Running as unit: rb-build-amd64_16-76443.service; invocation ID: bd0c1b24ea5c4a758ae7876273ed2eb7 ==================================================================================== Fri Oct 31 00:46:02 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_16) on jenkins, called using "ionos15-amd64 ionos11-amd64" as arguments. Fri Oct 31 00:46:02 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-za2Lrhvi" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 00:46:02 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 00:46:02 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-maNCVV' Fri Oct 31 00:46:08 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 00:46:08 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ZHoS8U' ok, let's check if python-mmcif-pdbx is building anywhere yet… ok, python-mmcif-pdbx is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-mmcif-pdbx in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Fri Oct 31 00:46:12 UTC 2025 I: starting to build python-mmcif-pdbx/unstable/amd64 on jenkins on '2025-10-31 00:46' Fri Oct 31 00:46:12 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_16/76443/console.log 1761871572 amd64 unstable python-mmcif-pdbx Fri Oct 31 00:46:12 UTC 2025 I: Downloading source for unstable/python-mmcif-pdbx=2.0.1-2 --2025-10-31 00:46:12-- http://deb.debian.org/debian/pool/main/p/python-mmcif-pdbx/python-mmcif-pdbx_2.0.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2298 (2.2K) [text/prs.lines.tag] Saving to: ‘python-mmcif-pdbx_2.0.1-2.dsc’ 0K .. 100% 279M=0s 2025-10-31 00:46:12 (279 MB/s) - ‘python-mmcif-pdbx_2.0.1-2.dsc’ saved [2298/2298] --2025-10-31 00:46:12-- http://deb.debian.org/debian/pool/main/p/python-mmcif-pdbx/python-mmcif-pdbx_2.0.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2298 (2.2K) [text/prs.lines.tag] Saving to: ‘python-mmcif-pdbx_2.0.1-2.dsc’ 0K .. 100% 279M=0s 2025-10-31 00:46:12 (279 MB/s) - ‘python-mmcif-pdbx_2.0.1-2.dsc’ saved [2298/2298] Fri Oct 31 00:46:12 UTC 2025 I: python-mmcif-pdbx_2.0.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-mmcif-pdbx Binary: python-pdbx-doc, python3-pdbx Architecture: all Version: 2.0.1-2 Maintainer: Debian Python Team Uploaders: Andrius Merkys , Homepage: https://github.com/Electrostatics/mmcif_pdbx Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/python-team/packages/python-mmcif-pdbx Vcs-Git: https://salsa.debian.org/python-team/packages/python-mmcif-pdbx.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-sphinxdoc, python3-all, python3-pytest , python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme Package-List: python-pdbx-doc deb doc optional arch=all python3-pdbx deb python optional arch=all Checksums-Sha1: 67fdd256d1f4d3146e093c73539ff9e050c2c9c5 2149838 python-mmcif-pdbx_2.0.1.orig.tar.gz f467448f0bfab81b8a13d3d44432081b37935671 3228 python-mmcif-pdbx_2.0.1-2.debian.tar.xz Checksums-Sha256: ad64a02a59d41e0013554ba03153d2ecbcb55579453b49be89c87ed228d0d1b1 2149838 python-mmcif-pdbx_2.0.1.orig.tar.gz e5d15f07c47777b4e50d4dcda22c9d1cf939842e255ea4c08e10a36795c5c197 3228 python-mmcif-pdbx_2.0.1-2.debian.tar.xz Files: 9197231e284cd4e7364a1b513c164eeb 2149838 python-mmcif-pdbx_2.0.1.orig.tar.gz b577969bf4fbe128c82a5ebb9fa62639 3228 python-mmcif-pdbx_2.0.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmIuzX0SHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHQccP/1tyjMIyrLtVmB7rBnXsqQyOXTDW1U8D FyLJfckOFP4zwWZ7F0+o06mbs26zCGXLsGu9HcqksO2IxN2UCc5m+x8Z+8ev834r hX0bK1R7M/tmgSLwSdxymVcGRAknjnFaHI4e7u+xzcwTPEfG2kDM5p6fbxCGq2yn noNN4oZKlxAZilEZm+1Xh61MzlE4cxO1r/nTtjwNydwuOppti6hxWGYUh5UQSUUV fivutjzXPIWOlRkgQeu9xIoo2pMgU+7XelNgIIck6yBft+5PPjsN3HKQ9FGtsung 5y3Kz0KuI08erQGQyZl0fSR8rfOVySSlRuLbYkIDn7m3aff6v061WyGnNEofllbV iTxzoCEFP0FlXH9/sClIvwghEBt8cgRZdVeE294a9C7/vIBjhLCsQTqWTJZvah8u vUzN/6R0BEDmO8lQ93Glq9+eJkPsgpRbJVuOGzQ7bZVPVCrBRltRL+NUpuhh0FQH /+stpOnxO8MVVkE9415KaO9Vp3QKSNBI+DR7dJ/tp9M/8YV/e2ZFRjbtFmRI9Oy5 BcZj+Nl5Szrqlkr1UFqH4erg7OuDnEtmqH2lAzeIf+D8dMkiYpFQbduRblfBNA+y M/jYGRqICNkEV1mTMiLRmmaS2ZgHZPQmcCLksIUc0tKtyNpebjARn11CbLxZU4Zq UsnHaUBs+IIv =9Fwo -----END PGP SIGNATURE----- Fri Oct 31 00:46:12 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 00:46:12 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Oct 31 00:46:12 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Oct 31 00:46:12 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 00:46:12 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-FapvUs' ==================================================================================== Fri Oct 31 00:46:21 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 python-mmcif-pdbx unstable /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D 2.0.1-2" as arguments. Fri Oct 31 00:46:21 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-hb1yiB9D" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 00:46:21 UTC 2025 I: Downloading source for unstable/python-mmcif-pdbx=2.0.1-2 Reading package lists... NOTICE: 'python-mmcif-pdbx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-mmcif-pdbx.git Please use: git clone https://salsa.debian.org/python-team/packages/python-mmcif-pdbx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2155 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (dsc) [2298 B] Get:2 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (tar) [2150 kB] Get:3 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (diff) [3228 B] Fetched 2155 kB in 0s (48.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-mmcif-pdbx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-mmcif-pdbx.git Please use: git clone https://salsa.debian.org/python-team/packages/python-mmcif-pdbx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2155 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (dsc) [2298 B] Get:2 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (tar) [2150 kB] Get:3 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (diff) [3228 B] Fetched 2155 kB in 0s (48.3 MB/s) Download complete and in download only mode ============================================================================= Building python-mmcif-pdbx in unstable on amd64 on ionos15-amd64 now. Date: Fri Oct 31 00:46:21 UTC 2025 Date UTC: Fri Oct 31 00:46:21 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 12:46:22 -12 2025 I: pbuilder-time-stamp: 1761871582 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] tar: ./build: time stamp 2026-11-30 02:06:57 is 34176032.530243665 s in the future tar: ./dev/ptmx: time stamp 2026-11-30 02:05:29 is 34175944.530031078 s in the future tar: ./dev/zero: time stamp 2026-11-30 02:05:29 is 34175944.529898276 s in the future tar: ./dev/null: time stamp 2026-11-30 02:05:29 is 34175944.529846113 s in the future tar: ./dev/console: time stamp 2026-11-30 02:05:29 is 34175944.529768956 s in the future tar: ./dev/random: time stamp 2026-11-30 02:05:29 is 34175944.529720158 s in the future tar: ./dev/full: time stamp 2026-11-30 02:05:29 is 34175944.529674405 s in the future tar: ./dev/pts: time stamp 2026-11-30 02:05:29 is 34175944.529597705 s in the future tar: ./dev/tty: time stamp 2026-11-30 02:05:29 is 34175944.529508659 s in the future tar: ./dev/urandom: time stamp 2026-11-30 02:05:29 is 34175944.529459959 s in the future tar: ./etc/terminfo: time stamp 2026-11-30 02:06:21 is 34175996.529156878 s in the future tar: ./etc/opt: time stamp 2026-11-30 02:05:59 is 34175974.527672901 s in the future tar: ./etc/security/opasswd: time stamp 2026-11-30 02:06:23 is 34175998.527274993 s in the future tar: ./etc/security: time stamp 2026-11-30 02:06:23 is 34175998.526939248 s in the future tar: ./etc/shadow: time stamp 2026-11-30 02:07:05 is 34176040.526718507 s in the future tar: ./etc/cron.daily: time stamp 2026-11-30 02:07:14 is 34176049.526476321 s in the future tar: ./etc/apt/sources.list.d/reproducible.list: time stamp 2026-11-30 02:07:48 is 34176083.526323551 s in the future tar: ./etc/apt/sources.list.d: time stamp 2026-11-30 02:07:48 is 34176083.526291912 s in the future tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2026-11-30 02:07:30 is 34176065.526115302 s in the future tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2026-11-30 02:06:57 is 34176032.526047608 s in the future tar: ./etc/apt/apt.conf.d: time stamp 2026-11-30 02:07:30 is 34176065.525920922 s in the future tar: ./etc/apt/preferences.d/reproducible: time stamp 2026-11-30 02:07:48 is 34176083.525810468 s in the future tar: ./etc/apt/preferences.d: time stamp 2026-11-30 02:07:48 is 34176083.525778748 s in the future tar: ./etc/apt/sources.list: time stamp 2026-11-30 02:07:31 is 34176066.525711127 s in the future tar: ./etc/apt/trusted.gpg.d/reproducible.asc: time stamp 2026-11-30 02:07:48 is 34176083.525538524 s in the future tar: ./etc/apt/trusted.gpg.d: time stamp 2026-11-30 02:07:48 is 34176083.525123437 s in the future tar: ./etc/apt: time stamp 2026-11-30 02:07:31 is 34176066.525033736 s in the future tar: ./etc/fstab: time stamp 2026-11-30 02:05:29 is 34175944.524954335 s in the future tar: ./etc/update-motd.d: time stamp 2026-11-30 02:06:21 is 34175996.524512182 s in the future tar: ./etc/ld.so.conf.d: time stamp 2026-11-30 02:07:14 is 34176049.524253007 s in the future tar: ./etc/gshadow: time stamp 2026-11-30 02:07:05 is 34176040.524095164 s in the future tar: ./etc/shells: time stamp 2026-11-30 02:06:21 is 34175996.524000876 s in the future tar: ./etc/default: time stamp 2026-11-30 02:07:05 is 34176040.523664071 s in the future tar: ./etc/group: time stamp 2026-11-30 02:07:05 is 34176040.523531399 s in the future tar: ./etc/ld.so.cache: time stamp 2026-11-30 03:34:26 is 34181281.52334111 s in the future tar: ./etc/.pwd.lock: time stamp 2026-11-30 02:07:05 is 34176040.523222046 s in the future tar: ./etc/skel: time stamp 2026-11-30 02:06:22 is 34175997.523018667 s in the future tar: ./etc/group-: time stamp 2026-11-30 02:05:33 is 34175948.522890211 s in the future tar: ./etc/subuid: time stamp 2026-11-30 02:05:41 is 34175956.522835208 s in the future tar: ./etc/logrotate.d: time stamp 2026-11-30 02:07:14 is 34176049.52227556 s in the future tar: ./etc/pam.d/common-session: time stamp 2026-11-30 02:06:23 is 34175998.522116588 s in the future tar: ./etc/pam.d/common-password: time stamp 2026-11-30 02:06:23 is 34175998.522004503 s in the future tar: ./etc/pam.d/common-account: time stamp 2026-11-30 02:06:23 is 34175998.521890478 s in the future tar: ./etc/pam.d/common-session-noninteractive: time stamp 2026-11-30 02:06:23 is 34175998.521755296 s in the future tar: ./etc/pam.d/common-auth: time stamp 2026-11-30 02:06:23 is 34175998.521640566 s in the future tar: ./etc/pam.d: time stamp 2026-11-30 02:07:05 is 34176040.521409712 s in the future tar: ./etc/subgid: time stamp 2026-11-30 02:05:41 is 34175956.521303426 s in the future tar: ./etc/passwd-: time stamp 2026-11-30 02:05:33 is 34175948.521201035 s in the future tar: ./etc/environment: time stamp 2026-11-30 02:06:23 is 34175998.521091777 s in the future tar: ./etc/perl/Net: time stamp 2026-11-30 02:06:42 is 34176017.520900488 s in the future tar: ./etc/perl: time stamp 2026-11-30 02:06:37 is 34176012.520874613 s in the future tar: ./etc/selinux: time stamp 2026-11-30 02:07:04 is 34176039.520705844 s in the future tar: ./etc/kernel: time stamp 2026-11-30 02:06:24 is 34175999.520556932 s in the future tar: ./etc/passwd: time stamp 2026-11-30 02:07:05 is 34176040.520491961 s in the future tar: ./etc/dpkg/origins/default: time stamp 2026-11-30 02:05:59 is 34175974.520307904 s in the future tar: ./etc/dpkg/origins: time stamp 2026-11-30 02:06:21 is 34175996.520225832 s in the future tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2026-11-30 02:07:31 is 34176066.519985422 s in the future tar: ./etc/dpkg/dpkg.cfg.d: time stamp 2026-11-30 02:07:31 is 34176066.519948345 s in the future tar: ./etc/dpkg: time stamp 2026-11-30 02:06:42 is 34176017.51992872 s in the future tar: ./media: time stamp 2026-11-30 02:05:59 is 34175974.519603448 s in the future tar: ./mnt: time stamp 2026-11-30 02:05:59 is 34175974.51952944 s in the future tar: ./opt: time stamp 2026-11-30 02:05:59 is 34175974.519454063 s in the future tar: ./root: time stamp 2026-11-30 02:05:59 is 34175974.519226375 s in the future tar: ./run/lock: time stamp 2026-11-30 02:05:59 is 34175974.519073872 s in the future tar: ./srv: time stamp 2026-11-30 02:05:59 is 34175974.518954771 s in the future tar: ./usr/share/base-passwd: time stamp 2026-11-30 02:06:03 is 34175978.518585665 s in the future tar: ./usr/share/terminfo/a: time stamp 2026-11-30 02:06:18 is 34175993.518414973 s in the future tar: ./usr/share/terminfo/p: time stamp 2026-11-30 02:06:18 is 34175993.518283755 s in the future tar: ./usr/share/terminfo/E: time stamp 2026-11-30 02:06:18 is 34175993.518132816 s in the future tar: ./usr/share/terminfo/s: time stamp 2026-11-30 02:06:18 is 34175993.517774038 s in the future tar: ./usr/share/terminfo/h: time stamp 2026-11-30 02:06:18 is 34175993.517646057 s in the future tar: ./usr/share/terminfo/d: time stamp 2026-11-30 02:06:18 is 34175993.517517179 s in the future tar: ./usr/share/terminfo/l: time stamp 2026-11-30 02:06:18 is 34175993.51738452 s in the future tar: ./usr/share/terminfo/m: time stamp 2026-11-30 02:06:18 is 34175993.517120279 s in the future tar: ./usr/share/terminfo/c: time stamp 2026-11-30 02:06:18 is 34175993.516937698 s in the future tar: ./usr/share/terminfo/v: time stamp 2026-11-30 02:06:18 is 34175993.516691208 s in the future tar: ./usr/share/terminfo/w: time stamp 2026-11-30 02:06:18 is 34175993.516497941 s in the future tar: ./usr/share/terminfo/x: time stamp 2026-11-30 02:06:18 is 34175993.516087174 s in the future tar: ./usr/share/terminfo/t: time stamp 2026-11-30 02:06:18 is 34175993.515926546 s in the future tar: ./usr/share/terminfo/r: time stamp 2026-11-30 02:06:18 is 34175993.515647088 s in the future tar: ./usr/share/gdb/auto-load/usr/lib/x86_64-linux-gnu: time stamp 2026-11-30 02:06:36 is 34176011.515379197 s in the future tar: ./usr/share/gdb/auto-load/usr/lib: time stamp 2026-11-30 02:06:33 is 34176008.515351197 s in the future tar: ./usr/share/gdb/auto-load/usr: time stamp 2026-11-30 02:06:33 is 34176008.515333218 s in the future tar: ./usr/share/gdb/auto-load/lib/x86_64-linux-gnu: time stamp 2026-11-30 02:06:32 is 34176007.515137012 s in the future tar: ./usr/share/gdb/auto-load/lib: time stamp 2026-11-30 02:06:31 is 34176006.515111791 s in the future tar: ./usr/share/gdb/auto-load: time stamp 2026-11-30 02:06:33 is 34176008.515093859 s in the future tar: ./usr/share/gdb: time stamp 2026-11-30 02:06:31 is 34176006.515077164 s in the future tar: ./usr/share/info: time stamp 2026-11-30 02:06:20 is 34175995.510780354 s in the future tar: ./usr/share/build-essential: time stamp 2026-11-30 02:06:25 is 34176000.510604314 s in the future tar: ./usr/share/libc-bin: time stamp 2026-11-30 02:06:14 is 34175989.510468135 s in the future tar: ./usr/share/zsh/vendor-completions: time stamp 2026-11-30 02:06:39 is 34176014.510262886 s in the future tar: ./usr/share/zsh: time stamp 2026-11-30 02:06:26 is 34176001.510236096 s in the future tar: ./usr/share/apt: time stamp 2026-11-30 02:06:24 is 34175999.510123188 s in the future tar: ./usr/share/man/fr/man7: time stamp 2026-11-30 02:06:26 is 34176001.509878721 s in the future tar: ./usr/share/man/fr/man5: time stamp 2026-11-30 02:07:05 is 34176040.504429267 s in the future tar: ./usr/share/man/fi/man1: time stamp 2026-11-30 02:07:05 is 34176040.50410465 s in the future tar: ./usr/share/man/id/man8: time stamp 2026-11-30 02:07:05 is 34176040.503483824 s in the future tar: ./usr/share/man/id/man1: time stamp 2026-11-30 02:07:05 is 34176040.503338327 s in the future tar: ./usr/share/man/id: time stamp 2026-11-30 02:07:04 is 34176039.503309521 s in the future tar: ./usr/share/man/uk/man8: time stamp 2026-11-30 02:07:05 is 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34175973.820347113 s in the future tar: ./usr/share/locale/id: time stamp 2026-11-30 02:05:27 is 34175933.820324019 s in the future tar: ./usr/share/locale/fi/LC_TIME: time stamp 2026-11-30 02:06:07 is 34175973.820298553 s in the future tar: ./usr/share/locale/fi: time stamp 2026-11-30 02:05:27 is 34175933.820275192 s in the future tar: ./usr/share/locale/fr/LC_TIME: time stamp 2026-11-30 02:06:07 is 34175973.820249082 s in the future tar: ./usr/share/locale/fr: time stamp 2026-11-30 02:05:27 is 34175933.820227296 s in the future tar: ./usr/share/locale: time stamp 2026-11-30 02:07:05 is 34176031.820206678 s in the future tar: ./usr/share/man/sl/man1: time stamp 2026-11-30 02:06:21 is 34175987.820179213 s in the future tar: ./usr/share/man/cs/man8: time stamp 2026-11-30 02:07:14 is 34176040.820135014 s in the future tar: ./usr/share/man/cs: time stamp 2026-11-30 02:07:04 is 34176030.820110353 s in the future tar: ./usr/share/man/it/man1: time stamp 2026-11-30 02:07:06 is 34176032.820083963 s in the future tar: ./usr/share/man/it/man8: time stamp 2026-11-30 02:07:14 is 34176040.82005894 s in the future tar: ./usr/share/man/it: time stamp 2026-11-30 02:05:27 is 34175933.820035423 s in the future tar: ./usr/share/man/ja/man1: time stamp 2026-11-30 02:07:05 is 34176031.820010896 s in the future tar: ./usr/share/man/ja/man8: time stamp 2026-11-30 02:07:14 is 34176040.819987617 s in the future tar: ./usr/share/man/ja: time stamp 2026-11-30 02:05:27 is 34175933.819965229 s in the future tar: ./usr/share/man/gl/man8: time stamp 2026-11-30 02:07:14 is 34176040.819940729 s in the future tar: ./usr/share/man/gl: time stamp 2026-11-30 02:07:06 is 34176032.819916638 s in the future tar: ./usr/share/man/pl/man1: time stamp 2026-11-30 02:07:05 is 34176031.819894252 s in the future tar: ./usr/share/man/pl/man8: time stamp 2026-11-30 02:07:14 is 34176040.819869482 s in the future tar: ./usr/share/man/pl: time stamp 2026-11-30 02:05:27 is 34175933.819846897 s in the future tar: ./usr/share/man/man1: time stamp 2026-11-30 02:07:14 is 34176040.819624804 s in the future tar: ./usr/share/man/man8: time stamp 2026-11-30 02:07:14 is 34176040.819549926 s in