kB] Fetched 252 kB in 0s (8893 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'indelible' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/indelible.git Please use: git clone https://salsa.debian.org/med-team/indelible.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 252 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main indelible 1.03-6 (dsc) [2145 B] Get:2 http://deb.debian.org/debian unstable/main indelible 1.03-6 (tar) [197 kB] Get:3 http://deb.debian.org/debian unstable/main indelible 1.03-6 (diff) [53.1 kB] Fetched 252 kB in 0s (8893 kB/s) Download complete and in download only mode ============================================================================= Building indelible in unstable on amd64 on ionos11-amd64 now. Date: Fri Oct 31 12:25:03 UTC 2025 Date UTC: Fri Oct 31 12:25:03 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 00:25:03 -12 2025 I: pbuilder-time-stamp: 1761913503 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [indelible_1.03-6.dsc] I: copying [./indelible_1.03.orig.tar.xz] I: copying [./indelible_1.03-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./indelible_1.03-6.dsc: no acceptable signature found dpkg-source: info: extracting indelible in indelible-1.03 dpkg-source: info: unpacking indelible_1.03.orig.tar.xz dpkg-source: info: unpacking indelible_1.03-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-added-headers-for-getpid-2.patch dpkg-source: info: applying 0002-added-documentation-index-page.patch dpkg-source: info: applying 0003-added-manpage.patch dpkg-source: info: applying 0004-added-auto-tools-build-system.patch dpkg-source: info: applying 0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch dpkg-source: info: applying 0006-spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3873885/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='020fbf6cea46465188f1290a514084ad' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3873885' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/pbuilderrc_F3Ev --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b1 --logfile b1/build.log indelible_1.03-6.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3873885/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Fetched 11.2 MB in 0s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.194-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.194-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.15.1+dfsg-0.3_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.1+dfsg-0.3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-0.3) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/indelible-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../indelible_1.03-6_source.changes dpkg-buildpackage: info: source package indelible dpkg-buildpackage: info: source version 1.03-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:4: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am:2: warning: source file 'src/indelible.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibility. Makefile.am:8: warning: source file 'src/control.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/models.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/paml.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/randoms.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for cos in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for int32_t... yes checking for uint32_t... yes checking for _Bool... no checking for stdbool.h that conforms to C99 or later... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for limits.h... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build make -j40 make[1]: Entering directory '/build/reproducible-path/indelible-1.03' g++ -DPACKAGE_NAME=\"indelible\" -DPACKAGE_TARNAME=\"indelible\" -DPACKAGE_VERSION=\"1.03\" -DPACKAGE_STRING=\"indelible\ 1.03\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"indelible\" -DVERSION=\"1.03\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_LIMITS_H=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -I. -Isrc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o indelible-indelible.o `test -f 'src/indelible.cpp' || echo './'`src/indelible.cpp In file included from src/randoms.cpp:31, from src/paml.cpp:41, from src/models.cpp:35, from src/control.cpp:38, from src/indelible.cpp:135: src/MersenneTwister.h: In member function 'MTRand::uint32 MTRand::randInt()': src/MersenneTwister.h:187:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register uint32 s1; | ^~ src/MersenneTwister.h: In member function 'void MTRand::seed(uint32*, uint32)': src/MersenneTwister.h:232:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 232 | register int i = 1; | ^ src/MersenneTwister.h:233:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 233 | register uint32 j = 0; | ^ src/MersenneTwister.h:234:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 234 | register int k = ( N > seedLength ? N : seedLength ); | ^ src/MersenneTwister.h: In member function 'void MTRand::initialize(uint32)': src/MersenneTwister.h:273:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 273 | register uint32 *s = state; | ^ src/MersenneTwister.h:274:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 274 | register uint32 *r = state; | ^ src/MersenneTwister.h:275:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 275 | register int i = 1; | ^ src/MersenneTwister.h: In member function 'void MTRand::reload()': src/MersenneTwister.h:289:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 289 | register uint32 *p = state; | ^ src/MersenneTwister.h:290:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 290 | register int i; | ^ src/MersenneTwister.h: In member function 'void MTRand::save(uint32*) const': src/MersenneTwister.h:395:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 395 | register uint32 *sa = saveArray; | ^~ src/MersenneTwister.h:396:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 396 | register const uint32 *s = state; | ^ src/MersenneTwister.h:397:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 397 | register int i = N; | ^ src/MersenneTwister.h: In member function 'void MTRand::load(uint32*)': src/MersenneTwister.h:405:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 405 | register uint32 *s = state; | ^ src/MersenneTwister.h:406:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 406 | register uint32 *la = loadArray; | ^~ src/MersenneTwister.h:407:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 407 | register int i = N; | ^ src/MersenneTwister.h: In function 'std::ostream& operator<<(std::ostream&, const MTRand&)': src/MersenneTwister.h:416:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 416 | register const MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:417:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 417 | register int i = mtrand.N; | ^ src/MersenneTwister.h: In function 'std::istream& operator>>(std::istream&, MTRand&)': src/MersenneTwister.h:425:34: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:426:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register int i = mtrand.N; | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o indelible indelible-indelible.o -lm make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/indelible/ make -j40 install DESTDIR=/build/reproducible-path/indelible-1.03/debian/indelible AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/indelible-1.03' make[2]: Entering directory '/build/reproducible-path/indelible-1.03' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/install -c indelible '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/install -c -m 644 indelible.1 '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/install -c -m 644 help/example_files/AMINOACID.shtml help/example_files/basicaminoacid.shtml help/example_files/basiccodon.shtml help/example_files/basicnucleotide.shtml help/example_files/basic.shtml help/example_files/branch2.shtml help/example_files/branch.shtml help/example_files/codon_RATES.txt help/example_files/CODON.shtml help/example_files/CODONsites.shtml help/example_files/indels.shtml help/example_files/multi-partitions.shtml help/example_files/mylengthmodel.txt help/example_files/nucleotide-branch.shtml help/example_files/nucleotide_RATES.txt help/example_files/NUCLEOTIDE.shtml help/example_files/random_branch_length_trees.JPG help/example_files/rates.shtml help/example_files/settings.shtml help/example_files/sitebranch.shtml help/example_files/trees.shtml help/example_files/trees.txt help/example_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/install -c -m 644 help/manual_files/branches.shtml help/manual_files/codon_RATES.txt help/manual_files/evolve.shtml help/manual_files/model.shtml help/manual_files/mylengthmodel.txt help/manual_files/nucleotide_RATES.txt help/manual_files/partitions.shtml help/manual_files/random_branch_length_trees.JPG help/manual_files/settings.shtml help/manual_files/symQmatrix.gif help/manual_files/tree.shtml help/manual_files/trees.txt help/manual_files/type.shtml help/manual_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' /usr/bin/install -c -m 644 help/index.html help/examples.shtml help/manual.shtml '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' make[2]: Leaving directory '/build/reproducible-path/indelible-1.03' make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'indelible' in '../indelible_1.03-6_amd64.deb'. dpkg-deb: building package 'indelible-dbgsym' in '../indelible-dbgsym_1.03-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../indelible_1.03-6_amd64.buildinfo dpkg-genchanges --build=binary -O../indelible_1.03-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3873885 and its subdirectories I: Current time: Fri Oct 31 00:26:19 -12 2025 I: pbuilder-time-stamp: 1761913579 Fri Oct 31 12:26:19 UTC 2025 I: Signing ./b1/indelible_1.03-6_amd64.buildinfo as indelible_1.03-6_amd64.buildinfo.asc Fri Oct 31 12:26:19 UTC 2025 I: Signed ./b1/indelible_1.03-6_amd64.buildinfo as ./b1/indelible_1.03-6_amd64.buildinfo.asc Fri Oct 31 12:26:19 UTC 2025 - build #1 for indelible/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 12:26:19 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-34y9TDcr, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 12:26 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 12:25 b2 -rw-rw-r-- 1 jenkins jenkins 2145 Dec 30 2023 indelible_1.03-6.dsc -rw------- 1 jenkins jenkins 3256 Oct 31 12:25 rbuildlog.MzzicOj /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b1: total 2856 -rw-r--r-- 1 jenkins jenkins 30373 Oct 31 12:26 build.log -rw-r--r-- 1 jenkins jenkins 2399920 Oct 31 12:26 indelible-dbgsym_1.03-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 53144 Oct 31 12:26 indelible_1.03-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2145 Oct 31 12:26 indelible_1.03-6.dsc -rw-r--r-- 1 jenkins jenkins 4774 Oct 31 12:26 indelible_1.03-6_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5656 Oct 31 12:26 indelible_1.03-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1471 Oct 31 12:26 indelible_1.03-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 409308 Oct 31 12:26 