Running as unit: rb-build-amd64_16-39556.service ==================================================================================== Fri Nov 22 15:44:03 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_16) on jenkins, called using "ionos15-amd64 ionos11-amd64" as arguments. Fri Nov 22 15:44:03 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-BC24nkkY" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 15:44:03 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Nov 22 15:44:04 UTC 2024 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-88u7p3' Fri Nov 22 15:44:04 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Nov 22 15:44:04 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-4VQiju' ok, let's check if ruby-crb-blast is building anywhere yet… ok, ruby-crb-blast is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of ruby-crb-blast in trixie on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Fri Nov 22 15:44:09 UTC 2024 I: starting to build ruby-crb-blast/trixie/amd64 on jenkins on '2024-11-22 15:44' Fri Nov 22 15:44:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_16/39556/console.log 1732290249 amd64 trixie ruby-crb-blast Fri Nov 22 15:44:09 UTC 2024 I: Downloading source for trixie/ruby-crb-blast=0.6.9-5 --2024-11-22 15:44:10-- http://deb.debian.org/debian/pool/main/r/ruby-crb-blast/ruby-crb-blast_0.6.9-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2166 (2.1K) [text/prs.lines.tag] Saving to: ‘ruby-crb-blast_0.6.9-5.dsc’ 0K .. 100% 295M=0s 2024-11-22 15:44:10 (295 MB/s) - ‘ruby-crb-blast_0.6.9-5.dsc’ saved [2166/2166] --2024-11-22 15:44:10-- http://deb.debian.org/debian/pool/main/r/ruby-crb-blast/ruby-crb-blast_0.6.9-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2166 (2.1K) [text/prs.lines.tag] Saving to: ‘ruby-crb-blast_0.6.9-5.dsc’ 0K .. 100% 295M=0s 2024-11-22 15:44:10 (295 MB/s) - ‘ruby-crb-blast_0.6.9-5.dsc’ saved [2166/2166] Fri Nov 22 15:44:10 UTC 2024 I: ruby-crb-blast_0.6.9-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ruby-crb-blast Binary: ruby-crb-blast Architecture: all Version: 0.6.9-5 Maintainer: Debian Ruby Team Uploaders: Michael R. Crusoe Homepage: https://github.com/cboursnell/crb-blast Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/ruby-team/ruby-crb-blast Vcs-Git: https://salsa.debian.org/ruby-team/ruby-crb-blast.git Testsuite: autopkgtest-pkg-ruby Build-Depends: debhelper-compat (= 13), gem2deb, help2man, ncbi-blast+, rake, ruby-bio, ruby-fixwhich, ruby-shoulda, ruby-threach, ruby-trollop Package-List: ruby-crb-blast deb ruby optional arch=all Checksums-Sha1: 05a16625e3947180cfd1d23e11e0cc33e59ba998 37227 ruby-crb-blast_0.6.9.orig.tar.gz ac6700e78fd661cff349987b2373b1a24ef25aae 5740 ruby-crb-blast_0.6.9-5.debian.tar.xz Checksums-Sha256: 08af1561894b06df022485792be28d754d56fc1147ba1aa6c9c16e1aef179725 37227 ruby-crb-blast_0.6.9.orig.tar.gz 2849e9137256ba79c722159022bf040708e342e48f5f65b127c4923fa35e1f5e 5740 ruby-crb-blast_0.6.9-5.debian.tar.xz Files: 21fae4bdec5d3523e2f6fd6a18917fca 37227 ruby-crb-blast_0.6.9.orig.tar.gz 895927894756575fa1138db8fb5f7e09 5740 ruby-crb-blast_0.6.9-5.debian.tar.xz Ruby-Versions: all -----BEGIN PGP SIGNATURE----- iQJJBAEBCAAzFiEEjtbD+LrJ23/BMKhw+COicpiDyXwFAmTj3OEVHGthbmFzaGly b0BkZWJpYW4ub3JnAAoJEPgjonKYg8l8mMIQAJxTyUQaZEO6ZKm/WOuw+yL/jRWm q0KoUvD6/sGRYqCfDcL3g+tzquqP8r0fZr+GkankrvhbYtaXoW9UQEcAJJz2HrTK i/qJyuBiiwckQbwx2HMyNq6dzM4nfz6ex3dt6PBBo70l+cpwyHXnMix0kiRJcdK/ kNW48K5j+lLKcXQT859t+gSFRqrVT0hfb6Lc9bLtiqe03y9TjZ32xXFvRE2v8Ljf q+ZizpTrF93dbzBEwHnYz/Npj+7DiVZYdHJQoY3+IxZbpMACrVm897Ne1PPkNF6H 4yTAfwtsspSg8KYf+xH+/9lvyVmsHoDoFJROYKi6b2isYY00wuA5i/E+ZjkWDap0 8PYAreDVkkNSaHjZ1OQxEGCmvvLIaE7ZwK9YCZRe89cye846sVhDS4EyVISo1cN0 dKRD3HQeB4pEc1NQZgvRImFI0QPoRXjAvFcCdgJ8eEXt/+0QYC+teVbmgsTOlaga rgz2o1mFS3wm5kzvLRsR68ceyUSKgiqEAs1Jx7lV7bbTlUTTJCfFfPVuWjvwv83Q UbP6lAkBtxoUKaY5EQz4GzxVw+tm1WDUwo1qH2IrUDSzZdXCC8wS9j3nwtx+CD8x nVMB4ddwdmjL+HNE26LU9pL89wpy1A+4pTPhOFiSgDXxKi3BmWr7cKHZq4WiUzHs eRvdssW8KNyY4FJB =8CR1 -----END PGP SIGNATURE----- Fri Nov 22 15:44:10 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 15:44:10 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Nov 22 15:44:10 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Nov 22 15:44:10 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Nov 22 15:44:10 UTC 2024 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-KsLwJO' ==================================================================================== Thu Dec 25 22:07:11 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 ruby-crb-blast trixie /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6 0.6.9-5" as arguments. Thu Dec 25 22:07:11 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-QjXaMwua" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 25 22:07:11 UTC 2025 I: Downloading source for trixie/ruby-crb-blast=0.6.9-5 Reading package lists... NOTICE: 'ruby-crb-blast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/ruby-team/ruby-crb-blast.git Please use: git clone https://salsa.debian.org/ruby-team/ruby-crb-blast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 45.1 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (dsc) [2166 B] Get:2 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (tar) [37.2 kB] Get:3 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (diff) [5740 B] Fetched 45.1 kB in 0s (2077 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ruby-crb-blast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/ruby-team/ruby-crb-blast.git Please use: git clone https://salsa.debian.org/ruby-team/ruby-crb-blast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 45.1 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (dsc) [2166 B] Get:2 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (tar) [37.2 kB] Get:3 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (diff) [5740 B] Fetched 45.1 kB in 0s (2077 kB/s) Download complete and in download only mode ============================================================================= Building ruby-crb-blast in trixie on amd64 on ionos15-amd64 now. Date: Thu Dec 25 22:07:11 UTC 2025 Date UTC: Thu Dec 25 22:07:11 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 10:07:11 -12 2025 I: pbuilder-time-stamp: 1766700431 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ruby-crb-blast_0.6.9-5.dsc] I: copying [./ruby-crb-blast_0.6.9.orig.tar.gz] I: copying [./ruby-crb-blast_0.6.9-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 21 21:53:37 2023 gpgv: using RSA key 8ED6C3F8BAC9DB7FC130A870F823A2729883C97C gpgv: issuer "kanashiro@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ruby-crb-blast_0.6.9-5.dsc: no acceptable signature found dpkg-source: info: extracting ruby-crb-blast in ruby-crb-blast-0.6.9 dpkg-source: info: unpacking ruby-crb-blast_0.6.9.orig.tar.gz dpkg-source: info: unpacking ruby-crb-blast_0.6.9-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_less_threads dpkg-source: info: applying file_existance_rename dpkg-source: info: applying drop-coverage-check dpkg-source: info: applying drop-bindeps-req dpkg-source: info: applying adjust-test dpkg-source: info: applying relax-bio.patch dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2447439/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='aea2fa13650a45a4b4f8d1cdb3d58ed0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2447439' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/pbuilderrc_ZIJn --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b1 --logfile b1/build.log ruby-crb-blast_0.6.9-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2447439/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gem2deb, help2man, ncbi-blast+, rake, ruby-bio, ruby-fixwhich, ruby-shoulda, ruby-threach, ruby-trollop dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gem2deb; however: Package gem2deb is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on rake; however: Package rake is not installed. pbuilder-satisfydepends-dummy depends on ruby-bio; however: Package ruby-bio is not installed. pbuilder-satisfydepends-dummy depends on ruby-fixwhich; however: Package ruby-fixwhich is not installed. pbuilder-satisfydepends-dummy depends on ruby-shoulda; however: Package ruby-shoulda is not installed. pbuilder-satisfydepends-dummy depends on ruby-threach; however: Package ruby-threach is not installed. pbuilder-satisfydepends-dummy depends on ruby-trollop; however: Package ruby-trollop is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} gem2deb{a} gem2deb-test-runner{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} libldap-2.5-0{a} liblmdb0{a} liblocale-gettext-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnpth0t64{a} libnsl2{a} libparams-classify-perl{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libruby{a} libruby3.1t64{a} libsasl2-2{a} libsasl2-modules-db{a} libsub-quote-perl{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} netbase{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} rake{a} readline-common{a} ruby{a} ruby-activesupport{a} ruby-all-dev{a} ruby-bio{a} ruby-concurrent{a} ruby-facade{a} ruby-fixwhich{a} ruby-i18n{a} ruby-net-telnet{a} ruby-pathname2{a} ruby-rubygems{a} ruby-sdbm{a} ruby-shoulda{a} ruby-shoulda-context{a} ruby-shoulda-matchers{a} ruby-threach{a} ruby-trollop{a} ruby-tzinfo{a} ruby-webrick{a} ruby-xmlrpc{a} ruby-zeitwerk{a} ruby3.1{a} ruby3.1-dev{a} rubygems-integration{a} sensible-utils{a} tzdata{a} wdiff{a} The following packages are RECOMMENDED but will NOT be installed: apt-file curl dctrl-tools debian-keyring dput dput-ng dupload equivs fonts-lato gnupg-utils gpg-wks-client hmmer krb5-locales libarchive-cpio-perl libdata-dump-perl libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjs-jquery libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx mafft muscle pristine-tar probcons python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg ruby3.1-doc sim4 strace t-coffee unzip wget zip 0 packages upgraded, 153 newly installed, 0 to remove and 0 not upgraded. Need to get 65.0 MB of archives. After unpacking 265 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libassuan9 amd64 3.0.1-2 [60.6 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 gpgconf amd64 2.2.45-2 [120 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libnpth0t64 amd64 1.6-3.1+b1 [18.2 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 dirmngr amd64 2.2.45-2 [368 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 gnupg-l10n all 2.2.45-2 [705 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 gpg amd64 2.2.45-2 [531 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 pinentry-curses amd64 1.2.1-4+b1 [79.7 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 gpg-agent amd64 2.2.45-2 [251 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 gpgsm amd64 2.2.45-2 [255 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 gnupg all 2.2.45-2 [376 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libfile-touch-perl all 0.12-2 [8816 B] Get: 73 http://deb.debian.org/debian trixie/main amd64 libio-pty-perl amd64 1:1.20-1+b2 [34.3 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libipc-run-perl all 20231003.0-2 [101 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b4 [36.1 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 wdiff amd64 1.2.2-6 [119 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 devscripts all 2.24.3 [1079 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 rubygems-integration all 1.18 [6704 B] Get: 112 http://deb.debian.org/debian trixie/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libruby amd64 1:3.1+nmu1 [4664 B] Get: 116 http://deb.debian.org/debian trixie/main amd64 ruby-sdbm amd64 1.0.0-5+b5 [15.6 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libruby3.1t64 amd64 3.1.2-8.4 [5411 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 ruby3.1 amd64 3.1.2-8.4 [664 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 ruby-rubygems all 3.4.20-1 [309 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 ruby amd64 1:3.1+nmu1 [5584 B] Get: 124 http://deb.debian.org/debian trixie/main amd64 rake all 13.2.1-1 [65.2 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 gem2deb-test-runner amd64 2.2.5 [17.9 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b2 [642 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 ruby3.1-dev amd64 3.1.2-8.4 [1002 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 ruby-all-dev amd64 1:3.1+nmu1 [5672 B] Get: 130 http://deb.debian.org/debian trixie/main amd64 gem2deb amd64 2.2.5 [48.0 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 help2man amd64 1.49.3 [198 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+ amd64 2.16.0+ds-6 [15.2 MB] Get: 140 http://deb.debian.org/debian trixie/main amd64 ruby-concurrent all 1.2.3-4 [290 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 ruby-i18n all 1.14.5-1 [41.4 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 ruby-tzinfo all 2.0.6-1 [66.7 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 ruby-zeitwerk all 2.6.8-1 [43.0 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 ruby-activesupport all 2:6.1.7.3+dfsg-4 [202 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 ruby-bio all 2.0.5-1 [657 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 ruby-facade all 1.2.1-1 [8996 B] Get: 147 http://deb.debian.org/debian trixie/main amd64 ruby-pathname2 all 1.8.2-2 [17.9 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 ruby-fixwhich all 1.0.2-2 [4284 B] Get: 149 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda-context all 2.0.0-2 [17.1 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda-matchers all 4.3.0-2 [72.8 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda all 4.0.0-3 [6352 B] Get: 152 http://deb.debian.org/debian trixie/main amd64 ruby-threach all 0.2.0-2 [5320 B] Get: 153 http://deb.debian.org/debian trixie/main amd64 ruby-trollop all 2.0-2.1 [17.0 kB] Fetched 65.0 MB in 5s (12.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20304 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... 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Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../109-liblmdb0_0.9.31-1+b2_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.31-1+b2) ... Selecting previously unselected package libmbedcrypto7t64:amd64. Preparing to unpack .../110-libmbedcrypto7t64_2.28.8-1_amd64.deb ... Unpacking libmbedcrypto7t64:amd64 (2.28.8-1) ... Selecting previously unselected package libmbedx509-1t64:amd64. Preparing to unpack .../111-libmbedx509-1t64_2.28.8-1_amd64.deb ... Unpacking libmbedx509-1t64:amd64 (2.28.8-1) ... Selecting previously unselected package libmbedtls14t64:amd64. Preparing to unpack .../112-libmbedtls14t64_2.28.8-1_amd64.deb ... Unpacking libmbedtls14t64:amd64 (2.28.8-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../113-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../114-libuv1t64_1.48.0-7_amd64.deb ... Unpacking libuv1t64:amd64 (1.48.0-7) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../115-ncbi-data_6.1.20170106+dfsg2-5_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../116-ncbi-blast+_2.16.0+ds-6_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-6) ... Selecting previously unselected package ruby-concurrent. Preparing to unpack .../117-ruby-concurrent_1.2.3-4_all.deb ... Unpacking ruby-concurrent (1.2.3-4) ... Selecting previously unselected package ruby-i18n. Preparing to unpack .../118-ruby-i18n_1.14.5-1_all.deb ... Unpacking ruby-i18n (1.14.5-1) ... Selecting previously unselected package ruby-tzinfo. Preparing to unpack .../119-ruby-tzinfo_2.0.6-1_all.deb ... Unpacking ruby-tzinfo (2.0.6-1) ... Selecting previously unselected package ruby-zeitwerk. Preparing to unpack .../120-ruby-zeitwerk_2.6.8-1_all.deb ... Unpacking ruby-zeitwerk (2.6.8-1) ... Selecting previously unselected package ruby-activesupport. Preparing to unpack .../121-ruby-activesupport_2%3a6.1.7.3+dfsg-4_all.deb ... Unpacking ruby-activesupport (2:6.1.7.3+dfsg-4) ... Selecting previously unselected package ruby-bio. Preparing to unpack .../122-ruby-bio_2.0.5-1_all.deb ... Unpacking ruby-bio (2.0.5-1) ... Selecting previously unselected package ruby-facade. Preparing to unpack .../123-ruby-facade_1.2.1-1_all.deb ... Unpacking ruby-facade (1.2.1-1) ... Selecting previously unselected package ruby-pathname2. Preparing to unpack .../124-ruby-pathname2_1.8.2-2_all.deb ... Unpacking ruby-pathname2 (1.8.2-2) ... Selecting previously unselected package ruby-fixwhich. Preparing to unpack .../125-ruby-fixwhich_1.0.2-2_all.deb ... Unpacking ruby-fixwhich (1.0.2-2) ... Selecting previously unselected package ruby-shoulda-context. Preparing to unpack .../126-ruby-shoulda-context_2.0.0-2_all.deb ... Unpacking ruby-shoulda-context (2.0.0-2) ... Selecting previously unselected package ruby-shoulda-matchers. Preparing to unpack .../127-ruby-shoulda-matchers_4.3.0-2_all.deb ... Unpacking ruby-shoulda-matchers (4.3.0-2) ... Selecting previously unselected package ruby-shoulda. Preparing to unpack .../128-ruby-shoulda_4.0.0-3_all.deb ... Unpacking ruby-shoulda (4.0.0-3) ... Selecting previously unselected package ruby-threach. Preparing to unpack .../129-ruby-threach_0.2.0-2_all.deb ... Unpacking ruby-threach (0.2.0-2) ... Selecting previously unselected package ruby-trollop. Preparing to unpack .../130-ruby-trollop_2.0-2.1_all.deb ... Unpacking ruby-trollop (2.0-2.1) ... Setting up libksba8:amd64 (1.6.7-2+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up ncbi-data (6.1.20170106+dfsg2-5) ... Setting up wdiff (1.2.2-6) ... Setting up libfile-which-perl (1.27-2) ... Setting up libnpth0t64:amd64 (1.6-3.1+b1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up ruby-facade (1.2.1-1) ... Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libio-pty-perl (1:1.20-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libedit2:amd64 (3.1-20240808-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libuv1t64:amd64 (1.48.0-7) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up ruby-concurrent (1.2.3-4) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 25 22:07:43 UTC 2025. Universal Time is now: Thu Dec 25 22:07:43 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b2) ... Setting up gnupg-l10n (2.2.45-2) ... Setting up libncurses6:amd64 (6.5-2+b1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ... Setting up ruby-i18n (1.14.5-1) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up ruby-webrick (1.8.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ruby-pathname2 (1.8.2-2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libassuan9:amd64 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up ruby-zeitwerk (2.6.8-1) ... Setting up liburi-perl (5.30-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up ruby-bio (2.0.5-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2+b2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up ruby-tzinfo (2.0.6-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up gpgconf (2.2.45-2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.45-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up gpgsm (2.2.45-2) ... Setting up rubygems-integration (1.18) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.45-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up gnupg (2.2.45-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up ncbi-blast+ (2.16.0+ds-6) ... Setting up rake (13.2.1-1) ... Setting up ruby3.1 (3.1.2-8.4) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up ruby-rubygems (3.4.20-1) ... Setting up devscripts (2.24.3) ... Setting up libruby3.1t64:amd64 (3.1.2-8.4) ... Setting up ruby3.1-dev:amd64 (3.1.2-8.4) ... Setting up libruby:amd64 (1:3.1+nmu1) ... Setting up ruby-all-dev:amd64 (1:3.1+nmu1) ... Setting up ruby (1:3.1+nmu1) ... Setting up ruby-threach (0.2.0-2) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b5) ... Setting up ruby-fixwhich (1.0.2-2) ... Setting up ruby-activesupport (2:6.1.7.3+dfsg-4) ... Setting up ruby-shoulda-context (2.0.0-2) ... Setting up ruby-trollop (2.0-2.1) ... Setting up gem2deb-test-runner (2.2.5) ... Setting up ruby-shoulda-matchers (4.3.0-2) ... Setting up gem2deb (2.2.5) ... Setting up ruby-shoulda (4.0.0-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aquila Macedo Costa dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=ruby --with ruby dh_auto_clean -O--buildsystem=ruby dh_ruby --clean W: XS-Ruby-Versions is deprecated, and will be ignored dh_autoreconf_clean -O--buildsystem=ruby dh_clean -O--buildsystem=ruby debian/rules binary dh binary --buildsystem=ruby --with ruby dh_update_autotools_config -O--buildsystem=ruby dh_autoreconf -O--buildsystem=ruby dh_auto_configure -O--buildsystem=ruby dh_ruby --configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/ruby-crb-blast-0.6.9' dh_auto_build dh_ruby --build RUBYLIB=lib help2man --no-info --name='Conditional Reciprocal Best BLAST' \ bin/crb-blast > debian/crb-blast.1 make[1]: Leaving directory '/build/reproducible-path/ruby-crb-blast-0.6.9' dh_auto_test -O--buildsystem=ruby dh_ruby --test create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=ruby dh_prep -O--buildsystem=ruby dh_auto_install --destdir=debian/ruby-crb-blast/ -O--buildsystem=ruby dh_ruby --install /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast ┌──────────────────────────────────────────────────────────────────────────────┐ │ ruby-crb-blast: Install files │ └──────────────────────────────────────────────────────────────────────────────┘ install -d /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin install -D -m755 /build/reproducible-path/ruby-crb-blast-0.6.9/bin/crb-blast /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast install -d /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/cmd.