the future tar: ./usr/share/man/de/man1: time stamp 2026-11-30 02:07:07 is 34176033.81952084 s in the future tar: ./usr/share/man/de/man8: time stamp 2026-11-30 02:07:14 is 34176040.819500745 s in the future tar: ./usr/share/man/de: time stamp 2026-11-30 02:06:24 is 34175990.819480969 s in the future tar: ./usr/share/man/es/man1: time stamp 2026-11-30 02:07:14 is 34176040.819460027 s in the future tar: ./usr/share/man/es/man8: time stamp 2026-11-30 02:07:14 is 34176040.819405542 s in the future tar: ./usr/share/man/es: time stamp 2026-11-30 02:05:27 is 34175933.819383515 s in the future tar: ./usr/share/man/sv/man1: time stamp 2026-11-30 02:07:14 is 34176040.819361504 s in the future tar: ./usr/share/man/sv: time stamp 2026-11-30 02:06:26 is 34175992.819340287 s in the future tar: ./usr/share/man/man7: time stamp 2026-11-30 02:06:26 is 34175992.81931878 s in the future tar: ./usr/share/man/fi/man8: time stamp 2026-11-30 02:07:14 is 34176040.819299666 s in the future tar: ./usr/share/man/fi: time stamp 2026-11-30 02:07:06 is 34176032.819279895 s in the future tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 02:07:14 is 34176040.819220157 s in the future tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 02:07:14 is 34176040.819195563 s in the future tar: ./usr/share/man/fr: time stamp 2026-11-30 02:06:24 is 34175990.819175022 s in the future tar: ./usr/share/man: time stamp 2026-11-30 02:07:06 is 34176032.819155428 s in the future tar: ./usr/share: time stamp 2026-11-30 02:07:07 is 34176033.819134005 s in the future tar: ./usr: time stamp 2026-11-30 02:05:59 is 34175965.81911584 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-30 02:06:42 is 34176008.819047165 s in the future tar: ./etc/systemd/system: time stamp 2026-11-30 02:06:00 is 34175966.819031785 s in the future tar: ./etc/alternatives: time stamp 2026-11-30 02:07:14 is 34176040.819008297 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-mmcif-pdbx_2.0.1-2.dsc] I: copying [./python-mmcif-pdbx_2.0.1.orig.tar.gz] I: copying [./python-mmcif-pdbx_2.0.1-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-mmcif-pdbx_2.0.1-2.dsc: no acceptable signature found dpkg-source: info: extracting python-mmcif-pdbx in python-mmcif-pdbx-2.0.1 dpkg-source: info: unpacking python-mmcif-pdbx_2.0.1.orig.tar.gz dpkg-source: info: unpacking python-mmcif-pdbx_2.0.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/543093/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='52e4be45e12e4142b92a58f327e5b3dd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='543093' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/pbuilderrc_KNyt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b1 --logfile b1/build.log python-mmcif-pdbx_2.0.1-2.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/543093/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, dh-sequence-sphinxdoc, python3-all, python3-pytest, python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-jquery{a} libjs-sphinxdoc{a} libjson-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-requests{a} python3-roman-numerals{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After unpacking 146 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.22.2+dfsg-2 [128 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.22.2+dfsg-2 [432 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 68 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 3.0.3-1 [13.8 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-8 [619 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.2.3-8 [477 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] Fetched 35.5 MB in 1s (26.4 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up fonts-lato (2.015-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-0.3) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up python-babel-localedata (2.17.0-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 31 00:47:24 UTC 2025. Universal Time is now: Fri Oct 31 00:47:24 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-8) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libjson-perl (4.10000-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up openssl (3.5.4-1) ... Setting up readline-common (8.3-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up sphinx-common (8.2.3-8) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (3.0.3-1) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-snowballstemmer (3.0.1-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-roman-numerals (3.1.0-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (2.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.22.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.22.2+dfsg-2) ... Setting up python3-sphinx (8.2.3-8) ... Setting up python3-sphinxcontrib.jquery (4.1-6) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-mmcif-pdbx-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-mmcif-pdbx_2.0.1-2_source.changes dpkg-buildpackage: info: source package python-mmcif-pdbx dpkg-buildpackage: info: source version 2.0.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-mmcif-pdbx-2.0.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf mmcif_pdbx.egg-info make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild --with python3 dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/containers.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/__init__.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/reader.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/writer.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx PYTHONPATH=. python3 -m sphinx -N -bhtml docs build/html Running Sphinx v8.2.3 loading translations [en]... done WARNING: html_static_path entry '_static' does not exist [autosummary] generating autosummary for: api/data.rst, api/errors.rst, api/functions.rst, api/index.rst, api/io.rst, changelog.rst, index.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] api/data reading sources... [ 29%] api/errors reading sources... [ 43%] api/functions reading sources... [ 57%] api/index reading sources... [ 71%] api/io reading sources... [ 86%] changelog reading sources... [100%] index /build/reproducible-path/python-mmcif-pdbx-2.0.1/docs/api/index.rst:8: WARNING: duplicate object description of pdbx, other instance in api/functions, use :no-index: for one of them looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 14%] api/data writing output... [ 29%] api/errors writing output... [ 43%] api/functions writing output... [ 57%] api/index writing output... [ 71%] api/io writing output... [ 86%] changelog writing output... [100%] index generating indices... genindex py-modindex done highlighting module code... [ 20%] pdbx highlighting module code... [ 40%] pdbx.containers highlighting module code... [ 60%] pdbx.errors highlighting module code... [ 80%] pdbx.reader highlighting module code... [100%] pdbx.writer writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 2 warnings. The HTML pages are in build/html. make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_auto_test -- --test-pytest I: pybuild base:311: cd /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 21 items tests/reader_test.py ............s. [ 66%] tests/readwrite_test.py .... [ 85%] tests/test_version.py .. [ 95%] tests/writer_test.py . [100%] ======================== 20 passed, 1 skipped in 2.41s ========================= make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/README.md -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/containers.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/writer.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/reader.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/containers.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__init__.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/reader.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/writer.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/containers.py to containers.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/reader.py to reader.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/writer.py to writer.cpython-313.pyc running install_egg_info running egg_info creating mmcif_pdbx.egg-info writing mmcif_pdbx.egg-info/PKG-INFO writing dependency_links to mmcif_pdbx.egg-info/dependency_links.txt writing top-level names to mmcif_pdbx.egg-info/top_level.txt writing manifest file 'mmcif_pdbx.egg-info/SOURCES.txt' reading manifest file 'mmcif_pdbx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'mmcif_pdbx.egg-info/SOURCES.txt' Copying mmcif_pdbx.egg-info to /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/mmcif_pdbx-2.0.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_installdocs dh_installdocs -p python-pdbx-doc --doc-main-package python3-pdbx build/html make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pdbx-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pdbx-doc' in '../python-pdbx-doc_2.0.1-2_all.deb'. dpkg-deb: building package 'python3-pdbx' in '../python3-pdbx_2.0.1-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-mmcif-pdbx_2.0.