indelible_1.03-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1317 Oct 31 12:26 indelible_1.03-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b2: total 0 Fri Oct 31 12:26:20 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 00:25:03 -12 2025 I: pbuilder-time-stamp: 1761913503 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [indelible_1.03-6.dsc] I: copying [./indelible_1.03.orig.tar.xz] I: copying [./indelible_1.03-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./indelible_1.03-6.dsc: no acceptable signature found dpkg-source: info: extracting indelible in indelible-1.03 dpkg-source: info: unpacking indelible_1.03.orig.tar.xz dpkg-source: info: unpacking indelible_1.03-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-added-headers-for-getpid-2.patch dpkg-source: info: applying 0002-added-documentation-index-page.patch dpkg-source: info: applying 0003-added-manpage.patch dpkg-source: info: applying 0004-added-auto-tools-build-system.patch dpkg-source: info: applying 0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch dpkg-source: info: applying 0006-spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3873885/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='020fbf6cea46465188f1290a514084ad' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3873885' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/pbuilderrc_F3Ev --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b1 --logfile b1/build.log indelible_1.03-6.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3873885/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Fetched 11.2 MB in 0s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/indelible-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../indelible_1.03-6_source.changes dpkg-buildpackage: info: source package indelible dpkg-buildpackage: info: source version 1.03-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:4: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am:2: warning: source file 'src/indelible.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibility. Makefile.am:8: warning: source file 'src/control.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/models.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/paml.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/randoms.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for cos in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for int32_t... yes checking for uint32_t... yes checking for _Bool... no checking for stdbool.h that conforms to C99 or later... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for limits.h... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build make -j40 make[1]: Entering directory '/build/reproducible-path/indelible-1.03' g++ -DPACKAGE_NAME=\"indelible\" -DPACKAGE_TARNAME=\"indelible\" -DPACKAGE_VERSION=\"1.03\" -DPACKAGE_STRING=\"indelible\ 1.03\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"indelible\" -DVERSION=\"1.03\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_LIMITS_H=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -I. -Isrc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o indelible-indelible.o `test -f 'src/indelible.cpp' || echo './'`src/indelible.cpp In file included from src/randoms.cpp:31, from src/paml.cpp:41, from src/models.cpp:35, from src/control.cpp:38, from src/indelible.cpp:135: src/MersenneTwister.h: In member function 'MTRand::uint32 MTRand::randInt()': src/MersenneTwister.h:187:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register uint32 s1; | ^~ src/MersenneTwister.h: In member function 'void MTRand::seed(uint32*, uint32)': src/MersenneTwister.h:232:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 232 | register int i = 1; | ^ src/MersenneTwister.h:233:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 233 | register uint32 j = 0; | ^ src/MersenneTwister.h:234:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 234 | register int k = ( N > seedLength ? N : seedLength ); | ^ src/MersenneTwister.h: In member function 'void MTRand::initialize(uint32)': src/MersenneTwister.h:273:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 273 | register uint32 *s = state; | ^ src/MersenneTwister.h:274:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 274 | register uint32 *r = state; | ^ src/MersenneTwister.h:275:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 275 | register int i = 1; | ^ src/MersenneTwister.h: In member function 'void MTRand::reload()': src/MersenneTwister.h:289:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 289 | register uint32 *p = state; | ^ src/MersenneTwister.h:290:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 290 | register int i; | ^ src/MersenneTwister.h: In member function 'void MTRand::save(uint32*) const': src/MersenneTwister.h:395:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 395 | register uint32 *sa = saveArray; | ^~ src/MersenneTwister.h:396:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 396 | register const uint32 *s = state; | ^ src/MersenneTwister.h:397:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 397 | register int i = N; | ^ src/MersenneTwister.h: In member function 'void MTRand::load(uint32*)': src/MersenneTwister.h:405:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 405 | register uint32 *s = state; | ^ src/MersenneTwister.h:406:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 406 | register uint32 *la = loadArray; | ^~ src/MersenneTwister.h:407:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 407 | register int i = N; | ^ src/MersenneTwister.h: In