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/cmd.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/crb-blast.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/hit.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/hit.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/version.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/version.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast.rb Rewriting shebang line of /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast ┌──────────────────────────────────────────────────────────────────────────────┐ │ ruby-crb-blast: Install Rubygems integration metadata │ └──────────────────────────────────────────────────────────────────────────────┘ generating gemspec at /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all/specifications/crb-blast-0.6.9.gemspec /usr/bin/ruby3.1 /usr/bin/gem2deb-test-runner ┌──────────────────────────────────────────────────────────────────────────────┐ │ Checking Rubygems dependency resolution on ruby3.1 │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.1.0:/var/lib/gems/3.1.0:/usr/local/lib/ruby/gems/3.1.0:/usr/lib/ruby/gems/3.1.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.1.0:/usr/share/rubygems-integration/3.1.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.1.0 ruby3.1 -e gem\ \"crb-blast\" ┌──────────────────────────────────────────────────────────────────────────────┐ │ Run tests for ruby3.1 from debian/ruby-tests.rake │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.1.0:/var/lib/gems/3.1.0:/usr/local/lib/ruby/gems/3.1.0:/usr/lib/ruby/gems/3.1.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.1.0:/usr/share/rubygems-integration/3.1.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.1.0 ruby3.1 -S rake --rakelibdir /gem2deb-nonexistent -f debian/ruby-tests.rake /usr/bin/ruby3.1 -w -I"test" /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader.rb "test/test_test.rb" "test/test_bin.rb" "test/test_test.rb" "test/test_test2.rb" "test/test_test3.rb" -v /usr/lib/ruby/vendor_ruby/fixwhich.rb:3: warning: assigned but unused variable - e /usr/lib/ruby/vendor_ruby/pathname2.rb:211: warning: method redefined; discarding old children /usr/share/rubygems-integration/all/gems/facade-1.2.1/lib/facade.rb:40: warning: previous definition of children was here /usr/lib/ruby/vendor_ruby/threach.rb:7: warning: `*' interpreted as argument prefix /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:29: warning: assigned but unused variable - blaster /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:45: warning: assigned but unused variable - dbs /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:46: warning: assigned but unused variable - run /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:47: warning: assigned but unused variable - load Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: test: crb-blast should add secondary hits. : .: (0.502534) test: crb-blast should break input file into no more pieces than there are sequences. : .: (0.493176) test: crb-blast should break input file into pieces. :.: (0.481464) test: crb-blast should find reciprocals. : .: (0.486961) test: crb-blast should get non reciprocal hits. : .: (0.487108) test: crb-blast should load output should check if the databases exist. : .: (0.486745) test: crb-blast should run blast should check if the databases exist yet. : .: (0.497002) test: crb-blast should setup2 should run ok. : .: (0.489395) Test3CRBBlast: test: crb-blast should raise error when files don't exist. : .: (0.001101) test: crb-blast should run. : .: (0.529017) test: crb-blast should work for query sequences with pipes. : .: (0.460011) TestBinary: test: crb-blast should run binary. : .: (0.126233) TestCRBBlast: test: crb-blast should check if contig has reciprocal hit. : .: (0.549093) test: crb-blast should determine that the target is a protein sequence. : .: (0.542517) test: crb-blast should find reciprocals. : .: (0.540267) test: crb-blast should get number of reciprocals. : .: (0.547948) test: crb-blast should get query results. : .: (0.560031) test: crb-blast should load outputs. : .: (0.556977) test: crb-blast should not find fake scaffold name. : .: (0.554814) test: crb-blast should output all reciprocal hits. : .: (0.693299) test: crb-blast should run blast. : .: (0.553844) test: crb-blast should setup should run ok. : .: (0.741595) Finished in 10.884782093 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- 2.02 tests/s, 3.86 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ └──────────────────────────────────────────────────────────────────────────────┘ dh_installdocs -O--buildsystem=ruby dh_ruby_fixdocs -O--buildsystem=ruby dh_installchangelogs -O--buildsystem=ruby dh_installman -O--buildsystem=ruby dh_installsystemduser -O--buildsystem=ruby dh_perl -O--buildsystem=ruby dh_link -O--buildsystem=ruby dh_strip_nondeterminism -O--buildsystem=ruby dh_compress -X.rb -O--buildsystem=ruby dh_fixperms -O--buildsystem=ruby dh_missing -O--buildsystem=ruby dh_ruby_fixdepends -O--buildsystem=ruby dh_installdeb -O--buildsystem=ruby dh_gencontrol -O--buildsystem=ruby dpkg-gencontrol: warning: package ruby-crb-blast: substitution variable ${ruby:Versions} used, but is not defined dh_md5sums -O--buildsystem=ruby dh_builddeb -O--buildsystem=ruby dpkg-deb: building package 'ruby-crb-blast' in '../ruby-crb-blast_0.6.9-5_all.deb'. dpkg-genbuildinfo --build=binary -O../ruby-crb-blast_0.6.9-5_amd64.buildinfo dpkg-genchanges --build=binary -O../ruby-crb-blast_0.6.9-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2447439 and its subdirectories I: Current time: Thu Dec 25 10:08:07 -12 2025 I: pbuilder-time-stamp: 1766700487 Thu Dec 25 22:08:07 UTC 2025 I: Signing ./b1/ruby-crb-blast_0.6.9-5_amd64.buildinfo as ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc Thu Dec 25 22:08:07 UTC 2025 I: Signed ./b1/ruby-crb-blast_0.6.9-5_amd64.buildinfo as ./b1/ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc Thu Dec 25 22:08:07 UTC 2025 - build #1 for ruby-crb-blast/trixie/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Thu Dec 25 22:08:07 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-QjXaMwua, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 15:45 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 15:44 b2 -rw------- 1 jenkins jenkins 3313 Nov 22 15:44 rbuildlog.5QrjwZs -rw-r--r-- 1 jenkins jenkins 2166 Aug 21 2023 ruby-crb-blast_0.6.9-5.dsc /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b1: total 128 -rw-r--r-- 1 jenkins jenkins 72364 Nov 22 15:45 build.log -rw-r--r-- 1 jenkins jenkins 5740 Nov 22 15:45 ruby-crb-blast_0.6.9-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2166 Nov 22 15:45 ruby-crb-blast_0.6.9-5.dsc -rw-r--r-- 1 jenkins jenkins 12060 Nov 22 15:45 ruby-crb-blast_0.6.9-5_all.deb -rw-r--r-- 1 jenkins jenkins 8968 Nov 22 15:45 ruby-crb-blast_0.6.9-5_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9850 Nov 22 15:45 ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1634 Nov 22 15:45 ruby-crb-blast_0.6.9-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 1812 Nov 22 15:45 ruby-crb-blast_0.6.9-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b2: total 0 Fri Nov 22 15:45:08 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 10:07:11 -12 2025 I: pbuilder-time-stamp: 1766700431 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ruby-crb-blast_0.6.9-5.dsc] I: copying [./ruby-crb-blast_0.6.9.orig.tar.gz] I: copying [./ruby-crb-blast_0.6.9-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 21 21:53:37 2023 gpgv: using RSA key 8ED6C3F8BAC9DB7FC130A870F823A2729883C97C gpgv: issuer "kanashiro@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ruby-crb-blast_0.6.9-5.dsc: no acceptable signature found dpkg-source: info: extracting ruby-crb-blast in ruby-crb-blast-0.6.9 dpkg-source: info: unpacking ruby-crb-blast_0.6.9.orig.tar.gz dpkg-source: info: unpacking ruby-crb-blast_0.6.9-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_less_threads dpkg-source: info: applying file_existance_rename dpkg-source: info: applying drop-coverage-check dpkg-source: info: applying drop-bindeps-req dpkg-source: info: applying adjust-test dpkg-source: info: applying relax-bio.patch dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2447439/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='aea2fa13650a45a4b4f8d1cdb3d58ed0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2447439' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/pbuilderrc_ZIJn --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b1 --logfile b1/build.log ruby-crb-blast_0.6.9-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2447439/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gem2deb, help2man, ncbi-blast+, rake, ruby-bio, ruby-fixwhich, ruby-shoulda, ruby-threach, ruby-trollop dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gem2deb; however: Package gem2deb is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on rake; however: Package rake is not installed. pbuilder-satisfydepends-dummy depends on ruby-bio; however: Package ruby-bio is not installed. pbuilder-satisfydepends-dummy depends on ruby-fixwhich; however: Package ruby-fixwhich is not installed. pbuilder-satisfydepends-dummy depends on ruby-shoulda; however: Package ruby-shoulda is not installed. pbuilder-satisfydepends-dummy depends on ruby-threach; however: Package ruby-threach is not installed. pbuilder-satisfydepends-dummy depends on ruby-trollop; however: Package ruby-trollop is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} gem2deb{a} gem2deb-test-runner{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} libldap-2.5-0{a} liblmdb0{a} liblocale-gettext-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnpth0t64{a} libnsl2{a} libparams-classify-perl{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libruby{a} libruby3.1t64{a} libsasl2-2{a} libsasl2-modules-db{a} libsub-quote-perl{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} netbase{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} rake{a} readline-common{a} ruby{a} ruby-activesupport{a} ruby-all-dev{a} ruby-bio{a} ruby-concurrent{a} ruby-facade{a} ruby-fixwhich{a} ruby-i18n{a} ruby-net-telnet{a} ruby-pathname2{a} ruby-rubygems{a} ruby-sdbm{a} ruby-shoulda{a} ruby-shoulda-context{a} ruby-shoulda-matchers{a} ruby-threach{a} ruby-trollop{a} ruby-tzinfo{a} ruby-webrick{a} ruby-xmlrpc{a} ruby-zeitwerk{a} ruby3.1{a} ruby3.1-dev{a} rubygems-integration{a} sensible-utils{a} tzdata{a} wdiff{a} The