Running as unit: rb-build-amd64_17-23110.service ==================================================================================== Fri Nov 22 16:58:01 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_17) on jenkins, called using "ionos1-amd64 ionos5-amd64" as arguments. Fri Nov 22 16:58:01 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-TvcvGGlp" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 16:58:01 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Nov 22 16:58:01 UTC 2024 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-X5Q5BA' Fri Nov 22 16:58:02 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Nov 22 16:58:02 UTC 2024 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-4E6pvx' ok, let's check if soapaligner is building anywhere yet… ok, soapaligner is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of soapaligner in trixie on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Fri Nov 22 16:58:16 UTC 2024 I: starting to build soapaligner/trixie/amd64 on jenkins on '2024-11-22 16:58' Fri Nov 22 16:58:16 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/23110/console.log 1732294696 amd64 trixie soapaligner Fri Nov 22 16:58:16 UTC 2024 I: Downloading source for trixie/soapaligner=2.20-5 --2024-11-22 16:58:16-- http://deb.debian.org/debian/pool/main/s/soapaligner/soapaligner_2.20-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2039 (2.0K) [text/prs.lines.tag] Saving to: ‘soapaligner_2.20-5.dsc’ 0K . 100% 317M=0s 2024-11-22 16:58:16 (317 MB/s) - ‘soapaligner_2.20-5.dsc’ saved [2039/2039] --2024-11-22 16:58:16-- http://deb.debian.org/debian/pool/main/s/soapaligner/soapaligner_2.20-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2039 (2.0K) [text/prs.lines.tag] Saving to: ‘soapaligner_2.20-5.dsc’ 0K . 100% 317M=0s 2024-11-22 16:58:16 (317 MB/s) - ‘soapaligner_2.20-5.dsc’ saved [2039/2039] Fri Nov 22 16:58:16 UTC 2024 I: soapaligner_2.20-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: soapaligner Binary: soapaligner Architecture: any-amd64 Version: 2.20-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/soapaligner Vcs-Git: https://salsa.debian.org/med-team/soapaligner.git Build-Depends: debhelper-compat (= 13) Package-List: soapaligner deb science optional arch=any-amd64,x32 Checksums-Sha1: b99762edeee90352f191511f0d26db32ab9e43d1 110922 soapaligner_2.20.orig.tar.gz 3a8105fb94fe86e89a53059b09ad5f9ecc119022 6408 soapaligner_2.20-5.debian.tar.xz Checksums-Sha256: c5253dddc35e289723f3daada4a3a083111ff6fb9898bc8241dab6f6f972d456 110922 soapaligner_2.20.orig.tar.gz 16c6459f2b63507fd99dfc1e278f0b5bea7092a9934880b88498b8b015fd0ae3 6408 soapaligner_2.20-5.debian.tar.xz Files: ca75753697b12749c42356f366738fef 110922 soapaligner_2.20.orig.tar.gz 94c9ac888c01e1e6c2d7fd85b3850b02 6408 soapaligner_2.20-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAAOt0UHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEVWQ/5ASTl2qFB2ifO3+cEaZaTgyhTU8I3 T1E0DzDC3ix8ZVf2wQcVrHsYzP6A9en4yuWDH4FELvqcjJXRj6IVxbTdF+hG6rH8 rx9K+O5rmmbxkhH4VVElEeSC0Xrzo/vtTajES1NzTr+bqyUxnxIqve8sARQ7cA9J V3mmzqPLreJGrpN2unE4X+dvkt2v7xgMwAPT3otfHYtzngMtE59t+cqeyWic5LAj 2kBhbXTQghfMLvdIeX/MGz36FsKWzGB7bJOVKbTDstgMy5OWRSBfPF4eMOliP8xD nH5xrVfHy9FgEUCBjEkPxcu00GQEUQMtAklI5vzI6xMLRsbg2E+yjwHKQIpuJuMZ rDwe7eMqwiecmvT/lznauKam34meWhrgx3ClKnv9BxOObvlcAWWc5I4qxL8/N09S XuIy7Se2wmiNNxpyTFP6f4NtRrtadZW31Y0bsucZVFkaomN+RaIO8MGldgF2idyp o2QMnI6WAgoUZD90/2zsQj0RrVgBG13FPjRgNGgblzoelCr77gHgcV0i+bdLYm+J zK+UE2Ma76BiFs2idti1zh8hCE5cbr2hYWDSBdaYObN8KZmJE7bBCVH0YxDrASN/ PTANR6FXQ0kqOpWWZ8H45OcEVMu9hhbxUJf2z4xF9LXBEsfvLfv4QXepdL0lnK1b bEp8xTfp9oRghtA= =xZ4B -----END PGP SIGNATURE----- Fri Nov 22 16:58:16 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 16:58:16 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Nov 22 16:58:16 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Nov 22 16:58:16 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Nov 22 16:58:16 UTC 2024 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-LMsxZG' ==================================================================================== Fri Nov 22 16:58:18 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 soapaligner trixie /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv 2.20-5" as arguments. Fri Nov 22 16:58:18 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-a3pO396k" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 16:58:18 UTC 2024 I: Downloading source for trixie/soapaligner=2.20-5 Reading package lists... NOTICE: 'soapaligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapaligner.git Please use: git clone https://salsa.debian.org/med-team/soapaligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 119 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (dsc) [2039 B] Get:2 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (tar) [111 kB] Get:3 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (diff) [6408 B] Fetched 119 kB in 0s (1898 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'soapaligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapaligner.git Please use: git clone https://salsa.debian.org/med-team/soapaligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 119 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (dsc) [2039 B] Get:2 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (tar) [111 kB] Get:3 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (diff) [6408 B] Fetched 119 kB in 0s (1898 kB/s) Download complete and in download only mode ============================================================================= Building soapaligner in trixie on amd64 on ionos1-amd64 now. Date: Fri Nov 22 16:58:18 UTC 2024 Date UTC: Fri Nov 22 16:58:18 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 04:58:19 -12 2024 I: pbuilder-time-stamp: 1732294699 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [soapaligner_2.20-5.dsc] I: copying [./soapaligner_2.20.orig.tar.gz] I: copying [./soapaligner_2.20-5.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 14 12:36:45 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./soapaligner_2.20-5.dsc: no acceptable signature found dpkg-source: info: extracting soapaligner in soapaligner-2.20 dpkg-source: info: unpacking soapaligner_2.20.orig.tar.gz dpkg-source: info: unpacking soapaligner_2.20-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler_options.patch dpkg-source: info: applying linkerror.patch dpkg-source: info: applying UsageDoublette.