function 'std::ostream& operator<<(std::ostream&, const MTRand&)': src/MersenneTwister.h:416:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 416 | register const MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:417:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 417 | register int i = mtrand.N; | ^ src/MersenneTwister.h: In function 'std::istream& operator>>(std::istream&, MTRand&)': src/MersenneTwister.h:425:34: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:426:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register int i = mtrand.N; | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o indelible indelible-indelible.o -lm make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/indelible/ make -j40 install DESTDIR=/build/reproducible-path/indelible-1.03/debian/indelible AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/indelible-1.03' make[2]: Entering directory '/build/reproducible-path/indelible-1.03' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/install -c indelible '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/install -c -m 644 indelible.1 '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/install -c -m 644 help/example_files/AMINOACID.shtml help/example_files/basicaminoacid.shtml help/example_files/basiccodon.shtml help/example_files/basicnucleotide.shtml help/example_files/basic.shtml help/example_files/branch2.shtml help/example_files/branch.shtml help/example_files/codon_RATES.txt help/example_files/CODON.shtml help/example_files/CODONsites.shtml help/example_files/indels.shtml help/example_files/multi-partitions.shtml help/example_files/mylengthmodel.txt help/example_files/nucleotide-branch.shtml help/example_files/nucleotide_RATES.txt help/example_files/NUCLEOTIDE.shtml help/example_files/random_branch_length_trees.JPG help/example_files/rates.shtml help/example_files/settings.shtml help/example_files/sitebranch.shtml help/example_files/trees.shtml help/example_files/trees.txt help/example_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/install -c -m 644 help/manual_files/branches.shtml help/manual_files/codon_RATES.txt help/manual_files/evolve.shtml help/manual_files/model.shtml help/manual_files/mylengthmodel.txt help/manual_files/nucleotide_RATES.txt help/manual_files/partitions.shtml help/manual_files/random_branch_length_trees.JPG help/manual_files/settings.shtml help/manual_files/symQmatrix.gif help/manual_files/tree.shtml help/manual_files/trees.txt help/manual_files/type.shtml help/manual_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' /usr/bin/install -c -m 644 help/index.html help/examples.shtml help/manual.shtml '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' make[2]: Leaving directory '/build/reproducible-path/indelible-1.03' make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'indelible' in '../indelible_1.03-6_amd64.deb'. dpkg-deb: building package 'indelible-dbgsym' in '../indelible-dbgsym_1.03-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../indelible_1.03-6_amd64.buildinfo dpkg-genchanges --build=binary -O../indelible_1.03-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3873885 and its subdirectories I: Current time: Fri Oct 31 00:26:19 -12 2025 I: pbuilder-time-stamp: 1761913579 Fri Oct 31 12:26:20 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri Oct 31 12:26:20 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri Oct 31 12:26:20 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 12:26:20 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-TOMPbu' ==================================================================================== Thu Dec 3 18:49:25 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 indelible unstable /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP 1.03-6" as arguments. Thu Dec 3 18:49:25 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-2KpLfFuP" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 3 18:49:26 UTC 2026 I: Downloading source for unstable/indelible=1.03-6 Reading package lists... NOTICE: 'indelible' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/indelible.git Please use: git clone https://salsa.debian.org/med-team/indelible.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 252 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main indelible 1.03-6 (dsc) [2145 B] Get:2 http://deb.debian.org/debian unstable/main indelible 1.03-6 (tar) [197 kB] Get:3 http://deb.debian.org/debian unstable/main indelible 1.03-6 (diff) [53.1 kB] Fetched 252 kB in 0s (10.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'indelible' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/indelible.git Please use: git clone https://salsa.debian.org/med-team/indelible.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 252 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main indelible 1.03-6 (dsc) [2145 B] Get:2 http://deb.debian.org/debian unstable/main indelible 1.03-6 (tar) [197 kB] Get:3 http://deb.debian.org/debian unstable/main indelible 1.03-6 (diff) [53.1 kB] Fetched 252 kB in 0s (10.8 MB/s) Download complete and in download only mode ============================================================================= Re-Building indelible in unstable on amd64 on ionos15-amd64 now. Date: Thu Dec 3 18:49:26 UTC 2026 Date UTC: Thu Dec 3 18:49:26 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/pbuilderrc_NzEj + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' indelible = debian-installer -o indelible = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' indelible = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/pbuilderrc_NzEj --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b2 --logfile b2/build.log indelible_1.03-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 08:49:27 +14 2026 I: pbuilder-time-stamp: 1796323767 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [indelible_1.03-6.dsc] I: copying [./indelible_1.03.orig.tar.xz] I: copying [./indelible_1.03-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./indelible_1.03-6.dsc: no acceptable signature found dpkg-source: info: extracting indelible in indelible-1.03 dpkg-source: info: unpacking indelible_1.03.orig.tar.xz dpkg-source: info: unpacking indelible_1.03-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-added-headers-for-getpid-2.patch dpkg-source: info: applying 0002-added-documentation-index-page.patch dpkg-source: info: applying 0003-added-manpage.patch dpkg-source: info: applying 0004-added-auto-tools-build-system.patch dpkg-source: info: applying 0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch dpkg-source: info: applying 0006-spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 3 18:49 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=4a313fe8a39e4a218dbb1191db6b8080 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2220210 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/pbuilderrc_NzEj --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b2 --logfile b2/build.log indelible_1.03-6.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Fetched 11.2 MB in 0s (120 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.194-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.194-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.15.1+dfsg-0.3_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.1+dfsg-0.3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-0.3) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/indelible-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../indelible_1.03-6_source.changes dpkg-buildpackage: info: source package indelible dpkg-buildpackage: info: source version 1.03-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:4: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am:2: warning: source file 'src/indelible.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibility. Makefile.am:8: warning: source file 'src/control.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/models.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/paml.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/randoms.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '2222' is supported by ustar format... yes checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for cos in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for int32_t... yes checking for uint32_t... yes checking for _Bool... no checking for stdbool.h that conforms to C99 or later... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for limits.h... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/indelible-1.03' g++ -DPACKAGE_NAME=\"indelible\" -DPACKAGE_TARNAME=\"indelible\" -DPACKAGE_VERSION=\"1.03\" -DPACKAGE_STRING=\"indelible\ 1.03\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"indelible\" -DVERSION=\"1.03\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_LIMITS_H=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -I. -Isrc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o indelible-indelible.o `test -f 'src/indelible.cpp' || echo './'`src/indelible.cpp In file included from src/randoms.cpp:31, from src/paml.cpp:41, from src/models.cpp:35, from src/control.cpp:38, from src/indelible.cpp:135: src/MersenneTwister.h: In member function 'MTRand::uint32 MTRand::randInt()': src/MersenneTwister.h:187:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register uint32 s1; | ^~ src/MersenneTwister.h: In member function 'void MTRand::seed(uint32*, uint32)': src/MersenneTwister.h:232:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 232 | register int i = 1; | ^ src/MersenneTwister.h:233:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 233 | register uint32 j = 0; | ^ src/MersenneTwister.h:234:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 234 | register int k = ( N > seedLength ? N : seedLength ); | ^ src/MersenneTwister.h: In member function 'void MTRand::initialize(uint32)': src/MersenneTwister.h:273:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 273 | register uint32 *s = state; | ^ src/MersenneTwister.h:274:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 274 | register uint32 *r = state; | ^ src/MersenneTwister.h:275:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 275 | register int i = 1; | ^ src/MersenneTwister.h: In member function 'void MTRand::reload()': src/MersenneTwister.h:289:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 289 | register uint32 *p = state; | ^ src/MersenneTwister.h:290:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 290 | register int i; | ^ src/MersenneTwister.h: In member function 'void MTRand::save(uint32*) const': src/MersenneTwister.h:395:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 395 | register uint32 *sa = saveArray; | ^~ src/MersenneTwister.h:396:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 396 | register const uint32 *s = state; | ^ src/MersenneTwister.h:397:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 397 | register int i = N; | ^ src/MersenneTwister.h: In member function 'void MTRand::load(uint32*)': src/MersenneTwister.h:405:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 405 | register uint32 *s = state; | ^ src/MersenneTwister.h:406:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 406 | register uint32 *la = loadArray; | ^~ src/MersenneTwister.h:407:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 407 | register int i = N; | ^ src/MersenneTwister.h: In function 'std::ostream& operator<<(std::ostream&, const MTRand&)': src/MersenneTwister.h:416:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 416 | register const MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:417:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 417 | register int i = mtrand.N; | ^ src/MersenneTwister.h: In function 'std::istream& operator>>(std::istream&, MTRand&)': src/MersenneTwister.h:425:34: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:426:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register int i = mtrand.N; | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o indelible indelible-indelible.o -lm make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/indelible/ make -j42 install DESTDIR=/build/reproducible-path/indelible-1.03/debian/indelible AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/indelible-1.03' make[2]: Entering directory '/build/reproducible-path/indelible-1.03' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible' /usr/bin/install -c indelible '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/install -c -m 644 indelible.1 '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/install -c -m 644 help/example_files/AMINOACID.shtml help/example_files/basicaminoacid.shtml help/example_files/basiccodon.shtml help/example_files/basicnucleotide.shtml help/example_files/basic.shtml help/example_files/branch2.shtml help/example_files/branch.shtml help/example_files/codon_RATES.txt help/example_files/CODON.shtml help/example_files/CODONsites.shtml help/example_files/indels.shtml help/example_files/multi-partitions.shtml help/example_files/mylengthmodel.txt help/example_files/nucleotide-branch.shtml help/example_files/nucleotide_RATES.txt help/example_files/NUCLEOTIDE.shtml help/example_files/random_branch_length_trees.JPG help/example_files/rates.shtml help/example_files/settings.shtml help/example_files/sitebranch.shtml help/example_files/trees.shtml help/example_files/trees.txt help/example_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/install -c -m 644 help/manual_files/branches.shtml help/manual_files/codon_RATES.txt help/manual_files/evolve.shtml help/manual_files/model.shtml help/manual_files/mylengthmodel.txt help/manual_files/nucleotide_RATES.txt help/manual_files/partitions.shtml help/manual_files/random_branch_length_trees.JPG help/manual_files/settings.shtml help/manual_files/symQmatrix.gif help/manual_files/tree.shtml help/manual_files/trees.txt help/manual_files/type.shtml help/manual_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' /usr/bin/install -c -m 644 help/index.html help/examples.shtml help/manual.shtml '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' make[2]: Leaving directory '/build/reproducible-path/indelible-1.03' make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'indelible' in '../indelible_1.03-6_amd64.deb'. dpkg-deb: building package 'indelible-dbgsym' in '../indelible-dbgsym_1.03-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../indelible_1.03-6_amd64.buildinfo dpkg-genchanges --build=binary -O../indelible_1.03-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2220210 and its subdirectories I: Current time: Fri Dec 4 08:50:59 +14 2026 I: pbuilder-time-stamp: 1796323859 + false + set +x Thu Dec 3 18:50:59 UTC 2026 I: Signing ./b2/indelible_1.03-6_amd64.buildinfo as indelible_1.03-6_amd64.buildinfo.asc Thu Dec 3 18:50:59 UTC 2026 I: Signed ./b2/indelible_1.03-6_amd64.buildinfo as ./b2/indelible_1.03-6_amd64.buildinfo.asc Thu Dec 3 18:50:59 UTC 2026 - build #2 for indelible/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Thu Dec 3 18:50:59 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-2KpLfFuP, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP: total 48 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 12:26 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 12:27 b2 -rw-rw-r-- 1 jenkins jenkins 2145 Dec 30 2023 indelible_1.03-6.dsc -rw------- 1 jenkins jenkins 33918 Oct 31 12:26 rbuildlog.MzzicOj /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b1: total 2868 -rw-r--r-- 1 jenkins jenkins 30373 Oct 31 12:26 build.log -rw-r--r-- 1 jenkins jenkins 2399920 Oct 31 12:26 indelible-dbgsym_1.03-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 53144 Oct 31 12:26 indelible_1.03-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2145 Oct 31 12:26 indelible_1.03-6.dsc -rw-r--r-- 1 jenkins jenkins 4774 Oct 31 12:26 indelible_1.03-6_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5656 Oct 31 12:26 indelible_1.03-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1471 Oct 31 12:26 indelible_1.03-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 409308 Oct 31 12:26 indelible_1.03-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 1317 Oct 31 12:26 indelible_1.03-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b2: total 2856 -rw-rw-r-- 1 jenkins jenkins 32303 Oct 31 12:27 build.log -rw-r--r-- 1 jenkins jenkins 2399920 Oct 31 12:27 indelible-dbgsym_1.03-6_amd64.deb -rw-r--r-- 1 jenkins jenkins 53144 Oct 31 12:27 indelible_1.03-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2145 Oct 31 12:27 indelible_1.03-6.dsc -rw-rw-r-- 1 jenkins jenkins 4774 Oct 31 12:27 indelible_1.03-6_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5656 Oct 31 12:27 