following packages are RECOMMENDED but will NOT be installed: apt-file curl dctrl-tools debian-keyring dput dput-ng dupload equivs fonts-lato gnupg-utils gpg-wks-client hmmer krb5-locales libarchive-cpio-perl libdata-dump-perl libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjs-jquery libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx mafft muscle pristine-tar probcons python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg ruby3.1-doc sim4 strace t-coffee unzip wget zip 0 packages upgraded, 153 newly installed, 0 to remove and 0 not upgraded. Need to get 65.0 MB of archives. After unpacking 265 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libassuan9 amd64 3.0.1-2 [60.6 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 gpgconf amd64 2.2.45-2 [120 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libnpth0t64 amd64 1.6-3.1+b1 [18.2 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 dirmngr amd64 2.2.45-2 [368 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 gnupg-l10n all 2.2.45-2 [705 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 gpg amd64 2.2.45-2 [531 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 pinentry-curses amd64 1.2.1-4+b1 [79.7 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 gpg-agent amd64 2.2.45-2 [251 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 gpgsm amd64 2.2.45-2 [255 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 gnupg all 2.2.45-2 [376 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libfile-touch-perl all 0.12-2 [8816 B] Get: 73 http://deb.debian.org/debian trixie/main amd64 libio-pty-perl amd64 1:1.20-1+b2 [34.3 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libipc-run-perl all 20231003.0-2 [101 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b4 [36.1 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 wdiff amd64 1.2.2-6 [119 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 devscripts all 2.24.3 [1079 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 rubygems-integration all 1.18 [6704 B] Get: 112 http://deb.debian.org/debian trixie/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libruby amd64 1:3.1+nmu1 [4664 B] Get: 116 http://deb.debian.org/debian trixie/main amd64 ruby-sdbm amd64 1.0.0-5+b5 [15.6 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libruby3.1t64 amd64 3.1.2-8.4 [5411 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 ruby3.1 amd64 3.1.2-8.4 [664 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 ruby-rubygems all 3.4.20-1 [309 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 ruby amd64 1:3.1+nmu1 [5584 B] Get: 124 http://deb.debian.org/debian trixie/main amd64 rake all 13.2.1-1 [65.2 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 gem2deb-test-runner amd64 2.2.5 [17.9 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b2 [642 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 ruby3.1-dev amd64 3.1.2-8.4 [1002 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 ruby-all-dev amd64 1:3.1+nmu1 [5672 B] Get: 130 http://deb.debian.org/debian trixie/main amd64 gem2deb amd64 2.2.5 [48.0 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 help2man amd64 1.49.3 [198 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+ amd64 2.16.0+ds-6 [15.2 MB] Get: 140 http://deb.debian.org/debian trixie/main amd64 ruby-concurrent all 1.2.3-4 [290 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 ruby-i18n all 1.14.5-1 [41.4 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 ruby-tzinfo all 2.0.6-1 [66.7 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 ruby-zeitwerk all 2.6.8-1 [43.0 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 ruby-activesupport all 2:6.1.7.3+dfsg-4 [202 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 ruby-bio all 2.0.5-1 [657 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 ruby-facade all 1.2.1-1 [8996 B] Get: 147 http://deb.debian.org/debian trixie/main amd64 ruby-pathname2 all 1.8.2-2 [17.9 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 ruby-fixwhich all 1.0.2-2 [4284 B] Get: 149 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda-context all 2.0.0-2 [17.1 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda-matchers all 4.3.0-2 [72.8 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda all 4.0.0-3 [6352 B] Get: 152 http://deb.debian.org/debian trixie/main amd64 ruby-threach all 0.2.0-2 [5320 B] Get: 153 http://deb.debian.org/debian trixie/main amd64 ruby-trollop all 2.0-2.1 [17.0 kB] Fetched 65.0 MB in 5s (12.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. 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Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21366 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... 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Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... 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Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../024-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../026-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../027-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libassuan9:amd64. Preparing to unpack .../032-libassuan9_3.0.1-2_amd64.deb ... Unpacking libassuan9:amd64 (3.0.1-2) ... Selecting previously unselected package gpgconf. Preparing to unpack .../033-gpgconf_2.2.45-2_amd64.deb ... Unpacking gpgconf (2.2.45-2) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../034-libksba8_1.6.7-2+b1_amd64.deb ... Unpacking libksba8:amd64 (1.6.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../035-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../036-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../037-libldap-2.5-0_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnpth0t64:amd64. Preparing to unpack .../038-libnpth0t64_1.6-3.1+b1_amd64.deb ... Unpacking libnpth0t64:amd64 (1.6-3.1+b1) ... Selecting previously unselected package dirmngr. Preparing to unpack .../039-dirmngr_2.2.45-2_amd64.deb ... 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Unpacking libuv1t64:amd64 (1.48.0-7) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../115-ncbi-data_6.1.20170106+dfsg2-5_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../116-ncbi-blast+_2.16.0+ds-6_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-6) ... Selecting previously unselected package ruby-concurrent. Preparing to unpack .../117-ruby-concurrent_1.2.3-4_all.deb ... Unpacking ruby-concurrent (1.2.3-4) ... Selecting previously unselected package ruby-i18n. Preparing to unpack .../118-ruby-i18n_1.14.5-1_all.deb ... Unpacking ruby-i18n (1.14.5-1) ... Selecting previously unselected package ruby-tzinfo. Preparing to unpack .../119-ruby-tzinfo_2.0.6-1_all.deb ... Unpacking ruby-tzinfo (2.0.6-1) ... Selecting previously unselected package ruby-zeitwerk. Preparing to unpack .../120-ruby-zeitwerk_2.6.8-1_all.deb ... Unpacking ruby-zeitwerk (2.6.8-1) ... 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Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up ruby-facade (1.2.1-1) ... Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libio-pty-perl (1:1.20-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libedit2:amd64 (3.1-20240808-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libuv1t64:amd64 (1.48.0-7) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up ruby-concurrent (1.2.3-4) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 25 22:07:43 UTC 2025. Universal Time is now: Thu Dec 25 22:07:43 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b2) ... Setting up gnupg-l10n (2.2.45-2) ... Setting up libncurses6:amd64 (6.5-2+b1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ... Setting up ruby-i18n (1.14.5-1) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up ruby-webrick (1.8.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ruby-pathname2 (1.8.2-2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libassuan9:amd64 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up ruby-zeitwerk (2.6.8-1) ... Setting up liburi-perl (5.30-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up ruby-bio (2.0.5-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2+b2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up ruby-tzinfo (2.0.6-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up gpgconf (2.2.45-2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.45-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up gpgsm (2.2.45-2) ... Setting up rubygems-integration (1.18) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.45-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up gnupg (2.2.45-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up ncbi-blast+ (2.16.0+ds-6) ... Setting up rake (13.2.1-1) ... Setting up ruby3.1 (3.1.2-8.4) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up ruby-rubygems (3.4.20-1) ... Setting up devscripts (2.24.3) ... Setting up libruby3.1t64:amd64 (3.1.2-8.4) ... Setting up ruby3.1-dev:amd64 (3.1.2-8.4) ... Setting up libruby:amd64 (1:3.1+nmu1) ... Setting up ruby-all-dev:amd64 (1:3.1+nmu1) ... Setting up ruby (1:3.1+nmu1) ... Setting up ruby-threach (0.2.0-2) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b5) ... Setting up ruby-fixwhich (1.0.2-2) ... Setting up ruby-activesupport (2:6.1.7.3+dfsg-4) ... Setting up ruby-shoulda-context (2.0.0-2) ... Setting up ruby-trollop (2.0-2.1) ... Setting up gem2deb-test-runner (2.2.5) ... Setting up ruby-shoulda-matchers (4.3.0-2) ... Setting up gem2deb (2.2.5) ... Setting up ruby-shoulda (4.0.0-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aquila Macedo Costa dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=ruby --with ruby dh_auto_clean -O--buildsystem=ruby dh_ruby --clean W: XS-Ruby-Versions is deprecated, and will be ignored dh_autoreconf_clean -O--buildsystem=ruby dh_clean -O--buildsystem=ruby debian/rules binary dh binary --buildsystem=ruby --with ruby dh_update_autotools_config -O--buildsystem=ruby dh_autoreconf -O--buildsystem=ruby dh_auto_configure -O--buildsystem=ruby dh_ruby --configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/ruby-crb-blast-0.6.9' dh_auto_build dh_ruby --build RUBYLIB=lib help2man --no-info --name='Conditional Reciprocal Best BLAST' \ bin/crb-blast > debian/crb-blast.1 make[1]: Leaving directory '/build/reproducible-path/ruby-crb-blast-0.6.9' dh_auto_test -O--buildsystem=ruby dh_ruby --test create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=ruby dh_prep -O--buildsystem=ruby dh_auto_install --destdir=debian/ruby-crb-blast/ -O--buildsystem=ruby dh_ruby --install /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast ┌──────────────────────────────────────────────────────────────────────────────┐ │ ruby-crb-blast: Install files │ └──────────────────────────────────────────────────────────────────────────────┘ install -d /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin install -D -m755 /build/reproducible-path/ruby-crb-blast-0.6.9/bin/crb-blast /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast install -d /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/cmd.