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc-10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2757891/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='86f1e42b82104e21b151b008ddc8d17e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2757891' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/pbuilderrc_f9p2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b1 --logfile b1/build.log soapaligner_2.20-5.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2757891/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Fetched 19.8 MB in 4s (4700 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/soapaligner-2.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapaligner_2.20-5_source.changes dpkg-buildpackage: info: source package soapaligner dpkg-buildpackage: info: source version 2.20-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j20 clean make[1]: Entering directory '/build/reproducible-path/soapaligner-2.20' rm -f *.o soap make[1]: Leaving directory '/build/reproducible-path/soapaligner-2.20' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/soapaligner.substvars debian/files rm -fr -- debian/soapaligner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapaligner-2.20' cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.c -o SeqIO.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MiscUtilities.c -o MiscUtilities.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MemManager.c -o MemManager.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" TextConverter.c -o TextConverter.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" r250.c -o r250.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" DNACount.c -o DNACount.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" HSP.c -o HSP.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Timing.c -o Timing.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWT.c -o BWT.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" extratools.c -o extratools.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soapio.c -o soapio.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWTAln.c -o BWTAln.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Match.c -o Match.o r250.c: In function 'randlcg': r250.c:33:41: warning: overflow in conversion from 'long int' to 'int' changes value from '548781581296767' to '724984959' [-Woverflow] 33 | static int quotient1 = LONG_MAX / 16807L; | ^~~~~~~~ cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" PairMatch.c -o PairMatch.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" stdaln.c -o stdaln.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" kstring.c -o kstring.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soap.c -o soap.o In file included from extratools.c:1: extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from soapio.h:21, from soapio.c:17: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from Match.c:17: Match.h:130:12: warning: inline function 'CheckIns' declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from BWTAln.h:23, from BWTAln.c:1: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from PairMatch.c:19: Match.h:132:13: warning: inline function 'PickupHit' declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ In file included from BWTAln.h:23, from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from soap.c:24: Match.h:132:13: warning: inline function 'PickupHit' declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ Match.h:130:12: warning: inline function 'CheckIns' declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ cc -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.o MiscUtilities.o MemManager.o TextConverter.o r250.o DNACount.o HSP.o Timing.o BWT.o extratools.o soapio.o BWTAln.o Match.o PairMatch.o stdaln.o kstring.o soap.o -o soap -Wl,-flto -Wl,-z,relro -lm -lpthread In function 'aln_local_core', inlined from 'SWRescue' at PairMatch.c:167:3: stdaln.c:740:17: warning: 'free' called on pointer 'MEM[(int * *)_1041]' with nonzero offset 4 [-Wfree-nonheap-object] 740 | MYFREE(s_array[i]); | ^ make[1]: Leaving directory '/build/reproducible-path/soapaligner-2.20' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-ILsoNbf4 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/soapaligner.substvars rm -fr -- debian/.debhelper/generated/soapaligner/ debian/soapaligner/ debian/tmp/ dh_auto_install --destdir=debian/soapaligner/ install -m0755 -d /build/reproducible-path/soapaligner-2.20/debian/soapaligner dh_install install -m0755 -d debian/soapaligner/usr/bin cp --reflink=auto -a ./soap debian/soapaligner/usr/bin/ dh_installdocs install -m0755 -d debian/soapaligner/usr/share/doc/soapaligner install -m0755 -d debian/soapaligner/usr/share/doc/soapaligner cp --reflink=auto -a ./NEWS debian/soapaligner/usr/share/doc/soapaligner chmod -R u\+rw,go=rX debian/soapaligner/usr/share/doc install -p -m0644 debian/README.Debian debian/soapaligner/usr/share/doc/soapaligner/README.Debian install -p -m0644 debian/copyright debian/soapaligner/usr/share/doc/soapaligner/copyright dh_installchangelogs install -m0755 -d debian/soapaligner/usr/share/doc/soapaligner install -p -m0644 debian/.debhelper/generated/soapaligner/dh_installchangelogs.dch.trimmed debian/soapaligner/usr/share/doc/soapaligner/changelog.Debian dh_installman install -m0755 -d debian/soapaligner/usr/share/man/man1/ install -p -m0644 ./soap.1 debian/soapaligner/usr/share/man/man1/soap.1 man-recode --to-code UTF-8 --suffix .dh-new debian/soapaligner/usr/share/man/man1/soap.1 mv debian/soapaligner/usr/share/man/man1/soap.1.dh-new debian/soapaligner/usr/share/man/man1/soap.1 chmod 0644 -- debian/soapaligner/usr/share/man/man1/soap.