indelible_1.03-6_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1471 Oct 31 12:27 indelible_1.03-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 409308 Oct 31 12:27 indelible_1.03-6_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1317 Oct 31 12:27 indelible_1.03-6_source.changes Fri Oct 31 12:27:59 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri Oct 31 12:28:00 UTC 2025 I: indelible_1.03-6_amd64.changes: Format: 1.8 Date: Sat, 30 Dec 2023 19:11:32 +0100 Source: indelible Binary: indelible indelible-dbgsym Architecture: amd64 Version: 1.03-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: indelible - powerful and flexible simulator of biological evolution Changes: indelible (1.03-6) unstable; urgency=medium . * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.6.2. * d/s/lintian-overrides: flag false positive error. Checksums-Sha1: 4707ce224469a38a1ae9ec42122fa35d321d28f2 2399920 indelible-dbgsym_1.03-6_amd64.deb a4c800323f856d1aaa5382436ed9bc68e566a8d0 4774 indelible_1.03-6_amd64.buildinfo 8a5acb8014178d8dbb27c1cf87600127dc5d34fd 409308 indelible_1.03-6_amd64.deb Checksums-Sha256: e4f0217a12a2c325530d45b1f9937735fd469e27ab0376f78882decd91481e4e 2399920 indelible-dbgsym_1.03-6_amd64.deb aaf219ddd918a7d9eeb384e533938b28d6e6e8172db423a7bd683327d28f4a16 4774 indelible_1.03-6_amd64.buildinfo 4404d14f3d0d3fb24b30c309034b9e200f437fe0177418ee3098d30bac9e1aba 409308 indelible_1.03-6_amd64.deb Files: 2f970580b05ba53c82eb880e4259c317 2399920 debug optional indelible-dbgsym_1.03-6_amd64.deb ea3840aedb8f5e65be032cae1f8b74d7 4774 science optional indelible_1.03-6_amd64.buildinfo 82df6ce1494a801bc38e0f2426333945 409308 science optional indelible_1.03-6_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/indelible_1.03-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/indelible_1.03-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/indelible_1.03-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/indelible_1.03-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/indelible_1.03-6_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/indelible_1.03-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 12:26:20.080575383 +0000 +++ b2/build.log 2025-10-31 12:27:59.704693991 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 31 00:25:03 -12 2025 -I: pbuilder-time-stamp: 1761913503 +I: Current time: Fri Dec 4 08:49:27 +14 2026 +I: pbuilder-time-stamp: 1796323767 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,53 +29,85 @@ dpkg-source: info: applying 0006-spelling.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3873885/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 3 18:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='020fbf6cea46465188f1290a514084ad' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3873885' - PS1='# ' - PS2='> ' + INVOCATION_ID=4a313fe8a39e4a218dbb1191db6b8080 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2220210 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/pbuilderrc_F3Ev --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b1 --logfile b1/build.log indelible_1.03-6.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/pbuilderrc_NzEj --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b2 --logfile b2/build.log indelible_1.03-6.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3873885/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -140,7 +172,7 @@ Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] -Fetched 11.2 MB in 0s (128 MB/s) +Fetched 11.2 MB in 0s (120 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -271,7 +303,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/indelible-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../indelible_1.03-6_source.changes +I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/indelible-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../indelible_1.03-6_source.changes dpkg-buildpackage: info: source package indelible dpkg-buildpackage: info: source version 1.03-6 dpkg-buildpackage: info: source distribution unstable @@ -321,8 +357,8 @@ checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes -checking whether UID '1111' is supported by ustar format... yes -checking whether GID '1111' is supported by ustar format... yes +checking whether UID '2222' is supported by ustar format... yes +checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc @@ -369,7 +405,7 @@ config.status: creating Makefile config.status: executing depfiles commands dh_auto_build - make -j40 + make -j42 make[1]: Entering directory '/build/reproducible-path/indelible-1.03' g++ -DPACKAGE_NAME=\"indelible\" -DPACKAGE_TARNAME=\"indelible\" -DPACKAGE_VERSION=\"1.03\" -DPACKAGE_STRING=\"indelible\ 1.03\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"indelible\" -DVERSION=\"1.03\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_LIMITS_H=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -I. -Isrc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o indelible-indelible.o `test -f 'src/indelible.cpp' || echo './'`src/indelible.cpp In file included from src/randoms.cpp:31, @@ -448,15 +484,15 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/indelible/ - make -j40 install DESTDIR=/build/reproducible-path/indelible-1.03/debian/indelible AM_UPDATE_INFO_DIR=no + make -j42 install DESTDIR=/build/reproducible-path/indelible-1.03/debian/indelible AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/indelible-1.03' make[2]: Entering directory '/build/reproducible-path/indelible-1.03' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' - /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' + /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible' /usr/bin/install -c indelible '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' - /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/install -c -m 644 indelible.1 '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' + /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/install -c -m 644 help/example_files/AMINOACID.shtml help/example_files/basicaminoacid.shtml help/example_files/basiccodon.shtml help/example_files/basicnucleotide.shtml help/example_files/basic.shtml help/example_files/branch2.shtml help/example_files/branch.shtml help/example_files/codon_RATES.txt help/example_files/CODON.shtml help/example_files/CODONsites.shtml help/example_files/indels.shtml help/example_files/multi-partitions.shtml help/example_files/mylengthmodel.txt help/example_files/nucleotide-branch.shtml help/example_files/nucleotide_RATES.txt help/example_files/NUCLEOTIDE.shtml help/example_files/random_branch_length_trees.JPG help/example_files/rates.shtml help/example_files/settings.shtml help/example_files/sitebranch.shtml help/example_files/trees.shtml help/example_files/trees.txt help/example_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/install -c -m 644 help/manual_files/branches.shtml help/manual_files/codon_RATES.txt help/manual_files/evolve.shtml help/manual_files/model.shtml help/manual_files/mylengthmodel.txt help/manual_files/nucleotide_RATES.txt help/manual_files/partitions.shtml help/manual_files/random_branch_length_trees.JPG help/manual_files/settings.shtml help/manual_files/symQmatrix.gif help/manual_files/tree.shtml help/manual_files/trees.txt help/manual_files/type.shtml help/manual_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' @@ -491,12 +527,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2220210/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3873885 and its subdirectories -I: Current time: Fri Oct 31 00:26:19 -12 2025 -I: pbuilder-time-stamp: 1761913579 +I: removing directory /srv/workspace/pbuilder/2220210 and its subdirectories +I: Current time: Fri Dec 4 08:50:59 +14 2026 +I: pbuilder-time-stamp: 1796323859 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/indelible_1.03-6.diff: 70.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/indelible_1.03-6.diff.gz b2/build.log: 75.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 76.5% -- replaced with stdout Fri Oct 31 12:28:00 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_indelible_unstable_amd64_1761913680 + touch /var/log/reproducible-builds/diffoscope_stamp_indelible_unstable_amd64_1761913680 + RESULT=0 + systemd-run '--description=diffoscope on indelible/1.03-6 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_15-77283 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP --run-session -c jenkins-reproducible-unstable-diffoscope-50af812f-728b-4381-9d70-c6988ebc27de -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/dbd-tmp-W8VJOG6 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/indelible_1.03-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/indelible_1.03-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/indelible_1.03-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b1/indelible_1.03-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b2/indelible_1.03-6_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_15-77283.service; invocation ID: 4db15f53b8f9484d896b527ad99875fc # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/indelible_1.03-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/indelible_1.03-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/indelible_1.03-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b1/indelible_1.03-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZVegY7CP/b2/indelible_1.03-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 208ms CPU time consumed: 177ms Memory peak: 17.3M (swap: 0B) _ _ _ _ _ _ (_)_ __ __| | ___| (_) |__ | | ___ | | '_ \ / _` |/ _ \ | | '_ \| |/ _ \ | | | | | (_| | __/ | | |_) | | __/ |_|_| |_|\__,_|\___|_|_|_.__/|_|\___| Fri Oct 31 12:28:01 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 12:28:01 UTC 2025 I: indelible from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 12:28:01] INFO: Starting at 2025-10-31 12:28:01.553481 [2025-10-31 12:28:01] INFO: Generating the pages of 1 package(s) [2025-10-31 12:28:01] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/indelible didn't produce a buildlog, even though it has been built. [2025-10-31 12:28:01] INFO: Finished at 2025-10-31 12:28:01.761168, took: 0:00:00.207690 Fri Oct 31 12:28:01 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/indelible.html Fri Oct 31 12:28:01 UTC 2025 I: Removing signed indelible_1.03-6_amd64.buildinfo.asc files: removed './b1/indelible_1.03-6_amd64.buildinfo.asc' removed './b2/indelible_1.03-6_amd64.buildinfo.asc' 1761913681 amd64 unstable indelible Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/indelible_1.03-6.rbuild.log: 73.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/indelible_1.03-6.rbuild.log.gz [2025-10-31 12:28:02] INFO: Starting at 2025-10-31 12:28:02.094278 [2025-10-31 12:28:02] INFO: Generating the pages of 1 package(s) [2025-10-31 12:28:02] INFO: Finished at 2025-10-31 12:28:02.357936, took: 0:00:00.263661 All cleanup done. Fri Oct 31 12:28:02 UTC 2025 - total duration: 0h 3m 11s. Fri Oct 31 12:28:02 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-0u7VnpIj, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 3min 11.806s CPU time consumed: 3.087s Memory peak: 44.4M (swap: 0B)