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/cmd.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/crb-blast.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/hit.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/hit.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/version.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/version.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast.rb Rewriting shebang line of /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast ┌──────────────────────────────────────────────────────────────────────────────┐ │ ruby-crb-blast: Install Rubygems integration metadata │ └──────────────────────────────────────────────────────────────────────────────┘ generating gemspec at /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all/specifications/crb-blast-0.6.9.gemspec /usr/bin/ruby3.1 /usr/bin/gem2deb-test-runner ┌──────────────────────────────────────────────────────────────────────────────┐ │ Checking Rubygems dependency resolution on ruby3.1 │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.1.0:/var/lib/gems/3.1.0:/usr/local/lib/ruby/gems/3.1.0:/usr/lib/ruby/gems/3.1.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.1.0:/usr/share/rubygems-integration/3.1.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.1.0 ruby3.1 -e gem\ \"crb-blast\" ┌──────────────────────────────────────────────────────────────────────────────┐ │ Run tests for ruby3.1 from debian/ruby-tests.rake │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.1.0:/var/lib/gems/3.1.0:/usr/local/lib/ruby/gems/3.1.0:/usr/lib/ruby/gems/3.1.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.1.0:/usr/share/rubygems-integration/3.1.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.1.0 ruby3.1 -S rake --rakelibdir /gem2deb-nonexistent -f debian/ruby-tests.rake /usr/bin/ruby3.1 -w -I"test" /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader.rb "test/test_test.rb" "test/test_bin.rb" "test/test_test.rb" "test/test_test2.rb" "test/test_test3.rb" -v /usr/lib/ruby/vendor_ruby/fixwhich.rb:3: warning: assigned but unused variable - e /usr/lib/ruby/vendor_ruby/pathname2.rb:211: warning: method redefined; discarding old children /usr/share/rubygems-integration/all/gems/facade-1.2.1/lib/facade.rb:40: warning: previous definition of children was here /usr/lib/ruby/vendor_ruby/threach.rb:7: warning: `*' interpreted as argument prefix /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:29: warning: assigned but unused variable - blaster /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:45: warning: assigned but unused variable - dbs /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:46: warning: assigned but unused variable - run /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:47: warning: assigned but unused variable - load Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: test: crb-blast should add secondary hits. : .: (0.502534) test: crb-blast should break input file into no more pieces than there are sequences. : .: (0.493176) test: crb-blast should break input file into pieces. :.: (0.481464) test: crb-blast should find reciprocals. : .: (0.486961) test: crb-blast should get non reciprocal hits. : .: (0.487108) test: crb-blast should load output should check if the databases exist. : .: (0.486745) test: crb-blast should run blast should check if the databases exist yet. : .: (0.497002) test: crb-blast should setup2 should run ok. : .: (0.489395) Test3CRBBlast: test: crb-blast should raise error when files don't exist. : .: (0.001101) test: crb-blast should run. : .: (0.529017) test: crb-blast should work for query sequences with pipes. : .: (0.460011) TestBinary: test: crb-blast should run binary. : .: (0.126233) TestCRBBlast: test: crb-blast should check if contig has reciprocal hit. : .: (0.549093) test: crb-blast should determine that the target is a protein sequence. : .: (0.542517) test: crb-blast should find reciprocals. : .: (0.540267) test: crb-blast should get number of reciprocals. : .: (0.547948) test: crb-blast should get query results. : .: (0.560031) test: crb-blast should load outputs. : .: (0.556977) test: crb-blast should not find fake scaffold name. : .: (0.554814) test: crb-blast should output all reciprocal hits. : .: (0.693299) test: crb-blast should run blast. : .: (0.553844) test: crb-blast should setup should run ok. : .: (0.741595) Finished in 10.884782093 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- 2.02 tests/s, 3.86 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ └──────────────────────────────────────────────────────────────────────────────┘ dh_installdocs -O--buildsystem=ruby dh_ruby_fixdocs -O--buildsystem=ruby dh_installchangelogs -O--buildsystem=ruby dh_installman -O--buildsystem=ruby dh_installsystemduser -O--buildsystem=ruby dh_perl -O--buildsystem=ruby dh_link -O--buildsystem=ruby dh_strip_nondeterminism -O--buildsystem=ruby dh_compress -X.rb -O--buildsystem=ruby dh_fixperms -O--buildsystem=ruby dh_missing -O--buildsystem=ruby dh_ruby_fixdepends -O--buildsystem=ruby dh_installdeb -O--buildsystem=ruby dh_gencontrol -O--buildsystem=ruby dpkg-gencontrol: warning: package ruby-crb-blast: substitution variable ${ruby:Versions} used, but is not defined dh_md5sums -O--buildsystem=ruby dh_builddeb -O--buildsystem=ruby dpkg-deb: building package 'ruby-crb-blast' in '../ruby-crb-blast_0.6.9-5_all.deb'. dpkg-genbuildinfo --build=binary -O../ruby-crb-blast_0.6.9-5_amd64.buildinfo dpkg-genchanges --build=binary -O../ruby-crb-blast_0.6.9-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2447439 and its subdirectories I: Current time: Thu Dec 25 10:08:07 -12 2025 I: pbuilder-time-stamp: 1766700487 Fri Nov 22 15:45:08 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Fri Nov 22 15:45:08 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Fri Nov 22 15:45:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Nov 22 15:45:08 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-KrAD6f' ==================================================================================== Fri Nov 22 15:45:09 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 ruby-crb-blast trixie /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6 0.6.9-5" as arguments. Fri Nov 22 15:45:10 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-lourPCuh" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 15:45:10 UTC 2024 I: Downloading source for trixie/ruby-crb-blast=0.6.9-5 Reading package lists... NOTICE: 'ruby-crb-blast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/ruby-team/ruby-crb-blast.git Please use: git clone https://salsa.debian.org/ruby-team/ruby-crb-blast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 45.1 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (dsc) [2166 B] Get:2 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (tar) [37.2 kB] Get:3 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (diff) [5740 B] Fetched 45.1 kB in 0s (1205 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ruby-crb-blast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/ruby-team/ruby-crb-blast.git Please use: git clone https://salsa.debian.org/ruby-team/ruby-crb-blast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 45.1 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (dsc) [2166 B] Get:2 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (tar) [37.2 kB] Get:3 http://deb.debian.org/debian trixie/main ruby-crb-blast 0.6.9-5 (diff) [5740 B] Fetched 45.1 kB in 0s (1205 kB/s) Download complete and in download only mode ============================================================================= Re-Building ruby-crb-blast in trixie on amd64 on ionos11-amd64 now. Date: Fri Nov 22 15:45:10 UTC 2024 Date UTC: Fri Nov 22 15:45:10 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/pbuilderrc_FjM4 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' ruby-crb-blast = debian-installer -o ruby-crb-blast = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' ruby-crb-blast = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/pbuilderrc_FjM4 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b2 --logfile b2/build.log ruby-crb-blast_0.6.9-5.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 23 05:45:11 +14 2024 I: pbuilder-time-stamp: 1732290311 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ruby-crb-blast_0.6.9-5.dsc] I: copying [./ruby-crb-blast_0.6.9.orig.tar.gz] I: copying [./ruby-crb-blast_0.6.9-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 21 21:53:37 2023 gpgv: using RSA key 8ED6C3F8BAC9DB7FC130A870F823A2729883C97C gpgv: issuer "kanashiro@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ruby-crb-blast_0.6.9-5.dsc: no acceptable signature found dpkg-source: info: extracting ruby-crb-blast in ruby-crb-blast-0.6.9 dpkg-source: info: unpacking ruby-crb-blast_0.6.9.orig.tar.gz dpkg-source: info: unpacking ruby-crb-blast_0.6.9-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_less_threads dpkg-source: info: applying file_existance_rename dpkg-source: info: applying drop-coverage-check dpkg-source: info: applying drop-bindeps-req dpkg-source: info: applying adjust-test dpkg-source: info: applying relax-bio.patch dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 22 15:45 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=0d7328e3519c4af3a1a20378b0b642ea LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2907796 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/pbuilderrc_FjM4 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b2 --logfile b2/build.log ruby-crb-blast_0.6.9-5.