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/soapaligner chmod a-x usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 gzip -9nf usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 cd '/build/reproducible-path/soapaligner-2.20' dh_fixperms find debian/soapaligner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/soapaligner/usr/share/doc -type f -a -true -a ! -regex 'debian/soapaligner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/soapaligner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/soapaligner/usr/bin/soap dh_strip -a install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/soapaligner/usr/bin/soap debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df/d935269b60b8e6d4bd0ee175a372728c93e707.debug chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df/d935269b60b8e6d4bd0ee175a372728c93e707.debug strip --remove-section=.comment --remove-section=.note debian/soapaligner/usr/bin/soap objcopy --add-gnu-debuglink debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df/d935269b60b8e6d4bd0ee175a372728c93e707.debug debian/soapaligner/usr/bin/soap install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc ln -s soapaligner debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc/soapaligner-dbgsym install -m0755 -d debian/.debhelper/soapaligner dh_makeshlibs -a rm -f debian/soapaligner/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/soapaligner/DEBIAN dpkg-shlibdeps -Tdebian/soapaligner.substvars debian/soapaligner/usr/bin/soap dh_installdeb install -m0755 -d debian/soapaligner/DEBIAN dh_gencontrol install -m0755 -d debian/soapaligner/DEBIAN echo misc:Depends= >> debian/soapaligner.substvars echo misc:Pre-Depends= >> debian/soapaligner.substvars install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/DEBIAN dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -cdebian/control -Pdebian/.debhelper/soapaligner/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=soapaligner-dbgsym "-DDepends=soapaligner (= \${binary:Version})" "-DDescription=debug symbols for soapaligner" -DBuild-Ids=dfd935269b60b8e6d4bd0ee175a372728c93e707 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/control dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -cdebian/control -Pdebian/soapaligner chmod 0644 -- debian/soapaligner/DEBIAN/control dh_md5sums install -m0755 -d debian/soapaligner/DEBIAN cd debian/soapaligner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/soapaligner/DEBIAN/md5sums install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/DEBIAN cd debian/.debhelper/soapaligner/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/soapaligner .. dpkg-deb --root-owner-group --build debian/.debhelper/soapaligner/dbgsym-root .. dpkg-deb: building package 'soapaligner-dbgsym' in '../soapaligner-dbgsym_2.20-5_amd64.deb'. dpkg-deb: building package 'soapaligner' in '../soapaligner_2.20-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../soapaligner_2.20-5_amd64.buildinfo dpkg-genchanges --build=binary -O../soapaligner_2.20-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2757891 and its subdirectories I: Current time: Fri Nov 22 04:59:51 -12 2024 I: pbuilder-time-stamp: 1732294791 Fri Nov 22 16:59:51 UTC 2024 I: Signing ./b1/soapaligner_2.20-5_amd64.buildinfo as soapaligner_2.20-5_amd64.buildinfo.asc Fri Nov 22 16:59:51 UTC 2024 I: Signed ./b1/soapaligner_2.20-5_amd64.buildinfo as ./b1/soapaligner_2.20-5_amd64.buildinfo.asc Fri Nov 22 16:59:51 UTC 2024 - build #1 for soapaligner/trixie/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Fri Nov 22 16:59:51 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-a3pO396k, removing. /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 16:59 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 16:58 b2 -rw------- 1 jenkins jenkins 3158 Nov 22 16:58 rbuildlog.HKmCzjD -rw-r--r-- 1 jenkins jenkins 2039 Jan 14 2021 soapaligner_2.20-5.dsc /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b1: total 236 -rw-r--r-- 1 jenkins jenkins 34696 Nov 22 16:59 build.log -rw-r--r-- 1 jenkins jenkins 111152 Nov 22 16:59 soapaligner-dbgsym_2.20-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 6408 Nov 22 16:59 soapaligner_2.20-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2039 Nov 22 16:59 soapaligner_2.20-5.dsc -rw-r--r-- 1 jenkins jenkins 4974 Nov 22 16:59 soapaligner_2.20-5_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5856 Nov 22 16:59 soapaligner_2.20-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1543 Nov 22 16:59 soapaligner_2.20-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 52684 Nov 22 16:59 soapaligner_2.20-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1390 Nov 22 16:59 soapaligner_2.20-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b2: total 0 Fri Nov 22 16:59:52 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 04:58:19 -12 2024 I: pbuilder-time-stamp: 1732294699 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [soapaligner_2.20-5.dsc] I: copying [./soapaligner_2.20.orig.tar.gz] I: copying [./soapaligner_2.20-5.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 14 12:36:45 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./soapaligner_2.20-5.dsc: no acceptable signature found dpkg-source: info: extracting soapaligner in soapaligner-2.20 dpkg-source: info: unpacking soapaligner_2.20.orig.tar.gz dpkg-source: info: unpacking soapaligner_2.20-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler_options.patch dpkg-source: info: applying linkerror.patch dpkg-source: info: applying UsageDoublette.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc-10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2757891/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='86f1e42b82104e21b151b008ddc8d17e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2757891' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/pbuilderrc_f9p2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b1 --logfile b1/build.log soapaligner_2.20-5.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2757891/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Fetched 19.8 MB in 4s (4700 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/soapaligner-2.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapaligner_2.20-5_source.changes dpkg-buildpackage: info: source package soapaligner dpkg-buildpackage: info: source version 2.20-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j20 clean make[1]: Entering directory '/build/reproducible-path/soapaligner-2.20' rm -f *.o soap make[1]: Leaving directory '/build/reproducible-path/soapaligner-2.20' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/soapaligner.substvars debian/files rm -fr -- debian/soapaligner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapaligner-2.20' cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.c -o SeqIO.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MiscUtilities.c -o MiscUtilities.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MemManager.c -o MemManager.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" TextConverter.c -o TextConverter.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" r250.c -o r250.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" DNACount.c -o DNACount.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" HSP.c -o HSP.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Timing.c -o Timing.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWT.c -o BWT.