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../python-mmcif-pdbx_2.0.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-mmcif-pdbx-2.0.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/543093 and its subdirectories I: Current time: Thu Oct 30 12:47:55 -12 2025 I: pbuilder-time-stamp: 1761871675 Fri Oct 31 00:47:55 UTC 2025 I: Signing ./b1/python-mmcif-pdbx_2.0.1-2_amd64.buildinfo as python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc Fri Oct 31 00:47:55 UTC 2025 I: Signed ./b1/python-mmcif-pdbx_2.0.1-2_amd64.buildinfo as ./b1/python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc Fri Oct 31 00:47:55 UTC 2025 - build #1 for python-mmcif-pdbx/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 00:47:55 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hb1yiB9D, removing. /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 00:47 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 00:46 b2 -rw-rw-r-- 1 jenkins jenkins 2298 Mar 14 2022 python-mmcif-pdbx_2.0.1-2.dsc -rw------- 1 jenkins jenkins 3470 Oct 31 00:46 rbuildlog.x2yJ5QS /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b1: total 428 -rw-r--r-- 1 jenkins jenkins 332679 Oct 31 00:47 build.log -rw-r--r-- 1 jenkins jenkins 3228 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2298 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2.dsc -rw-r--r-- 1 jenkins jenkins 6876 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7758 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1432 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 1262 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2_source.changes -rw-r--r-- 1 jenkins jenkins 46456 Oct 31 00:47 python-pdbx-doc_2.0.1-2_all.deb -rw-r--r-- 1 jenkins jenkins 17456 Oct 31 00:47 python3-pdbx_2.0.1-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b2: total 0 Fri Oct 31 00:47:57 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 12:46:22 -12 2025 I: pbuilder-time-stamp: 1761871582 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] tar: ./build: time stamp 2026-11-30 02:06:57 is 34176032.530243665 s in the future tar: ./dev/ptmx: time stamp 2026-11-30 02:05:29 is 34175944.530031078 s in the future tar: ./dev/zero: time stamp 2026-11-30 02:05:29 is 34175944.529898276 s in the future tar: ./dev/null: time stamp 2026-11-30 02:05:29 is 34175944.529846113 s in the future tar: ./dev/console: time stamp 2026-11-30 02:05:29 is 34175944.529768956 s in the future tar: ./dev/random: time stamp 2026-11-30 02:05:29 is 34175944.529720158 s in the future tar: ./dev/full: time stamp 2026-11-30 02:05:29 is 34175944.529674405 s in the future tar: ./dev/pts: time stamp 2026-11-30 02:05:29 is 34175944.529597705 s in the future tar: ./dev/tty: time stamp 2026-11-30 02:05:29 is 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time stamp 2026-11-30 02:06:07 is 34175973.820249082 s in the future tar: ./usr/share/locale/fr: time stamp 2026-11-30 02:05:27 is 34175933.820227296 s in the future tar: ./usr/share/locale: time stamp 2026-11-30 02:07:05 is 34176031.820206678 s in the future tar: ./usr/share/man/sl/man1: time stamp 2026-11-30 02:06:21 is 34175987.820179213 s in the future tar: ./usr/share/man/cs/man8: time stamp 2026-11-30 02:07:14 is 34176040.820135014 s in the future tar: ./usr/share/man/cs: time stamp 2026-11-30 02:07:04 is 34176030.820110353 s in the future tar: ./usr/share/man/it/man1: time stamp 2026-11-30 02:07:06 is 34176032.820083963 s in the future tar: ./usr/share/man/it/man8: time stamp 2026-11-30 02:07:14 is 34176040.82005894 s in the future tar: ./usr/share/man/it: time stamp 2026-11-30 02:05:27 is 34175933.820035423 s in the future tar: ./usr/share/man/ja/man1: time stamp 2026-11-30 02:07:05 is 34176031.820010896 s in the future tar: ./usr/share/man/ja/man8: time stamp 2026-11-30 02:07:14 is 34176040.819987617 s in the future tar: ./usr/share/man/ja: time stamp 2026-11-30 02:05:27 is 34175933.819965229 s in the future tar: ./usr/share/man/gl/man8: time stamp 2026-11-30 02:07:14 is 34176040.819940729 s in the future tar: ./usr/share/man/gl: time stamp 2026-11-30 02:07:06 is 34176032.819916638 s in the future tar: ./usr/share/man/pl/man1: time stamp 2026-11-30 02:07:05 is 34176031.819894252 s in the future tar: ./usr/share/man/pl/man8: time stamp 2026-11-30 02:07:14 is 34176040.819869482 s in the future tar: ./usr/share/man/pl: time stamp 2026-11-30 02:05:27 is 34175933.819846897 s in the future tar: ./usr/share/man/man1: time stamp 2026-11-30 02:07:14 is 34176040.819624804 s in the future tar: ./usr/share/man/man8: time stamp 2026-11-30 02:07:14 is 34176040.819549926 s in the future tar: ./usr/share/man/de/man1: time stamp 2026-11-30 02:07:07 is 34176033.81952084 s in the future tar: ./usr/share/man/de/man8: time stamp 2026-11-30 02:07:14 is 34176040.819500745 s in the future tar: ./usr/share/man/de: time stamp 2026-11-30 02:06:24 is 34175990.819480969 s in the future tar: ./usr/share/man/es/man1: time stamp 2026-11-30 02:07:14 is 34176040.819460027 s in the future tar: ./usr/share/man/es/man8: time stamp 2026-11-30 02:07:14 is 34176040.819405542 s in the future tar: ./usr/share/man/es: time stamp 2026-11-30 02:05:27 is 34175933.819383515 s in the future tar: ./usr/share/man/sv/man1: time stamp 2026-11-30 02:07:14 is 34176040.819361504 s in the future tar: ./usr/share/man/sv: time stamp 2026-11-30 02:06:26 is 34175992.819340287 s in the future tar: ./usr/share/man/man7: time stamp 2026-11-30 02:06:26 is 34175992.81931878 s in the future tar: ./usr/share/man/fi/man8: time stamp 2026-11-30 02:07:14 is 34176040.819299666 s in the future tar: ./usr/share/man/fi: time stamp 2026-11-30 02:07:06 is 34176032.819279895 s in the future tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 02:07:14 is 34176040.819220157 s in the future tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 02:07:14 is 34176040.819195563 s in the future tar: ./usr/share/man/fr: time stamp 2026-11-30 02:06:24 is 34175990.819175022 s in the future tar: ./usr/share/man: time stamp 2026-11-30 02:07:06 is 34176032.819155428 s in the future tar: ./usr/share: time stamp 2026-11-30 02:07:07 is 34176033.819134005 s in the future tar: ./usr: time stamp 2026-11-30 02:05:59 is 34175965.81911584 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-30 02:06:42 is 34176008.819047165 s in the future tar: ./etc/systemd/system: time stamp 2026-11-30 02:06:00 is 34175966.819031785 s in the future tar: ./etc/alternatives: time stamp 2026-11-30 02:07:14 is 34176040.819008297 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-mmcif-pdbx_2.0.1-2.dsc] I: copying [./python-mmcif-pdbx_2.0.1.orig.tar.gz] I: copying [./python-mmcif-pdbx_2.0.1-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-mmcif-pdbx_2.0.1-2.dsc: no acceptable signature found dpkg-source: info: extracting python-mmcif-pdbx in python-mmcif-pdbx-2.0.1 dpkg-source: info: unpacking python-mmcif-pdbx_2.0.1.orig.tar.gz dpkg-source: info: unpacking python-mmcif-pdbx_2.0.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/543093/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='52e4be45e12e4142b92a58f327e5b3dd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='543093' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/pbuilderrc_KNyt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b1 --logfile b1/build.log python-mmcif-pdbx_2.0.1-2.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/543093/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, dh-sequence-sphinxdoc, python3-all, python3-pytest, python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-jquery{a} libjs-sphinxdoc{a} libjson-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-requests{a} python3-roman-numerals{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After unpacking 146 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.22.2+dfsg-2 [128 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.22.2+dfsg-2 [432 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 68 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 3.0.3-1 [13.8 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-8 [619 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.2.3-8 [477 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] Fetched 35.5 MB in 1s (26.4 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20222 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libjson-perl (4.10000-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up openssl (3.5.4-1) ... Setting up readline-common (8.3-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up sphinx-common (8.2.3-8) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (3.0.3-1) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-snowballstemmer (3.0.1-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-roman-numerals (3.1.0-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (2.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.22.