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gem2deb, help2man, ncbi-blast+, rake, ruby-bio, ruby-fixwhich, ruby-shoulda, ruby-threach, ruby-trollop dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gem2deb; however: Package gem2deb is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on rake; however: Package rake is not installed. pbuilder-satisfydepends-dummy depends on ruby-bio; however: Package ruby-bio is not installed. pbuilder-satisfydepends-dummy depends on ruby-fixwhich; however: Package ruby-fixwhich is not installed. pbuilder-satisfydepends-dummy depends on ruby-shoulda; however: Package ruby-shoulda is not installed. pbuilder-satisfydepends-dummy depends on ruby-threach; however: Package ruby-threach is not installed. pbuilder-satisfydepends-dummy depends on ruby-trollop; however: Package ruby-trollop is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} gem2deb{a} gem2deb-test-runner{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libedit2{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} libldap-2.5-0{a} liblmdb0{a} liblocale-gettext-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnpth0t64{a} libnsl2{a} libparams-classify-perl{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libruby{a} libruby3.1t64{a} libsasl2-2{a} libsasl2-modules-db{a} libsub-quote-perl{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} netbase{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} rake{a} readline-common{a} ruby{a} ruby-activesupport{a} ruby-all-dev{a} ruby-bio{a} ruby-concurrent{a} ruby-facade{a} ruby-fixwhich{a} ruby-i18n{a} ruby-net-telnet{a} ruby-pathname2{a} ruby-rubygems{a} ruby-sdbm{a} ruby-shoulda{a} ruby-shoulda-context{a} ruby-shoulda-matchers{a} ruby-threach{a} ruby-trollop{a} ruby-tzinfo{a} ruby-webrick{a} ruby-xmlrpc{a} ruby-zeitwerk{a} ruby3.1{a} ruby3.1-dev{a} rubygems-integration{a} sensible-utils{a} tzdata{a} wdiff{a} The following packages are RECOMMENDED but will NOT be installed: apt-file curl dctrl-tools debian-keyring dput dput-ng dupload equivs fonts-lato gnupg-utils gpg-wks-client hmmer krb5-locales libarchive-cpio-perl libdata-dump-perl libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjs-jquery libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx mafft muscle pristine-tar probcons python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg ruby3.1-doc sim4 strace t-coffee unzip wget zip 0 packages upgraded, 153 newly installed, 0 to remove and 0 not upgraded. Need to get 65.0 MB of archives. After unpacking 265 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libassuan9 amd64 3.0.1-2 [60.6 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 gpgconf amd64 2.2.45-2 [120 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libnpth0t64 amd64 1.6-3.1+b1 [18.2 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 dirmngr amd64 2.2.45-2 [368 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 gnupg-l10n all 2.2.45-2 [705 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 gpg amd64 2.2.45-2 [531 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 pinentry-curses amd64 1.2.1-4+b1 [79.7 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 gpg-agent amd64 2.2.45-2 [251 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 gpgsm amd64 2.2.45-2 [255 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 gnupg all 2.2.45-2 [376 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libfile-touch-perl all 0.12-2 [8816 B] Get: 73 http://deb.debian.org/debian trixie/main amd64 libio-pty-perl amd64 1:1.20-1+b2 [34.3 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libipc-run-perl all 20231003.0-2 [101 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b4 [36.1 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 wdiff amd64 1.2.2-6 [119 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 devscripts all 2.24.3 [1079 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 rubygems-integration all 1.18 [6704 B] Get: 112 http://deb.debian.org/debian trixie/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libruby amd64 1:3.1+nmu1 [4664 B] Get: 116 http://deb.debian.org/debian trixie/main amd64 ruby-sdbm amd64 1.0.0-5+b5 [15.6 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libruby3.1t64 amd64 3.1.2-8.4 [5411 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 ruby3.1 amd64 3.1.2-8.4 [664 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 ruby-rubygems all 3.4.20-1 [309 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 ruby amd64 1:3.1+nmu1 [5584 B] Get: 124 http://deb.debian.org/debian trixie/main amd64 rake all 13.2.1-1 [65.2 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 gem2deb-test-runner amd64 2.2.5 [17.9 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b2 [642 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 ruby3.1-dev amd64 3.1.2-8.4 [1002 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 ruby-all-dev amd64 1:3.1+nmu1 [5672 B] Get: 130 http://deb.debian.org/debian trixie/main amd64 gem2deb amd64 2.2.5 [48.0 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 help2man amd64 1.49.3 [198 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+ amd64 2.16.0+ds-6 [15.2 MB] Get: 140 http://deb.debian.org/debian trixie/main amd64 ruby-concurrent all 1.2.3-4 [290 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 ruby-i18n all 1.14.5-1 [41.4 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 ruby-tzinfo all 2.0.6-1 [66.7 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 ruby-zeitwerk all 2.6.8-1 [43.0 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 ruby-activesupport all 2:6.1.7.3+dfsg-4 [202 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 ruby-bio all 2.0.5-1 [657 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 ruby-facade all 1.2.1-1 [8996 B] Get: 147 http://deb.debian.org/debian trixie/main amd64 ruby-pathname2 all 1.8.2-2 [17.9 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 ruby-fixwhich all 1.0.2-2 [4284 B] Get: 149 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda-context all 2.0.0-2 [17.1 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda-matchers all 4.3.0-2 [72.8 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda all 4.0.0-3 [6352 B] Get: 152 http://deb.debian.org/debian trixie/main amd64 ruby-threach all 0.2.0-2 [5320 B] Get: 153 http://deb.debian.org/debian trixie/main amd64 ruby-trollop all 2.0-2.1 [17.0 kB] Fetched 65.0 MB in 6s (10.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. 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Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... 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Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libassuan9:amd64. Preparing to unpack .../032-libassuan9_3.0.1-2_amd64.deb ... Unpacking libassuan9:amd64 (3.0.1-2) ... Selecting previously unselected package gpgconf. Preparing to unpack .../033-gpgconf_2.2.45-2_amd64.deb ... Unpacking gpgconf (2.2.45-2) ... 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Unpacking dirmngr (2.2.45-2) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../040-gnupg-l10n_2.2.45-2_all.deb ... Unpacking gnupg-l10n (2.2.45-2) ... Selecting previously unselected package gpg. Preparing to unpack .../041-gpg_2.2.45-2_amd64.deb ... Unpacking gpg (2.2.45-2) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../042-pinentry-curses_1.2.1-4+b1_amd64.deb ... Unpacking pinentry-curses (1.2.1-4+b1) ... Selecting previously unselected package gpg-agent. Preparing to unpack .../043-gpg-agent_2.2.45-2_amd64.deb ... Unpacking gpg-agent (2.2.45-2) ... Selecting previously unselected package gpgsm. Preparing to unpack .../044-gpgsm_2.2.45-2_amd64.deb ... Unpacking gpgsm (2.2.45-2) ... Selecting previously unselected package gnupg. Preparing to unpack .../045-gnupg_2.2.45-2_all.deb ... Unpacking gnupg (2.2.45-2) ... Selecting previously unselected package libfile-dirlist-perl. 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Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up ruby-facade (1.2.1-1) ... Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libio-pty-perl (1:1.20-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libedit2:amd64 (3.1-20240808-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libuv1t64:amd64 (1.48.0-7) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up ruby-concurrent (1.2.3-4) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 22 15:48:03 UTC 2024. Universal Time is now: Fri Nov 22 15:48:03 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b2) ... Setting up gnupg-l10n (2.2.45-2) ... Setting up libncurses6:amd64 (6.5-2+b1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ... Setting up ruby-i18n (1.14.5-1) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up ruby-webrick (1.8.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ruby-pathname2 (1.8.2-2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libassuan9:amd64 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up ruby-zeitwerk (2.6.8-1) ... Setting up liburi-perl (5.30-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up ruby-bio (2.0.5-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2+b2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up ruby-tzinfo (2.0.6-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up gpgconf (2.2.45-2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.45-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up gpgsm (2.2.45-2) ... Setting up rubygems-integration (1.18) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.45-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up gnupg (2.2.45-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up ncbi-blast+ (2.16.0+ds-6) ... Setting up rake (13.2.1-1) ... Setting up ruby3.1 (3.1.2-8.4) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up ruby-rubygems (3.4.20-1) ... Setting up devscripts (2.24.3) ... Setting up libruby3.1t64:amd64 (3.1.2-8.4) ... Setting up ruby3.1-dev:amd64 (3.1.2-8.4) ... Setting up libruby:amd64 (1:3.1+nmu1) ... Setting up ruby-all-dev:amd64 (1:3.1+nmu1) ... Setting up ruby (1:3.1+nmu1) ... Setting up ruby-threach (0.2.0-2) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b5) ... Setting up ruby-fixwhich (1.0.2-2) ... Setting up ruby-activesupport (2:6.1.7.3+dfsg-4) ... Setting up ruby-shoulda-context (2.0.0-2) ... Setting up ruby-trollop (2.0-2.1) ... Setting up gem2deb-test-runner (2.2.5) ... Setting up ruby-shoulda-matchers (4.3.0-2) ... Setting up gem2deb (2.2.5) ... Setting up ruby-shoulda (4.0.0-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aquila Macedo Costa dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=ruby --with ruby dh_auto_clean -O--buildsystem=ruby dh_ruby --clean W: XS-Ruby-Versions is deprecated, and will be ignored dh_autoreconf_clean -O--buildsystem=ruby dh_clean -O--buildsystem=ruby debian/rules binary dh binary --buildsystem=ruby --with ruby dh_update_autotools_config -O--buildsystem=ruby dh_autoreconf -O--buildsystem=ruby dh_auto_configure -O--buildsystem=ruby dh_ruby --configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/ruby-crb-blast-0.6.9' dh_auto_build dh_ruby --build RUBYLIB=lib help2man --no-info --name='Conditional Reciprocal Best BLAST' \ bin/crb-blast > debian/crb-blast.1 make[1]: Leaving directory '/build/reproducible-path/ruby-crb-blast-0.6.9' dh_auto_test -O--buildsystem=ruby dh_ruby --test create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=ruby dh_prep -O--buildsystem=ruby dh_auto_install --destdir=debian/ruby-crb-blast/ -O--buildsystem=ruby dh_ruby --install /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast ┌──────────────────────────────────────────────────────────────────────────────┐ │ ruby-crb-blast: Install files │ └──────────────────────────────────────────────────────────────────────────────┘ install -d /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin install -D -m755 /build/reproducible-path/ruby-crb-blast-0.6.9/bin/crb-blast /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast install -d /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/cmd.