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" extratools.c -o extratools.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soapio.c -o soapio.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWTAln.c -o BWTAln.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Match.c -o Match.o r250.c: In function 'randlcg': r250.c:33:41: warning: overflow in conversion from 'long int' to 'int' changes value from '548781581296767' to '724984959' [-Woverflow] 33 | static int quotient1 = LONG_MAX / 16807L; | ^~~~~~~~ cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" PairMatch.c -o PairMatch.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" stdaln.c -o stdaln.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" kstring.c -o kstring.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soap.c -o soap.o In file included from extratools.c:1: extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from soapio.h:21, from soapio.c:17: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from Match.c:17: Match.h:130:12: warning: inline function 'CheckIns' declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from BWTAln.h:23, from BWTAln.c:1: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from PairMatch.c:19: Match.h:132:13: warning: inline function 'PickupHit' declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ In file included from BWTAln.h:23, from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from soap.c:24: Match.h:132:13: warning: inline function 'PickupHit' declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ Match.h:130:12: warning: inline function 'CheckIns' declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ cc -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.o MiscUtilities.o MemManager.o TextConverter.o r250.o DNACount.o HSP.o Timing.o BWT.o extratools.o soapio.o BWTAln.o Match.o PairMatch.o stdaln.o kstring.o soap.o -o soap -Wl,-flto -Wl,-z,relro -lm -lpthread In function 'aln_local_core', inlined from 'SWRescue' at PairMatch.c:167:3: stdaln.c:740:17: warning: 'free' called on pointer 'MEM[(int * *)_1041]' with nonzero offset 4 [-Wfree-nonheap-object] 740 | MYFREE(s_array[i]); | ^ make[1]: Leaving directory '/build/reproducible-path/soapaligner-2.20' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-ILsoNbf4 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/soapaligner.substvars rm -fr -- debian/.debhelper/generated/soapaligner/ debian/soapaligner/ debian/tmp/ dh_auto_install --destdir=debian/soapaligner/ install -m0755 -d /build/reproducible-path/soapaligner-2.20/debian/soapaligner dh_install install -m0755 -d debian/soapaligner/usr/bin cp --reflink=auto -a ./soap debian/soapaligner/usr/bin/ dh_installdocs install -m0755 -d debian/soapaligner/usr/share/doc/soapaligner install -m0755 -d debian/soapaligner/usr/share/doc/soapaligner cp --reflink=auto -a ./NEWS debian/soapaligner/usr/share/doc/soapaligner chmod -R u\+rw,go=rX debian/soapaligner/usr/share/doc install -p -m0644 debian/README.Debian debian/soapaligner/usr/share/doc/soapaligner/README.Debian install -p -m0644 debian/copyright debian/soapaligner/usr/share/doc/soapaligner/copyright dh_installchangelogs install -m0755 -d debian/soapaligner/usr/share/doc/soapaligner install -p -m0644 debian/.debhelper/generated/soapaligner/dh_installchangelogs.dch.trimmed debian/soapaligner/usr/share/doc/soapaligner/changelog.Debian dh_installman install -m0755 -d debian/soapaligner/usr/share/man/man1/ install -p -m0644 ./soap.1 debian/soapaligner/usr/share/man/man1/soap.1 man-recode --to-code UTF-8 --suffix .dh-new debian/soapaligner/usr/share/man/man1/soap.1 mv debian/soapaligner/usr/share/man/man1/soap.1.dh-new debian/soapaligner/usr/share/man/man1/soap.1 chmod 0644 -- debian/soapaligner/usr/share/man/man1/soap.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/soapaligner chmod a-x usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 gzip -9nf usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 cd '/build/reproducible-path/soapaligner-2.20' dh_fixperms find debian/soapaligner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/soapaligner/usr/share/doc -type f -a -true -a ! -regex 'debian/soapaligner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/soapaligner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/soapaligner/usr/bin/soap dh_strip -a install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/soapaligner/usr/bin/soap debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df/d935269b60b8e6d4bd0ee175a372728c93e707.debug chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df/d935269b60b8e6d4bd0ee175a372728c93e707.debug strip --remove-section=.comment --remove-section=.note debian/soapaligner/usr/bin/soap objcopy --add-gnu-debuglink debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df/d935269b60b8e6d4bd0ee175a372728c93e707.debug debian/soapaligner/usr/bin/soap install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc ln -s soapaligner debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc/soapaligner-dbgsym install -m0755 -d debian/.debhelper/soapaligner dh_makeshlibs -a rm -f debian/soapaligner/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/soapaligner/DEBIAN dpkg-shlibdeps -Tdebian/soapaligner.substvars debian/soapaligner/usr/bin/soap dh_installdeb install -m0755 -d debian/soapaligner/DEBIAN dh_gencontrol install -m0755 -d debian/soapaligner/DEBIAN echo misc:Depends= >> debian/soapaligner.substvars echo misc:Pre-Depends= >> debian/soapaligner.substvars install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/DEBIAN dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -cdebian/control -Pdebian/.debhelper/soapaligner/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=soapaligner-dbgsym "-DDepends=soapaligner (= \${binary:Version})" "-DDescription=debug symbols for soapaligner" -DBuild-Ids=dfd935269b60b8e6d4bd0ee175a372728c93e707 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/control dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -cdebian/control -Pdebian/soapaligner chmod 0644 -- debian/soapaligner/DEBIAN/control dh_md5sums install -m0755 -d debian/soapaligner/DEBIAN cd debian/soapaligner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/soapaligner/DEBIAN/md5sums install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/DEBIAN cd debian/.debhelper/soapaligner/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/soapaligner .. dpkg-deb --root-owner-group --build debian/.debhelper/soapaligner/dbgsym-root .. dpkg-deb: building package 'soapaligner-dbgsym' in '../soapaligner-dbgsym_2.20-5_amd64.deb'. dpkg-deb: building package 'soapaligner' in '../soapaligner_2.20-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../soapaligner_2.20-5_amd64.buildinfo dpkg-genchanges --build=binary -O../soapaligner_2.20-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2757891 and its subdirectories I: Current time: Fri Nov 22 04:59:51 -12 2024 I: pbuilder-time-stamp: 1732294791 Fri Nov 22 16:59:53 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Nov 22 16:59:53 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Nov 22 16:59:53 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Fri Nov 22 16:59:53 UTC 2024 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-JlBikJ' ==================================================================================== Thu Dec 25 23:22:54 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "2 soapaligner trixie /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv 2.20-5" as arguments. Thu Dec 25 23:22:54 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-IsYV3zAB" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 25 23:22:54 UTC 2025 I: Downloading source for trixie/soapaligner=2.20-5 Reading package lists... NOTICE: 'soapaligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapaligner.git Please use: git clone https://salsa.debian.org/med-team/soapaligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 119 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (dsc) [2039 B] Get:2 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (tar) [111 kB] Get:3 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (diff) [6408 B] Fetched 119 kB in 0s (4563 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'soapaligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapaligner.git Please use: git clone https://salsa.debian.org/med-team/soapaligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 119 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (dsc) [2039 B] Get:2 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (tar) [111 kB] Get:3 http://deb.debian.org/debian trixie/main soapaligner 2.20-5 (diff) [6408 B] Fetched 119 kB in 0s (4563 kB/s) Download complete and in download only mode ============================================================================= Re-Building soapaligner in trixie on amd64 on ionos5-amd64 now. Date: Thu Dec 25 23:22:54 UTC 2025 Date UTC: Thu Dec 25 23:22:54 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/pbuilderrc_6sga + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' soapaligner = debian-installer -o soapaligner = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' soapaligner = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/pbuilderrc_6sga --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b2 --logfile b2/build.log soapaligner_2.20-5.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 26 13:22:54 +14 2025 I: pbuilder-time-stamp: 1766704974 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [soapaligner_2.20-5.dsc] I: copying [./soapaligner_2.20.orig.tar.gz] I: copying [./soapaligner_2.20-5.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 14 12:36:45 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./soapaligner_2.20-5.dsc: no acceptable signature found dpkg-source: info: extracting soapaligner in soapaligner-2.20 dpkg-source: info: unpacking soapaligner_2.20.orig.tar.gz dpkg-source: info: unpacking soapaligner_2.20-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler_options.patch dpkg-source: info: applying linkerror.patch dpkg-source: info: applying UsageDoublette.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc-10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 25 23:23 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=3a113ef77ddf4bbd948c5d93c2e301e1 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3252698 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/pbuilderrc_6sga --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b2 --logfile b2/build.log soapaligner_2.20-5.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Fetched 19.8 MB in 3s (6020 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/soapaligner-2.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../soapaligner_2.20-5_source.changes dpkg-buildpackage: info: source package soapaligner dpkg-buildpackage: info: source version 2.20-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/soapaligner-2.20' rm -f *.o soap make[1]: Leaving directory '/build/reproducible-path/soapaligner-2.20' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/soapaligner.substvars debian/files rm -fr -- debian/soapaligner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapaligner-2.20' cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.c -o SeqIO.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MiscUtilities.c -o MiscUtilities.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MemManager.c -o MemManager.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" TextConverter.c -o TextConverter.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" r250.c -o r250.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" DNACount.c -o DNACount.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" HSP.c -o HSP.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Timing.c -o Timing.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWT.c -o BWT.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" extratools.c -o extratools.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soapio.c -o soapio.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWTAln.c -o BWTAln.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Match.c -o Match.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" PairMatch.c -o PairMatch.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" stdaln.c -o stdaln.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" kstring.c -o kstring.