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.22.2+dfsg-2) ... Setting up python3-sphinx (8.2.3-8) ... Setting up python3-sphinxcontrib.jquery (4.1-6) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-mmcif-pdbx-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-mmcif-pdbx_2.0.1-2_source.changes dpkg-buildpackage: info: source package python-mmcif-pdbx dpkg-buildpackage: info: source version 2.0.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-mmcif-pdbx-2.0.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf mmcif_pdbx.egg-info make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild --with python3 dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/containers.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/__init__.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/reader.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/writer.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx PYTHONPATH=. python3 -m sphinx -N -bhtml docs build/html Running Sphinx v8.2.3 loading translations [en]... done WARNING: html_static_path entry '_static' does not exist [autosummary] generating autosummary for: api/data.rst, api/errors.rst, api/functions.rst, api/index.rst, api/io.rst, changelog.rst, index.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] api/data reading sources... [ 29%] api/errors reading sources... [ 43%] api/functions reading sources... [ 57%] api/index reading sources... [ 71%] api/io reading sources... [ 86%] changelog reading sources... [100%] index /build/reproducible-path/python-mmcif-pdbx-2.0.1/docs/api/index.rst:8: WARNING: duplicate object description of pdbx, other instance in api/functions, use :no-index: for one of them looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 14%] api/data writing output... [ 29%] api/errors writing output... [ 43%] api/functions writing output... [ 57%] api/index writing output... [ 71%] api/io writing output... [ 86%] changelog writing output... [100%] index generating indices... genindex py-modindex done highlighting module code... [ 20%] pdbx highlighting module code... [ 40%] pdbx.containers highlighting module code... [ 60%] pdbx.errors highlighting module code... [ 80%] pdbx.reader highlighting module code... [100%] pdbx.writer writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 2 warnings. The HTML pages are in build/html. make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_auto_test -- --test-pytest I: pybuild base:311: cd /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 21 items tests/reader_test.py ............s. [ 66%] tests/readwrite_test.py .... [ 85%] tests/test_version.py .. [ 95%] tests/writer_test.py . [100%] ======================== 20 passed, 1 skipped in 2.41s ========================= make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/README.md -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/containers.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/writer.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/reader.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/containers.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__init__.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/reader.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/writer.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/containers.py to containers.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/reader.py to reader.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/writer.py to writer.cpython-313.pyc running install_egg_info running egg_info creating mmcif_pdbx.egg-info writing mmcif_pdbx.egg-info/PKG-INFO writing dependency_links to mmcif_pdbx.egg-info/dependency_links.txt writing top-level names to mmcif_pdbx.egg-info/top_level.txt writing manifest file 'mmcif_pdbx.egg-info/SOURCES.txt' reading manifest file 'mmcif_pdbx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'mmcif_pdbx.egg-info/SOURCES.txt' Copying mmcif_pdbx.egg-info to /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/mmcif_pdbx-2.0.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_installdocs dh_installdocs -p python-pdbx-doc --doc-main-package python3-pdbx build/html make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pdbx-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pdbx-doc' in '../python-pdbx-doc_2.0.1-2_all.deb'. dpkg-deb: building package 'python3-pdbx' in '../python3-pdbx_2.0.1-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-mmcif-pdbx_2.0.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../python-mmcif-pdbx_2.0.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-mmcif-pdbx-2.0.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/543093 and its subdirectories I: Current time: Thu Oct 30 12:47:55 -12 2025 I: pbuilder-time-stamp: 1761871675 Fri Oct 31 00:47:59 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Fri Oct 31 00:47:59 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Fri Oct 31 00:47:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 00:47:59 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-NEBBg4' ==================================================================================== Fri Oct 31 00:48:08 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 python-mmcif-pdbx unstable /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D 2.0.1-2" as arguments. Fri Oct 31 00:48:08 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-EV65aEMW" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 00:48:08 UTC 2025 I: Downloading source for unstable/python-mmcif-pdbx=2.0.1-2 Reading package lists... NOTICE: 'python-mmcif-pdbx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-mmcif-pdbx.git Please use: git clone https://salsa.debian.org/python-team/packages/python-mmcif-pdbx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2155 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (dsc) [2298 B] Get:2 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (tar) [2150 kB] Get:3 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (diff) [3228 B] Fetched 2155 kB in 0s (63.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-mmcif-pdbx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-mmcif-pdbx.git Please use: git clone https://salsa.debian.org/python-team/packages/python-mmcif-pdbx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2155 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (dsc) [2298 B] Get:2 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (tar) [2150 kB] Get:3 http://deb.debian.org/debian unstable/main python-mmcif-pdbx 2.0.1-2 (diff) [3228 B] Fetched 2155 kB in 0s (63.8 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-mmcif-pdbx in unstable on amd64 on ionos11-amd64 now. Date: Fri Oct 31 00:48:08 UTC 2025 Date UTC: Fri Oct 31 00:48:08 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/pbuilderrc_Dfi6 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-mmcif-pdbx = debian-installer -o python-mmcif-pdbx = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-mmcif-pdbx = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/pbuilderrc_Dfi6 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b2 --logfile b2/build.log python-mmcif-pdbx_2.0.1-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 14:48:08 +14 2025 I: pbuilder-time-stamp: 1761871688 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-mmcif-pdbx_2.0.1-2.dsc] I: copying [./python-mmcif-pdbx_2.0.1.orig.tar.gz] I: copying [./python-mmcif-pdbx_2.0.1-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-mmcif-pdbx_2.0.1-2.dsc: no acceptable signature found dpkg-source: info: extracting python-mmcif-pdbx in python-mmcif-pdbx-2.0.1 dpkg-source: info: unpacking python-mmcif-pdbx_2.0.1.orig.tar.gz dpkg-source: info: unpacking python-mmcif-pdbx_2.0.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/53505/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 00:48 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/53505/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/53505/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=aa7b7fbd97aa4474aa65d7a59681c8fa LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=53505 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/pbuilderrc_Dfi6 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b2 --logfile b2/build.log python-mmcif-pdbx_2.0.1-2.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/53505/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, dh-sequence-sphinxdoc, python3-all, python3-pytest, python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-jquery{a} libjs-sphinxdoc{a} libjson-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-requests{a} python3-roman-numerals{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After unpacking 146 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.22.2+dfsg-2 [128 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.22.2+dfsg-2 [432 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 68 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 3.0.3-1 [13.8 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-8 [619 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.2.3-8 [477 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] Fetched 35.5 MB in 10s (3675 kB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libjson-perl (4.10000-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up openssl (3.5.4-1) ... Setting up readline-common (8.3-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up sphinx-common (8.2.3-8) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (3.0.3-1) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-snowballstemmer (3.0.1-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-roman-numerals (3.1.0-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (2.