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/cmd.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/crb-blast.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/hit.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/hit.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/version.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/version.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast.rb Rewriting shebang line of /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast ┌──────────────────────────────────────────────────────────────────────────────┐ │ ruby-crb-blast: Install Rubygems integration metadata │ └──────────────────────────────────────────────────────────────────────────────┘ generating gemspec at /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all/specifications/crb-blast-0.6.9.gemspec /usr/bin/ruby3.1 /usr/bin/gem2deb-test-runner ┌──────────────────────────────────────────────────────────────────────────────┐ │ Checking Rubygems dependency resolution on ruby3.1 │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.1.0:/var/lib/gems/3.1.0:/usr/local/lib/ruby/gems/3.1.0:/usr/lib/ruby/gems/3.1.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.1.0:/usr/share/rubygems-integration/3.1.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.1.0 ruby3.1 -e gem\ \"crb-blast\" ┌──────────────────────────────────────────────────────────────────────────────┐ │ Run tests for ruby3.1 from debian/ruby-tests.rake │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.1.0:/var/lib/gems/3.1.0:/usr/local/lib/ruby/gems/3.1.0:/usr/lib/ruby/gems/3.1.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.1.0:/usr/share/rubygems-integration/3.1.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.1.0 ruby3.1 -S rake --rakelibdir /gem2deb-nonexistent -f debian/ruby-tests.rake /usr/bin/ruby3.1 -w -I"test" /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader.rb "test/test_test.rb" "test/test_bin.rb" "test/test_test.rb" "test/test_test2.rb" "test/test_test3.rb" -v /usr/lib/ruby/vendor_ruby/fixwhich.rb:3: warning: assigned but unused variable - e /usr/lib/ruby/vendor_ruby/pathname2.rb:211: warning: method redefined; discarding old children /usr/share/rubygems-integration/all/gems/facade-1.2.1/lib/facade.rb:40: warning: previous definition of children was here /usr/lib/ruby/vendor_ruby/threach.rb:7: warning: `*' interpreted as argument prefix /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:29: warning: assigned but unused variable - blaster /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:45: warning: assigned but unused variable - dbs /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:46: warning: assigned but unused variable - run /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:47: warning: assigned but unused variable - load Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: test: crb-blast should add secondary hits. : .: (3.261950) test: crb-blast should break input file into no more pieces than there are sequences. : .: (4.025139) test: crb-blast should break input file into pieces. :.: (2.223275) test: crb-blast should find reciprocals. : .: (2.715653) test: crb-blast should get non reciprocal hits. : .: (2.952051) test: crb-blast should load output should check if the databases exist. : .: (2.543700) test: crb-blast should run blast should check if the databases exist yet. : .: (2.877256) test: crb-blast should setup2 should run ok. : .: (2.076767) Test3CRBBlast: test: crb-blast should raise error when files don't exist. : .: (0.011511) test: crb-blast should run. : .: (2.675681) test: crb-blast should work for query sequences with pipes. : .: (2.155095) TestBinary: test: crb-blast should run binary. : .: (0.408183) TestCRBBlast: test: crb-blast should check if contig has reciprocal hit. : .: (2.870289) test: crb-blast should determine that the target is a protein sequence. : .: (2.715180) test: crb-blast should find reciprocals. : .: (3.006102) test: crb-blast should get number of reciprocals. : .: (4.385847) test: crb-blast should get query results. : .: (2.387478) test: crb-blast should load outputs. : .: (3.048961) test: crb-blast should not find fake scaffold name. : .: (2.584480) test: crb-blast should output all reciprocal hits. : .: (3.375759) test: crb-blast should run blast. : .: (4.243677) test: crb-blast should setup should run ok. : .: (3.524534) Finished in 60.10680328 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- 0.37 tests/s, 0.70 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ └──────────────────────────────────────────────────────────────────────────────┘ dh_installdocs -O--buildsystem=ruby dh_ruby_fixdocs -O--buildsystem=ruby dh_installchangelogs -O--buildsystem=ruby dh_installman -O--buildsystem=ruby dh_installsystemduser -O--buildsystem=ruby dh_perl -O--buildsystem=ruby dh_link -O--buildsystem=ruby dh_strip_nondeterminism -O--buildsystem=ruby dh_compress -X.rb -O--buildsystem=ruby dh_fixperms -O--buildsystem=ruby dh_missing -O--buildsystem=ruby dh_ruby_fixdepends -O--buildsystem=ruby dh_installdeb -O--buildsystem=ruby dh_gencontrol -O--buildsystem=ruby dpkg-gencontrol: warning: package ruby-crb-blast: substitution variable ${ruby:Versions} used, but is not defined dh_md5sums -O--buildsystem=ruby dh_builddeb -O--buildsystem=ruby dpkg-deb: building package 'ruby-crb-blast' in '../ruby-crb-blast_0.6.9-5_all.deb'. dpkg-genbuildinfo --build=binary -O../ruby-crb-blast_0.6.9-5_amd64.buildinfo dpkg-genchanges --build=binary -O../ruby-crb-blast_0.6.9-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2907796 and its subdirectories I: Current time: Sat Nov 23 05:50:31 +14 2024 I: pbuilder-time-stamp: 1732290631 + false + set +x Fri Nov 22 15:50:31 UTC 2024 I: Signing ./b2/ruby-crb-blast_0.6.9-5_amd64.buildinfo as ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc Fri Nov 22 15:50:31 UTC 2024 I: Signed ./b2/ruby-crb-blast_0.6.9-5_amd64.buildinfo as ./b2/ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc Fri Nov 22 15:50:31 UTC 2024 - build #2 for ruby-crb-blast/trixie/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Fri Nov 22 15:50:31 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-lourPCuh, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6: total 92 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 15:45 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 15:50 b2 -rw------- 1 jenkins jenkins 75966 Nov 22 15:45 rbuildlog.5QrjwZs -rw-r--r-- 1 jenkins jenkins 2166 Aug 21 2023 ruby-crb-blast_0.6.9-5.dsc /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b1: total 132 -rw-r--r-- 1 jenkins jenkins 72364 Nov 22 15:45 build.log -rw-r--r-- 1 jenkins jenkins 5740 Nov 22 15:45 ruby-crb-blast_0.6.9-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2166 Nov 22 15:45 ruby-crb-blast_0.6.9-5.dsc -rw-r--r-- 1 jenkins jenkins 12060 Nov 22 15:45 ruby-crb-blast_0.6.9-5_all.deb -rw-r--r-- 1 jenkins jenkins 8968 Nov 22 15:45 ruby-crb-blast_0.6.9-5_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9850 Nov 22 15:45 ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1634 Nov 22 15:45 ruby-crb-blast_0.6.9-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 1812 Nov 22 15:45 ruby-crb-blast_0.6.9-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b2: total 132 -rw-r--r-- 1 jenkins jenkins 74282 Nov 22 15:50 build.log -rw-r--r-- 1 jenkins jenkins 5740 Nov 22 15:50 ruby-crb-blast_0.6.9-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2166 Nov 22 15:50 ruby-crb-blast_0.6.9-5.dsc -rw-r--r-- 1 jenkins jenkins 12060 Nov 22 15:50 ruby-crb-blast_0.6.9-5_all.deb -rw-r--r-- 1 jenkins jenkins 8959 Nov 22 15:50 ruby-crb-blast_0.6.9-5_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9841 Nov 22 15:50 ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1634 Nov 22 15:50 ruby-crb-blast_0.6.9-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 1812 Nov 22 15:50 ruby-crb-blast_0.6.9-5_source.changes Fri Nov 22 15:50:32 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Fri Nov 22 15:50:33 UTC 2024 I: ruby-crb-blast_0.6.9-5_amd64.changes: Format: 1.8 Date: Thu, 13 Jul 2023 20:24:04 -0300 Source: ruby-crb-blast Binary: ruby-crb-blast Architecture: all Version: 0.6.9-5 Distribution: unstable Urgency: medium Maintainer: Debian Ruby Team Changed-By: Aquila Macedo Costa Description: ruby-crb-blast - Run conditional reciprocal best blast Changes: ruby-crb-blast (0.6.9-5) unstable; urgency=medium . * Team upload. . [ Debian Janitor ] * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Update watch file format version to 4. * Bump debhelper from old 12 to 13. * Update standards version to 4.5.1, no changes needed. . [ Aquila Macedo ] * d/control: bumped Standards-Version to 4.6.2. * d/watch: updated watch file reference link. * d/control: replaced 'ruby-interpreter' to '${ruby:Depends}'. Checksums-Sha1: d2774a11c33a28250dc0d9f22b23ff3b2d4f5c15 12060 ruby-crb-blast_0.6.9-5_all.deb 0c0139195a70a9cb53e1c28ec8a3138fa53b5114 8968 ruby-crb-blast_0.6.9-5_amd64.buildinfo Checksums-Sha256: 8c392acacfa6d85ffc530ca4ddad037bb78faa2312f835521e2e3c6674a17946 12060 ruby-crb-blast_0.6.9-5_all.deb f19e9f619520c61005e006d64b1c7a0a79691ed79e40f991a597be1cfb80eeff 8968 ruby-crb-blast_0.6.9-5_amd64.buildinfo Files: 74f9ae6b2ab007b720a62cf8533c8d7d 12060 ruby optional ruby-crb-blast_0.6.9-5_all.deb 0133c35c01e7abaa11915f412fc0f647 8968 ruby optional ruby-crb-blast_0.6.9-5_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/ruby-crb-blast_0.6.9-5.