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soap.c -o soap.o r250.c: In function 'randlcg': r250.c:33:41: warning: overflow in conversion from 'long int' to 'int' changes value from '548781581296767' to '724984959' [-Woverflow] 33 | static int quotient1 = LONG_MAX / 16807L; | ^~~~~~~~ In file included from extratools.c:1: extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from soapio.h:21, from soapio.c:17: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from BWTAln.h:23, from BWTAln.c:1: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from Match.c:17: Match.h:130:12: warning: inline function 'CheckIns' declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from PairMatch.c:19: Match.h:132:13: warning: inline function 'PickupHit' declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ In file included from BWTAln.h:23, from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from soap.c:24: Match.h:132:13: warning: inline function 'PickupHit' declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ Match.h:130:12: warning: inline function 'CheckIns' declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ cc -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.o MiscUtilities.o MemManager.o TextConverter.o r250.o DNACount.o HSP.o Timing.o BWT.o extratools.o soapio.o BWTAln.o Match.o PairMatch.o stdaln.o kstring.o soap.o -o soap -Wl,-flto -Wl,-z,relro -lm -lpthread In function 'aln_local_core', inlined from 'SWRescue' at PairMatch.c:167:3: stdaln.c:740:17: warning: 'free' called on pointer 'MEM[(int * *)_1041]' with nonzero offset 4 [-Wfree-nonheap-object] 740 | MYFREE(s_array[i]); | ^ make[1]: Leaving directory '/build/reproducible-path/soapaligner-2.20' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-9aoV6KFp create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/soapaligner.substvars rm -fr -- debian/.debhelper/generated/soapaligner/ debian/soapaligner/ debian/tmp/ dh_auto_install --destdir=debian/soapaligner/ install -m0755 -d /build/reproducible-path/soapaligner-2.20/debian/soapaligner dh_install install -m0755 -d debian/soapaligner/usr/bin cp --reflink=auto -a ./soap debian/soapaligner/usr/bin/ dh_installdocs install -m0755 -d debian/soapaligner/usr/share/doc/soapaligner install -m0755 -d debian/soapaligner/usr/share/doc/soapaligner cp --reflink=auto -a ./NEWS debian/soapaligner/usr/share/doc/soapaligner chmod -R u\+rw,go=rX debian/soapaligner/usr/share/doc install -p -m0644 debian/README.Debian debian/soapaligner/usr/share/doc/soapaligner/README.Debian install -p -m0644 debian/copyright debian/soapaligner/usr/share/doc/soapaligner/copyright dh_installchangelogs install -m0755 -d debian/soapaligner/usr/share/doc/soapaligner install -p -m0644 debian/.debhelper/generated/soapaligner/dh_installchangelogs.dch.trimmed debian/soapaligner/usr/share/doc/soapaligner/changelog.Debian dh_installman install -m0755 -d debian/soapaligner/usr/share/man/man1/ install -p -m0644 ./soap.1 debian/soapaligner/usr/share/man/man1/soap.1 man-recode --to-code UTF-8 --suffix .dh-new debian/soapaligner/usr/share/man/man1/soap.1 mv debian/soapaligner/usr/share/man/man1/soap.1.dh-new debian/soapaligner/usr/share/man/man1/soap.1 chmod 0644 -- debian/soapaligner/usr/share/man/man1/soap.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/soapaligner chmod a-x usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 gzip -9nf usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 cd '/build/reproducible-path/soapaligner-2.20' dh_fixperms find debian/soapaligner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/soapaligner/usr/share/doc -type f -a -true -a ! -regex 'debian/soapaligner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/soapaligner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/soapaligner/usr/bin/soap dh_strip -a install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/soapaligner/usr/bin/soap debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df/d935269b60b8e6d4bd0ee175a372728c93e707.debug chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df/d935269b60b8e6d4bd0ee175a372728c93e707.debug strip --remove-section=.comment --remove-section=.note debian/soapaligner/usr/bin/soap objcopy --add-gnu-debuglink debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/df/d935269b60b8e6d4bd0ee175a372728c93e707.debug debian/soapaligner/usr/bin/soap install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc ln -s soapaligner debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc/soapaligner-dbgsym install -m0755 -d debian/.debhelper/soapaligner dh_makeshlibs -a rm -f debian/soapaligner/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/soapaligner/DEBIAN dpkg-shlibdeps -Tdebian/soapaligner.substvars debian/soapaligner/usr/bin/soap dh_installdeb install -m0755 -d debian/soapaligner/DEBIAN dh_gencontrol install -m0755 -d debian/soapaligner/DEBIAN echo misc:Depends= >> debian/soapaligner.substvars echo misc:Pre-Depends= >> debian/soapaligner.substvars install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/DEBIAN dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -cdebian/control -Pdebian/.debhelper/soapaligner/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=soapaligner-dbgsym "-DDepends=soapaligner (= \${binary:Version})" "-DDescription=debug symbols for soapaligner" -DBuild-Ids=dfd935269b60b8e6d4bd0ee175a372728c93e707 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/control dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -cdebian/control -Pdebian/soapaligner chmod 0644 -- debian/soapaligner/DEBIAN/control dh_md5sums install -m0755 -d debian/soapaligner/DEBIAN cd debian/soapaligner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/soapaligner/DEBIAN/md5sums install -m0755 -d debian/.debhelper/soapaligner/dbgsym-root/DEBIAN cd debian/.debhelper/soapaligner/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/soapaligner .. dpkg-deb --root-owner-group --build debian/.debhelper/soapaligner/dbgsym-root .. dpkg-deb: building package 'soapaligner-dbgsym' in '../soapaligner-dbgsym_2.20-5_amd64.deb'. dpkg-deb: building package 'soapaligner' in '../soapaligner_2.20-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../soapaligner_2.20-5_amd64.buildinfo dpkg-genchanges --build=binary -O../soapaligner_2.20-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3252698 and its subdirectories I: Current time: Fri Dec 26 13:25:26 +14 2025 I: pbuilder-time-stamp: 1766705126 + false + set +x Thu Dec 25 23:25:26 UTC 2025 I: Signing ./b2/soapaligner_2.20-5_amd64.buildinfo as soapaligner_2.20-5_amd64.buildinfo.asc Thu Dec 25 23:25:26 UTC 2025 I: Signed ./b2/soapaligner_2.20-5_amd64.buildinfo as ./b2/soapaligner_2.20-5_amd64.buildinfo.asc Thu Dec 25 23:25:26 UTC 2025 - build #2 for soapaligner/trixie/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Thu Dec 25 23:25:26 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-IsYV3zAB, removing. /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv: total 52 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 16:59 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 17:02 b2 -rw------- 1 jenkins jenkins 38140 Nov 22 16:59 rbuildlog.HKmCzjD -rw-r--r-- 1 jenkins jenkins 2039 Jan 14 2021 soapaligner_2.20-5.dsc /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b1: total 244 -rw-r--r-- 1 jenkins jenkins 34696 Nov 22 16:59 build.log -rw-r--r-- 1 jenkins jenkins 111152 Nov 22 16:59 soapaligner-dbgsym_2.20-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 6408 Nov 22 16:59 soapaligner_2.20-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2039 Nov 22 16:59 soapaligner_2.20-5.dsc -rw-r--r-- 1 jenkins jenkins 4974 Nov 22 16:59 soapaligner_2.20-5_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5856 Nov 22 16:59 soapaligner_2.20-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1543 Nov 22 16:59 soapaligner_2.20-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 52684 Nov 22 16:59 soapaligner_2.20-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1390 Nov 22 16:59 soapaligner_2.20-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b2: total 236 -rw-r--r-- 1 jenkins jenkins 36637 Nov 22 17:02 build.log -rw-r--r-- 1 jenkins jenkins 111152 Nov 22 17:02 soapaligner-dbgsym_2.20-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 6408 Nov 22 17:02 soapaligner_2.20-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2039 Nov 22 17:02 soapaligner_2.20-5.dsc -rw-r--r-- 1 jenkins jenkins 4983 Nov 22 17:02 soapaligner_2.20-5_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5865 Nov 22 17:02 soapaligner_2.20-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1543 Nov 22 17:02 soapaligner_2.20-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 52684 Nov 22 17:02 soapaligner_2.20-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1390 Nov 22 17:02 soapaligner_2.20-5_source.changes Fri Nov 22 17:02:27 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Nov 22 17:02:27 UTC 2024 I: soapaligner_2.20-5_amd64.changes: Format: 1.8 Date: Thu, 14 Jan 2021 17:05:45 +0530 Source: soapaligner Binary: soapaligner soapaligner-dbgsym Architecture: amd64 Version: 2.20-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: soapaligner - aligner of short reads of next generation sequencers Closes: 979681 Changes: soapaligner (2.20-5) unstable; urgency=medium . * Team Upload. * d/p/gcc-10.patch: Fix compilation with GCC 10. - Thank you, Logan Rosen (Closes: #979681) * Declare compliance with policy 4.5.1 * Bump debhelper-compat version to 13 Checksums-Sha1: 657eeafc7aa279ada391ee6896cb2bbf86ac5106 111152 soapaligner-dbgsym_2.20-5_amd64.deb d52eb212ed60e87ab6d7057cc0dc682628d09010 4974 soapaligner_2.20-5_amd64.buildinfo cbc82cc409664d663a409c527660889e4ff7c0a3 52684 soapaligner_2.20-5_amd64.deb Checksums-Sha256: 2d77c6125f24baf1b046f8279e3551b68feec763cbcc19f3e02fce1446427aab 111152 soapaligner-dbgsym_2.20-5_amd64.deb dccde0bbd7212397146a691f5e90da1ca4850b8a5cd44def151d1679079a4b3f 4974 soapaligner_2.20-5_amd64.buildinfo 4220b71a4890c23a08b4b3ba8d36111a4e4853ec7c173b68589c91cde78c7a19 52684 soapaligner_2.20-5_amd64.deb Files: 50d01d5b2c5fe76d0f913ffec0ad6304 111152 debug optional soapaligner-dbgsym_2.20-5_amd64.deb 7b3eccab4471564e62ad74a97abd707c 4974 science optional soapaligner_2.20-5_amd64.buildinfo 399c6543400cbd848967d8c10dfee173 52684 science optional soapaligner_2.20-5_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/soapaligner_2.20-5.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/soapaligner_2.20-5.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/soapaligner_2.20-5.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/soapaligner_2.20-5.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/soapaligner_2.20-5_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/soapaligner_2.20-5.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-22 16:59:52.438136419 +0000 +++ b2/build.log 2024-11-22 17:02:27.067139451 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 22 04:58:19 -12 2024 -I: pbuilder-time-stamp: 1732294699 +I: Current time: Fri Dec 26 13:22:54 +14 2025 +I: pbuilder-time-stamp: 1766704974 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying gcc-10.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2757891/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 25 23:23 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='86f1e42b82104e21b151b008ddc8d17e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2757891' - PS1='# ' - PS2='> ' + INVOCATION_ID=3a113ef77ddf4bbd948c5d93c2e301e1 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3252698 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/pbuilderrc_f9p2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b1 --logfile b1/build.log soapaligner_2.20-5.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/pbuilderrc_6sga --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b2 --logfile b2/build.log soapaligner_2.20-5.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2757891/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -142,7 +174,7 @@ Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] -Fetched 19.8 MB in 4s (4700 kB/s) +Fetched 19.8 MB in 3s (6020 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -273,7 +305,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/soapaligner-2.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapaligner_2.20-5_source.changes +I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/soapaligner-2.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../soapaligner_2.20-5_source.changes dpkg-buildpackage: info: source package soapaligner dpkg-buildpackage: info: source version 2.20-5 dpkg-buildpackage: info: source distribution unstable @@ -283,7 +319,7 @@ debian/rules clean dh clean dh_auto_clean - make -j20 clean + make -j42 clean make[1]: Entering directory '/build/reproducible-path/soapaligner-2.20' rm -f *.o soap make[1]: Leaving directory '/build/reproducible-path/soapaligner-2.20' @@ -306,7 +342,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j20 "INSTALL=install --strip-program=true" + make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapaligner-2.20' cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.c -o SeqIO.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MiscUtilities.c -o MiscUtilities.o @@ -321,14 +357,14 @@ cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soapio.c -o soapio.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWTAln.c -o BWTAln.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Match.c -o Match.o -r250.c: In function 'randlcg': -r250.c:33:41: warning: overflow in conversion from 'long int' to 'int' changes value from '548781581296767' to '724984959' [-Woverflow] - 33 | static int quotient1 = LONG_MAX / 16807L; - | ^~~~~~~~ cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" PairMatch.c -o PairMatch.