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.22.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.22.2+dfsg-2) ... Setting up python3-sphinx (8.2.3-8) ... Setting up python3-sphinxcontrib.jquery (4.1-6) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/53505/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/53505/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-mmcif-pdbx-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-mmcif-pdbx_2.0.1-2_source.changes dpkg-buildpackage: info: source package python-mmcif-pdbx dpkg-buildpackage: info: source version 2.0.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-mmcif-pdbx-2.0.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf mmcif_pdbx.egg-info make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild --with python3 dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/__init__.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/writer.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/containers.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/reader.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx PYTHONPATH=. python3 -m sphinx -N -bhtml docs build/html Running Sphinx v8.2.3 loading translations [en]... done WARNING: html_static_path entry '_static' does not exist [autosummary] generating autosummary for: api/data.rst, api/errors.rst, api/functions.rst, api/index.rst, api/io.rst, changelog.rst, index.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] api/data reading sources... [ 29%] api/errors reading sources... [ 43%] api/functions reading sources... [ 57%] api/index reading sources... [ 71%] api/io reading sources... [ 86%] changelog reading sources... [100%] index /build/reproducible-path/python-mmcif-pdbx-2.0.1/docs/api/index.rst:8: WARNING: duplicate object description of pdbx, other instance in api/functions, use :no-index: for one of them looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 14%] api/data writing output... [ 29%] api/errors writing output... [ 43%] api/functions writing output... [ 57%] api/index writing output... [ 71%] api/io writing output... [ 86%] changelog writing output... [100%] index generating indices... genindex py-modindex done highlighting module code... [ 20%] pdbx highlighting module code... [ 40%] pdbx.containers highlighting module code... [ 60%] pdbx.errors highlighting module code... [ 80%] pdbx.reader highlighting module code... [100%] pdbx.writer writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 2 warnings. The HTML pages are in build/html. make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_auto_test -- --test-pytest I: pybuild base:311: cd /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 21 items tests/reader_test.py ............s. [ 66%] tests/readwrite_test.py .... [ 85%] tests/test_version.py .. [ 95%] tests/writer_test.py . [100%] ======================== 20 passed, 1 skipped in 2.29s ========================= make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__init__.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/writer.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/writer.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/reader.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/containers.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/containers.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/reader.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/README.md -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/writer.py to writer.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/containers.py to containers.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/reader.py to reader.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/errors.py to errors.cpython-313.pyc running install_egg_info running egg_info creating mmcif_pdbx.egg-info writing mmcif_pdbx.egg-info/PKG-INFO writing dependency_links to mmcif_pdbx.egg-info/dependency_links.txt writing top-level names to mmcif_pdbx.egg-info/top_level.txt writing manifest file 'mmcif_pdbx.egg-info/SOURCES.txt' reading manifest file 'mmcif_pdbx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'mmcif_pdbx.egg-info/SOURCES.txt' Copying mmcif_pdbx.egg-info to /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/mmcif_pdbx-2.0.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_installdocs dh_installdocs -p python-pdbx-doc --doc-main-package python3-pdbx build/html make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pdbx-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pdbx-doc' in '../python-pdbx-doc_2.0.1-2_all.deb'. dpkg-deb: building package 'python3-pdbx' in '../python3-pdbx_2.0.1-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-mmcif-pdbx_2.0.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../python-mmcif-pdbx_2.0.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-mmcif-pdbx-2.0.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/53505/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/53505/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/53505 and its subdirectories I: Current time: Fri Oct 31 14:50:16 +14 2025 I: pbuilder-time-stamp: 1761871816 + false + set +x Fri Oct 31 00:50:16 UTC 2025 I: Signing ./b2/python-mmcif-pdbx_2.0.1-2_amd64.buildinfo as python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc Fri Oct 31 00:50:16 UTC 2025 I: Signed ./b2/python-mmcif-pdbx_2.0.1-2_amd64.buildinfo as ./b2/python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc Fri Oct 31 00:50:16 UTC 2025 - build #2 for python-mmcif-pdbx/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 00:50:16 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-EV65aEMW, removing. /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D: total 348 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 00:47 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 00:50 b2 -rw-rw-r-- 1 jenkins jenkins 2298 Mar 14 2022 python-mmcif-pdbx_2.0.1-2.dsc -rw------- 1 jenkins jenkins 336438 Oct 31 00:47 rbuildlog.x2yJ5QS /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b1: total 432 -rw-r--r-- 1 jenkins jenkins 332679 Oct 31 00:47 build.log -rw-r--r-- 1 jenkins jenkins 3228 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2298 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2.dsc -rw-r--r-- 1 jenkins jenkins 6876 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7758 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1432 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 1262 Oct 31 00:47 python-mmcif-pdbx_2.0.1-2_source.changes -rw-r--r-- 1 jenkins jenkins 46456 Oct 31 00:47 python-pdbx-doc_2.0.1-2_all.deb -rw-r--r-- 1 jenkins jenkins 17456 Oct 31 00:47 python3-pdbx_2.0.1-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b2: total 160 -rw-rw-r-- 1 jenkins jenkins 60300 Oct 31 00:50 build.log -rw-r--r-- 1 jenkins jenkins 3228 Oct 31 00:50 python-mmcif-pdbx_2.0.1-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2298 Oct 31 00:50 python-mmcif-pdbx_2.0.1-2.dsc -rw-rw-r-- 1 jenkins jenkins 6876 Oct 31 00:50 python-mmcif-pdbx_2.0.1-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7758 Oct 31 00:50 python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1432 Oct 31 00:50 python-mmcif-pdbx_2.0.1-2_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1262 Oct 31 00:50 python-mmcif-pdbx_2.0.1-2_source.changes -rw-r--r-- 1 jenkins jenkins 46456 Oct 31 00:50 python-pdbx-doc_2.0.1-2_all.deb -rw-r--r-- 1 jenkins jenkins 17456 Oct 31 00:50 python3-pdbx_2.0.1-2_all.deb Fri Oct 31 00:50:16 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Fri Oct 31 00:50:16 UTC 2025 I: python-mmcif-pdbx_2.0.1-2_amd64.changes: Format: 1.8 Date: Mon, 14 Mar 2022 01:06:17 -0400 Source: python-mmcif-pdbx Binary: python-pdbx-doc python3-pdbx Architecture: all Version: 2.0.