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/ruby-crb-blast_0.6.9-5.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/ruby-crb-blast_0.6.9-5.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/ruby-crb-blast_0.6.9-5.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/ruby-crb-blast_0.6.9-5_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/ruby-crb-blast_0.6.9-5.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-22 15:45:08.148979277 +0000 +++ b2/build.log 2024-11-22 15:50:32.566324372 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 25 10:07:11 -12 2025 -I: pbuilder-time-stamp: 1766700431 +I: Current time: Sat Nov 23 05:45:11 +14 2024 +I: pbuilder-time-stamp: 1732290311 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2447439/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 22 15:45 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='aea2fa13650a45a4b4f8d1cdb3d58ed0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2447439' - PS1='# ' - PS2='> ' + INVOCATION_ID=0d7328e3519c4af3a1a20378b0b642ea + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2907796 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/pbuilderrc_ZIJn --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b1 --logfile b1/build.log ruby-crb-blast_0.6.9-5.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/pbuilderrc_FjM4 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b2 --logfile b2/build.log ruby-crb-blast_0.6.9-5.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2447439/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -286,7 +318,7 @@ Get: 151 http://deb.debian.org/debian trixie/main amd64 ruby-shoulda all 4.0.0-3 [6352 B] Get: 152 http://deb.debian.org/debian trixie/main amd64 ruby-threach all 0.2.0-2 [5320 B] Get: 153 http://deb.debian.org/debian trixie/main amd64 ruby-trollop all 2.0-2.1 [17.0 kB] -Fetched 65.0 MB in 5s (12.2 MB/s) +Fetched 65.0 MB in 6s (10.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -802,8 +834,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Dec 25 22:07:43 UTC 2025. -Universal Time is now: Thu Dec 25 22:07:43 UTC 2025. +Local time is now: Fri Nov 22 15:48:03 UTC 2024. +Universal Time is now: Fri Nov 22 15:48:03 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -934,7 +966,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes +I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5 dpkg-buildpackage: info: source distribution unstable @@ -1013,38 +1049,38 @@ Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: - test: crb-blast should add secondary hits. : .: (0.502534) - test: crb-blast should break input file into no more pieces than there are sequences. : .: (0.493176) - test: crb-blast should break input file into pieces. :.: (0.481464) - test: crb-blast should find reciprocals. : .: (0.486961) - test: crb-blast should get non reciprocal hits. : .: (0.487108) - test: crb-blast should load output should check if the databases exist. : .: (0.486745) - test: crb-blast should run blast should check if the databases exist yet. : .: (0.497002) - test: crb-blast should setup2 should run ok. : .: (0.489395) + test: crb-blast should add secondary hits. : .: (3.261950) + test: crb-blast should break input file into no more pieces than there are sequences. : .: (4.025139) + test: crb-blast should break input file into pieces. :.: (2.223275) + test: crb-blast should find reciprocals. : .: (2.715653) + test: crb-blast should get non reciprocal hits. : .: (2.952051) + test: crb-blast should load output should check if the databases exist. : .: (2.543700) + test: crb-blast should run blast should check if the databases exist yet. : .: (2.877256) + test: crb-blast should setup2 should run ok. : .: (2.076767) Test3CRBBlast: - test: crb-blast should raise error when files don't exist. : .: (0.001101) - test: crb-blast should run. : .: (0.529017) - test: crb-blast should work for query sequences with pipes. : .: (0.460011) + test: crb-blast should raise error when files don't exist. : .: (0.011511) + test: crb-blast should run. : .: (2.675681) + test: crb-blast should work for query sequences with pipes. : .: (2.155095) TestBinary: - test: crb-blast should run binary. : .: (0.126233) + test: crb-blast should run binary. : .: (0.408183) TestCRBBlast: - test: crb-blast should check if contig has reciprocal hit. : .: (0.549093) - test: crb-blast should determine that the target is a protein sequence. : .: (0.542517) - test: crb-blast should find reciprocals. : .: (0.540267) - test: crb-blast should get number of reciprocals. : .: (0.547948) - test: crb-blast should get query results. : .: (0.560031) - test: crb-blast should load outputs. : .: (0.556977) - test: crb-blast should not find fake scaffold name. : .: (0.554814) - test: crb-blast should output all reciprocal hits. : .: (0.693299) - test: crb-blast should run blast. : .: (0.553844) - test: crb-blast should setup should run ok. : .: (0.741595) + test: crb-blast should check if contig has reciprocal hit. : .: (2.870289) + test: crb-blast should determine that the target is a protein sequence. : .: (2.715180) + test: crb-blast should find reciprocals. : .: (3.006102) + test: crb-blast should get number of reciprocals. : .: (4.385847) + test: crb-blast should get query results. : .: (2.387478) + test: crb-blast should load outputs. : .: (3.048961) + test: crb-blast should not find fake scaffold name. : .: (2.584480) + test: crb-blast should output all reciprocal hits. : .: (3.375759) + test: crb-blast should run blast. : .: (4.243677) + test: crb-blast should setup should run ok. : .: (3.524534) -Finished in 10.884782093 seconds. +Finished in 60.10680328 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- -2.02 tests/s, 3.86 assertions/s +0.37 tests/s, 0.70 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ @@ -1075,12 +1111,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2907796/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2447439 and its subdirectories -I: Current time: Thu Dec 25 10:08:07 -12 2025 -I: pbuilder-time-stamp: 1766700487 +I: removing directory /srv/workspace/pbuilder/2907796 and its subdirectories +I: Current time: Sat Nov 23 05:50:31 +14 2024 +I: pbuilder-time-stamp: 1732290631 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/ruby-crb-blast_0.6.9-5.diff: 69.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/ruby-crb-blast_0.6.9-5.diff.gz b2/build.log: 81.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.8% -- replaced with stdout Fri Nov 22 15:50:34 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_ruby-crb-blast_trixie_amd64_1732290634 + touch /var/log/reproducible-builds/diffoscope_stamp_ruby-crb-blast_trixie_amd64_1732290634 + RESULT=0 + systemd-run '--description=diffoscope on ruby-crb-blast/0.6.9-5 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_16-39556 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6 --run-session -c jenkins-reproducible-trixie-diffoscope-5d46b42c-2e3e-4d00-a5a2-14ed9856e8f6 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/dbd-tmp-MkVXIp5 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/ruby-crb-blast_0.6.9-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/ruby-crb-blast_0.6.9-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/ruby-crb-blast_0.6.9-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b1/ruby-crb-blast_0.6.9-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b2/ruby-crb-blast_0.6.9-5_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_16-39556.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/ruby-crb-blast_0.6.9-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/ruby-crb-blast_0.6.9-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/ruby-crb-blast_0.6.9-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b1/ruby-crb-blast_0.6.9-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZS9mYhD6/b2/ruby-crb-blast_0.6.9-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.329s) 0.329s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.013s) 0.013s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 624ms CPU time consumed: 625ms _ _ _ _ _ _ __ _ _| |__ _ _ ___ _ __| |__ | |__ | | __ _ ___| |_ | '__| | | | '_ \| | | |_____ / __| '__| '_ \ _____| '_ \| |/ _` / __| __| | | | |_| | |_) | |_| |_____| (__| | | |_) |_____| |_) | | (_| \__ \ |_ |_| \__,_|_.__/ \__, | \___|_| |_.__/ |_.__/|_|\__,_|___/\__| |___/ Fri Nov 22 15:50:35 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 22 15:50:35 UTC 2024 I: ruby-crb-blast from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 15:50:35] INFO: Starting at 2024-11-22 15:50:35.935969 [2024-11-22 15:50:36] INFO: Generating the pages of 1 package(s) [2024-11-22 15:50:36] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/ruby-crb-blast didn't produce a buildlog, even though it has been built. [2024-11-22 15:50:36] INFO: Finished at 2024-11-22 15:50:36.451410, took: 0:00:00.515449 Fri Nov 22 15:50:36 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/ruby-crb-blast.html Fri Nov 22 15:50:36 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 22 15:50:36 UTC 2024 I: Submitting 12K b1/ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc https://buildinfo.debian.net/0c0139195a70a9cb53e1c28ec8a3138fa53b5114/ruby-crb-blast_0.6.9-5_all Fri Nov 22 15:50:37 UTC 2024 I: Submitting 12K b2/ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc https://buildinfo.debian.net/e3aa245c21774e440c4476588f552afefb053c2a/ruby-crb-blast_0.6.9-5_all Fri Nov 22 15:50:38 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 22 15:50:38 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 22 15:50:38 UTC 2024 I: Removing signed ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc files: removed './b1/ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc' removed './b2/ruby-crb-blast_0.6.9-5_amd64.buildinfo.asc' 1732290638 amd64 trixie ruby-crb-blast Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/ruby-crb-blast_0.6.9-5.rbuild.log: 79.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/ruby-crb-blast_0.6.9-5.rbuild.log.gz [2024-11-22 15:50:38] INFO: Starting at 2024-11-22 15:50:38.441352 [2024-11-22 15:50:38] INFO: Generating the pages of 1 package(s) [2024-11-22 15:50:38] INFO: Finished at 2024-11-22 15:50:38.882036, took: 0:00:00.440692 All cleanup done. Fri Nov 22 15:50:38 UTC 2024 - total duration: 0h 6m 32s. Fri Nov 22 15:50:38 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-BC24nkkY, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 6min 35.090s CPU time consumed: 7.398s