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" stdaln.c -o stdaln.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" kstring.c -o kstring.o cc -c -flto -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapaligner-2.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soap.c -o soap.o +r250.c: In function 'randlcg': +r250.c:33:41: warning: overflow in conversion from 'long int' to 'int' changes value from '548781581296767' to '724984959' [-Woverflow] + 33 | static int quotient1 = LONG_MAX / 16807L; + | ^~~~~~~~ In file included from extratools.c:1: extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); @@ -341,20 +377,20 @@ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ -In file included from Match.c:17: -Match.h:130:12: warning: inline function 'CheckIns' declared but never defined - 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); - | ^~~~~~~~ In file included from BWTAln.h:23, - from Match.h:23: + from BWTAln.c:1: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function 'altCalMM' declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ +In file included from Match.c:17: +Match.h:130:12: warning: inline function 'CheckIns' declared but never defined + 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); + | ^~~~~~~~ In file included from BWTAln.h:23, - from BWTAln.c:1: + from Match.h:23: extratools.h:84:12: warning: inline function 'CalMismatch' declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ @@ -396,7 +432,7 @@ | ^ make[1]: Leaving directory '/build/reproducible-path/soapaligner-2.20' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-ILsoNbf4 + rm -fr -- /tmp/dh-xdg-rundir-9aoV6KFp create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/soapaligner.substvars @@ -484,12 +520,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3252698/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2757891 and its subdirectories -I: Current time: Fri Nov 22 04:59:51 -12 2024 -I: pbuilder-time-stamp: 1732294791 +I: removing directory /srv/workspace/pbuilder/3252698 and its subdirectories +I: Current time: Fri Dec 26 13:25:26 +14 2025 +I: pbuilder-time-stamp: 1766705126 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/soapaligner_2.20-5.diff: 73.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/soapaligner_2.20-5.diff.gz b2/build.log: 78.5% -- replaced with stdout Compressing the 1st log... b1/build.log: 79.2% -- replaced with stdout Fri Nov 22 17:02:28 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_soapaligner_trixie_amd64_1732294948 + touch /var/log/reproducible-builds/diffoscope_stamp_soapaligner_trixie_amd64_1732294948 + RESULT=0 + systemd-run '--description=diffoscope on soapaligner/2.20-5 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_17-23110 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv --run-session -c jenkins-reproducible-trixie-diffoscope-710f2998-59ea-473e-a0a5-0d1d5726c542 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/dbd-tmp-jIHDLen ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/soapaligner_2.20-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/soapaligner_2.20-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/soapaligner_2.20-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b1/soapaligner_2.20-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b2/soapaligner_2.20-5_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_17-23110.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/soapaligner_2.20-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/soapaligner_2.20-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/soapaligner_2.20-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b1/soapaligner_2.20-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.HP19gwnv/b2/soapaligner_2.20-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.332s) 0.332s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 634ms CPU time consumed: 635ms _ _ ___ ___ __ _ _ __ __ _| (_) __ _ _ __ ___ _ __ / __|/ _ \ / _` | '_ \ / _` | | |/ _` | '_ \ / _ \ '__| \__ \ (_) | (_| | |_) | (_| | | | (_| | | | | __/ | |___/\___/ \__,_| .__/ \__,_|_|_|\__, |_| |_|\___|_| |_| |___/ Fri Nov 22 17:02:29 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 22 17:02:29 UTC 2024 I: soapaligner from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 17:02:30] INFO: Starting at 2024-11-22 17:02:30.155310 [2024-11-22 17:02:30] INFO: Generating the pages of 1 package(s) [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/soapaligner didn't produce a buildlog, even though it has been built. [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:30] INFO: Finished at 2024-11-22 17:02:30.530959, took: 0:00:00.375653 Fri Nov 22 17:02:30 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/soapaligner.html Fri Nov 22 17:02:30 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 22 17:02:30 UTC 2024 I: Submitting 8.0K b1/soapaligner_2.20-5_amd64.buildinfo.asc https://buildinfo.debian.net/d52eb212ed60e87ab6d7057cc0dc682628d09010/soapaligner_2.20-5_amd64 Fri Nov 22 17:02:31 UTC 2024 I: Submitting 8.0K b2/soapaligner_2.20-5_amd64.buildinfo.asc https://buildinfo.debian.net/5b20ff27b3b377cb517e9a7fea5d17c50452cce8/soapaligner_2.20-5_amd64 Fri Nov 22 17:02:32 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 22 17:02:32 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 22 17:02:32 UTC 2024 I: Removing signed soapaligner_2.20-5_amd64.buildinfo.asc files: removed './b1/soapaligner_2.20-5_amd64.buildinfo.asc' removed './b2/soapaligner_2.20-5_amd64.buildinfo.asc' 1732294952 amd64 trixie soapaligner Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/soapaligner_2.20-5.rbuild.log: 75.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/soapaligner_2.20-5.rbuild.log.gz [2024-11-22 17:02:32] INFO: Starting at 2024-11-22 17:02:32.471303 [2024-11-22 17:02:32] INFO: Generating the pages of 1 package(s) [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/soapaligner_2.20-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/soapaligner_2.20-5.diff.gz is missing [2024-11-22 17:02:32] INFO: Finished at 2024-11-22 17:02:32.859408, took: 0:00:00.388111 All cleanup done. Fri Nov 22 17:02:32 UTC 2024 - total duration: 0h 4m 28s. Fri Nov 22 17:02:32 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-TvcvGGlp, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 4min 31.568s CPU time consumed: 6.830s