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Python Team Changed-By: Andrius Merkys Description: python-pdbx-doc - utilities for PDBx/mmCIF storage model (common documentation) python3-pdbx - utilities for PDBx/mmCIF storage model (Python 3) Changes: python-mmcif-pdbx (2.0.1-2) unstable; urgency=medium . * No-changes source-only upload. Checksums-Sha1: c6b6a8c572dadc8d4a5ccfc67e0a24de4f086038 6876 python-mmcif-pdbx_2.0.1-2_amd64.buildinfo 8636e3e624bab030d69bf7158527a4b2220e949b 46456 python-pdbx-doc_2.0.1-2_all.deb 5b0633b819f72198c775526b022c5a4eaeb920a2 17456 python3-pdbx_2.0.1-2_all.deb Checksums-Sha256: 023e0aceb7fdf994e6062fbd455ffe6ad71905194a9c6ac8205b6a7c3a396b83 6876 python-mmcif-pdbx_2.0.1-2_amd64.buildinfo 2d60284c7203ba8e4a1fd4bb4917eb47078ece571f6264ac0d61b51231d5e346 46456 python-pdbx-doc_2.0.1-2_all.deb 9e13a47194b63c342c3257197ad956bd5d4b76a39370075c5f182cefd232c475 17456 python3-pdbx_2.0.1-2_all.deb Files: 407400c65168375c190933f9eafa8d0b 6876 python optional python-mmcif-pdbx_2.0.1-2_amd64.buildinfo c9a8600e51a02f6abdc6f9568b4dbd0f 46456 doc optional python-pdbx-doc_2.0.1-2_all.deb 2b305e967ee550435825a50bdc1b65b8 17456 python optional python3-pdbx_2.0.1-2_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-mmcif-pdbx_2.0.1-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-mmcif-pdbx_2.0.1-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/python-mmcif-pdbx_2.0.1-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/python-mmcif-pdbx_2.0.1-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/python-mmcif-pdbx_2.0.1-2_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/python-mmcif-pdbx_2.0.1-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 00:47:57.510722589 +0000 +++ b2/build.log 2025-10-31 00:50:16.670889584 +0000 @@ -1,2553 +1,8 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 12:46:22 -12 2025 -I: pbuilder-time-stamp: 1761871582 +I: Current time: Fri Oct 31 14:48:08 +14 2025 +I: pbuilder-time-stamp: 1761871688 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] -tar: ./build: time stamp 2026-11-30 02:06:57 is 34176032.530243665 s in the future -tar: ./dev/ptmx: time stamp 2026-11-30 02:05:29 is 34175944.530031078 s in the future -tar: ./dev/zero: time stamp 2026-11-30 02:05:29 is 34175944.529898276 s in the future -tar: ./dev/null: time stamp 2026-11-30 02:05:29 is 34175944.529846113 s in the future -tar: ./dev/console: time stamp 2026-11-30 02:05:29 is 34175944.529768956 s in the future -tar: ./dev/random: time stamp 2026-11-30 02:05:29 is 34175944.529720158 s in the future -tar: ./dev/full: time stamp 2026-11-30 02:05:29 is 34175944.529674405 s in the future -tar: ./dev/pts: time stamp 2026-11-30 02:05:29 is 34175944.529597705 s in the future -tar: ./dev/tty: time stamp 2026-11-30 02:05:29 is 34175944.529508659 s in the future -tar: ./dev/urandom: time stamp 2026-11-30 02:05:29 is 34175944.529459959 s in the future -tar: ./etc/terminfo: time stamp 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34175933.820522924 s in the future -tar: ./usr/share/locale/sr/LC_TIME: time stamp 2026-11-30 02:06:07 is 34175973.820496847 s in the future -tar: ./usr/share/locale/sr: time stamp 2026-11-30 02:05:27 is 34175933.820473679 s in the future -tar: ./usr/share/locale/pt/LC_TIME: time stamp 2026-11-30 02:06:07 is 34175973.820446636 s in the future -tar: ./usr/share/locale/pt: time stamp 2026-11-30 02:05:27 is 34175933.820422082 s in the future -tar: ./usr/share/locale/uk/LC_TIME: time stamp 2026-11-30 02:06:07 is 34175973.820397678 s in the future -tar: ./usr/share/locale/uk: time stamp 2026-11-30 02:05:27 is 34175933.820373103 s in the future -tar: ./usr/share/locale/id/LC_TIME: time stamp 2026-11-30 02:06:07 is 34175973.820347113 s in the future -tar: ./usr/share/locale/id: time stamp 2026-11-30 02:05:27 is 34175933.820324019 s in the future -tar: ./usr/share/locale/fi/LC_TIME: time stamp 2026-11-30 02:06:07 is 34175973.820298553 s in the future -tar: ./usr/share/locale/fi: time stamp 2026-11-30 02:05:27 is 34175933.820275192 s in the future -tar: ./usr/share/locale/fr/LC_TIME: time stamp 2026-11-30 02:06:07 is 34175973.820249082 s in the future -tar: ./usr/share/locale/fr: time stamp 2026-11-30 02:05:27 is 34175933.820227296 s in the future -tar: ./usr/share/locale: time stamp 2026-11-30 02:07:05 is 34176031.820206678 s in the future -tar: ./usr/share/man/sl/man1: time stamp 2026-11-30 02:06:21 is 34175987.820179213 s in the future -tar: ./usr/share/man/cs/man8: time stamp 2026-11-30 02:07:14 is 34176040.820135014 s in the future -tar: ./usr/share/man/cs: time stamp 2026-11-30 02:07:04 is 34176030.820110353 s in the future -tar: ./usr/share/man/it/man1: time stamp 2026-11-30 02:07:06 is 34176032.820083963 s in the future -tar: ./usr/share/man/it/man8: time stamp 2026-11-30 02:07:14 is 34176040.82005894 s in the future -tar: ./usr/share/man/it: time stamp 2026-11-30 02:05:27 is 34175933.820035423 s in the future -tar: ./usr/share/man/ja/man1: time stamp 2026-11-30 02:07:05 is 34176031.820010896 s in the future -tar: ./usr/share/man/ja/man8: time stamp 2026-11-30 02:07:14 is 34176040.819987617 s in the future -tar: ./usr/share/man/ja: time stamp 2026-11-30 02:05:27 is 34175933.819965229 s in the future -tar: ./usr/share/man/gl/man8: time stamp 2026-11-30 02:07:14 is 34176040.819940729 s in the future -tar: ./usr/share/man/gl: time stamp 2026-11-30 02:07:06 is 34176032.819916638 s in the future -tar: ./usr/share/man/pl/man1: time stamp 2026-11-30 02:07:05 is 34176031.819894252 s in the future -tar: ./usr/share/man/pl/man8: time stamp 2026-11-30 02:07:14 is 34176040.819869482 s in the future -tar: ./usr/share/man/pl: time stamp 2026-11-30 02:05:27 is 34175933.819846897 s in the future -tar: ./usr/share/man/man1: time stamp 2026-11-30 02:07:14 is 34176040.819624804 s in the future -tar: ./usr/share/man/man8: time stamp 2026-11-30 02:07:14 is 34176040.819549926 s in the future -tar: ./usr/share/man/de/man1: time stamp 2026-11-30 02:07:07 is 34176033.81952084 s in the future -tar: ./usr/share/man/de/man8: time stamp 2026-11-30 02:07:14 is 34176040.819500745 s in the future -tar: ./usr/share/man/de: time stamp 2026-11-30 02:06:24 is 34175990.819480969 s in the future -tar: ./usr/share/man/es/man1: time stamp 2026-11-30 02:07:14 is 34176040.819460027 s in the future -tar: ./usr/share/man/es/man8: time stamp 2026-11-30 02:07:14 is 34176040.819405542 s in the future -tar: ./usr/share/man/es: time stamp 2026-11-30 02:05:27 is 34175933.819383515 s in the future -tar: ./usr/share/man/sv/man1: time stamp 2026-11-30 02:07:14 is 34176040.819361504 s in the future -tar: ./usr/share/man/sv: time stamp 2026-11-30 02:06:26 is 34175992.819340287 s in the future -tar: ./usr/share/man/man7: time stamp 2026-11-30 02:06:26 is 34175992.81931878 s in the future -tar: ./usr/share/man/fi/man8: time stamp 2026-11-30 02:07:14 is 34176040.819299666 s in the future -tar: ./usr/share/man/fi: time stamp 2026-11-30 02:07:06 is 34176032.819279895 s in the future -tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 02:07:14 is 34176040.819220157 s in the future -tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 02:07:14 is 34176040.819195563 s in the future -tar: ./usr/share/man/fr: time stamp 2026-11-30 02:06:24 is 34175990.819175022 s in the future -tar: ./usr/share/man: time stamp 2026-11-30 02:07:06 is 34176032.819155428 s in the future -tar: ./usr/share: time stamp 2026-11-30 02:07:07 is 34176033.819134005 s in the future -tar: ./usr: time stamp 2026-11-30 02:05:59 is 34175965.81911584 s in the future -tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-30 02:06:42 is 34176008.819047165 s in the future -tar: ./etc/systemd/system: time stamp 2026-11-30 02:06:00 is 34175966.819031785 s in the future -tar: ./etc/alternatives: time stamp 2026-11-30 02:07:14 is 34176040.819008297 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -2567,53 +22,85 @@ dpkg-source: info: unpacking python-mmcif-pdbx_2.0.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/543093/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/53505/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 00:48 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/53505/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/53505/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='52e4be45e12e4142b92a58f327e5b3dd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='543093' - PS1='# ' - PS2='> ' + INVOCATION_ID=aa7b7fbd97aa4474aa65d7a59681c8fa + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=53505 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/pbuilderrc_KNyt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b1 --logfile b1/build.log python-mmcif-pdbx_2.0.1-2.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/pbuilderrc_Dfi6 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b2 --logfile b2/build.log python-mmcif-pdbx_2.0.1-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/543093/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/53505/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -2755,7 +242,7 @@ Get: 90 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] -Fetched 35.5 MB in 1s (26.4 MB/s) +Fetched 35.5 MB in 10s (3675 kB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -3061,8 +548,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Oct 31 00:47:24 UTC 2025. -Universal Time is now: Fri Oct 31 00:47:24 UTC 2025. +Local time is now: Fri Oct 31 00:49:45 UTC 2025. +Universal Time is now: Fri Oct 31 00:49:45 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -3160,7 +647,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-mmcif-pdbx-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-mmcif-pdbx_2.0.1-2_source.changes +I: user script /srv/workspace/pbuilder/53505/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/53505/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-mmcif-pdbx-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-mmcif-pdbx_2.0.1-2_source.changes dpkg-buildpackage: info: source package python-mmcif-pdbx dpkg-buildpackage: info: source version 2.0.1-2 dpkg-buildpackage: info: source distribution unstable @@ -3247,12 +738,12 @@ running build running build_py creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx -copying pdbx/containers.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx -copying pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx -copying pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/__init__.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx -copying pdbx/reader.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx copying pdbx/writer.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx +copying pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx +copying pdbx/containers.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx +copying pdbx/reader.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx +copying pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx PYTHONPATH=. python3 -m sphinx -N -bhtml docs build/html Running Sphinx v8.2.3 loading translations [en]... done @@ -3277,9 +768,9 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/basic.css +Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-mmcif-pdbx-2.0.1/build/html/_static/js/versions.js copying static files: done copying extra files... @@ -3323,7 +814,7 @@ tests/test_version.py .. [ 95%] tests/writer_test.py . [100%] -======================== 20 passed, 1 skipped in 2.41s ========================= +======================== 20 passed, 1 skipped in 2.29s ========================= make[1]: Leaving directory '/build/reproducible-path/python-mmcif-pdbx-2.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -3365,33 +856,33 @@ running build_py running install_lib creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages -creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/README.md -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache -creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v -creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__init__.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/writer.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/containers.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/writer.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/reader.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__pycache__/containers.cpython-313.pyc -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__pycache__ copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/containers.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/_version.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/__init__.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/reader.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx -copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/writer.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx -byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/containers.py to containers.cpython-313.pyc -byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/errors.py to errors.cpython-313.pyc -byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/_version.py to _version.cpython-313.pyc +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/pdbx/errors.py -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx +creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache +creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v +creating /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/python-mmcif-pdbx-2.0.1/.pybuild/cpython3_3.13_pdbx/build/.pytest_cache/README.md -> /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/.pytest_cache byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/reader.py to reader.cpython-313.pyc byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/writer.py to writer.cpython-313.pyc +byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/_version.py to _version.cpython-313.pyc +byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/containers.py to containers.cpython-313.pyc +byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/reader.py to reader.cpython-313.pyc +byte-compiling /build/reproducible-path/python-mmcif-pdbx-2.0.1/debian/python3-pdbx/usr/lib/python3.13/dist-packages/pdbx/errors.py to errors.cpython-313.pyc running install_egg_info running egg_info creating mmcif_pdbx.egg-info @@ -3436,12 +927,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/53505/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/53505/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/543093 and its subdirectories -I: Current time: Thu Oct 30 12:47:55 -12 2025 -I: pbuilder-time-stamp: 1761871675 +I: removing directory /srv/workspace/pbuilder/53505 and its subdirectories +I: Current time: Fri Oct 31 14:50:16 +14 2025 +I: pbuilder-time-stamp: 1761871816 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/python-mmcif-pdbx_2.0.1-2.diff: 88.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/python-mmcif-pdbx_2.0.1-2.diff.gz b2/build.log: 81.5% -- replaced with stdout Compressing the 1st log... b1/build.log: 87.7% -- replaced with stdout Fri Oct 31 00:50:17 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-mmcif-pdbx_unstable_amd64_1761871817 + touch /var/log/reproducible-builds/diffoscope_stamp_python-mmcif-pdbx_unstable_amd64_1761871817 + RESULT=0 + systemd-run '--description=diffoscope on python-mmcif-pdbx/2.0.1-2 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_16-76443 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D --run-session -c jenkins-reproducible-unstable-diffoscope-3c44175e-24d6-4060-8e26-4a0d1bf746a0 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/dbd-tmp-X2rxad3 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/python-mmcif-pdbx_2.0.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/python-mmcif-pdbx_2.0.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/python-mmcif-pdbx_2.0.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b1/python-mmcif-pdbx_2.0.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b2/python-mmcif-pdbx_2.0.1-2_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_16-76443.service; invocation ID: 843544676a554c2fbba3f3152b824646 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/python-mmcif-pdbx_2.0.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/python-mmcif-pdbx_2.0.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/python-mmcif-pdbx_2.0.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b1/python-mmcif-pdbx_2.0.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.txEI4d8D/b2/python-mmcif-pdbx_2.0.1-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 226ms CPU time consumed: 193ms Memory peak: 17.8M (swap: 0B) _ _ _ __ _ __ _ _| |_| |__ ___ _ __ _ __ ___ _ __ ___ ___(_)/ _| | '_ \| | | | __| '_ \ / _ \| '_ \ _____| '_ ` _ \| '_ ` _ \ / __| | |_ _____ | |_) | |_| | |_| | | | (_) | | | |_____| | | | | | | | | | | (__| | _|_____| | .__/ \__, |\__|_| |_|\___/|_| |_| |_| |_| |_|_| |_| |_|\___|_|_| |_| |___/ _ _ _ __ __| | |____ __ | '_ \ / _` | '_ \ \/ / | |_) | (_| | |_) > < | .__/ \__,_|_.__/_/\_\ |_| Fri Oct 31 00:50:19 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 00:50:19 UTC 2025 I: python-mmcif-pdbx from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 00:50:19] INFO: Starting at 2025-10-31 00:50:19.563320 [2025-10-31 00:50:19] INFO: Generating the pages of 1 package(s) [2025-10-31 00:50:19] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/python-mmcif-pdbx didn't produce a buildlog, even though it has been built. [2025-10-31 00:50:19] INFO: Finished at 2025-10-31 00:50:19.745782, took: 0:00:00.182467 Fri Oct 31 00:50:19 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/python-mmcif-pdbx.html Fri Oct 31 00:50:19 UTC 2025 I: Removing signed python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc files: removed './b1/python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc' removed './b2/python-mmcif-pdbx_2.0.1-2_amd64.buildinfo.asc' 1761871819 amd64 unstable python-mmcif-pdbx Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-mmcif-pdbx_2.0.1-2.rbuild.log: 87.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-mmcif-pdbx_2.0.1-2.rbuild.log.gz [2025-10-31 00:50:20] INFO: Starting at 2025-10-31 00:50:20.111298 [2025-10-31 00:50:20] INFO: Generating the pages of 1 package(s) [2025-10-31 00:50:20] INFO: Finished at 2025-10-31 00:50:20.322314, took: 0:00:00.211021 All cleanup done. Fri Oct 31 00:50:20 UTC 2025 - total duration: 0h 4m 17s. Fri Oct 31 00:50:20 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-za2Lrhvi, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 4min 18.422s CPU time consumed: 3.358s Memory peak: 37.7M (swap: 0B)