Running as unit: rb-build-amd64_17-46698.service ==================================================================================== Mon Jul 28 10:45:35 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_17) on jenkins, called using "ionos1-amd64 ionos5-amd64" as arguments. Mon Jul 28 10:45:35 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-XiIskaZR" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Jul 28 10:45:35 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Mon Jul 28 10:45:35 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-1fHSRt' Mon Jul 28 10:45:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Mon Jul 28 10:45:36 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-LHfv77' ok, let's check if qtltools is building anywhere yet… ok, qtltools is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of qtltools in trixie on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Mon Jul 28 10:45:52 UTC 2025 I: starting to build qtltools/trixie/amd64 on jenkins on '2025-07-28 10:45' Mon Jul 28 10:45:52 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/46698/console.log 1753699552 amd64 trixie qtltools Mon Jul 28 10:45:52 UTC 2025 I: Downloading source for trixie/qtltools=1.3.1+dfsg-4 --2025-07-28 10:45:52-- http://deb.debian.org/debian/pool/main/q/qtltools/qtltools_1.3.1%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2215 (2.2K) [text/prs.lines.tag] Saving to: ‘qtltools_1.3.1+dfsg-4.dsc’ 0K .. 100% 283M=0s 2025-07-28 10:45:52 (283 MB/s) - ‘qtltools_1.3.1+dfsg-4.dsc’ saved [2215/2215] --2025-07-28 10:45:52-- http://deb.debian.org/debian/pool/main/q/qtltools/qtltools_1.3.1%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2215 (2.2K) [text/prs.lines.tag] Saving to: ‘qtltools_1.3.1+dfsg-4.dsc’ 0K .. 100% 283M=0s 2025-07-28 10:45:52 (283 MB/s) - ‘qtltools_1.3.1+dfsg-4.dsc’ saved [2215/2215] Mon Jul 28 10:45:52 UTC 2025 I: qtltools_1.3.1+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: qtltools Binary: qtltools, qtltools-example Architecture: any all Version: 1.3.1+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://qtltools.github.io/qtltools/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/qtltools Vcs-Git: https://salsa.debian.org/med-team/qtltools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev Package-List: qtltools deb science optional arch=any qtltools-example deb doc optional arch=all Checksums-Sha1: 76f2770a948931a5642542272852cafab3855be1 141108 qtltools_1.3.1+dfsg.orig.tar.xz 5235cddd3aab431de8823dbfe8a856542f4fecb0 13556256 qtltools_1.3.1+dfsg-4.debian.tar.xz Checksums-Sha256: 55a1e683d2d2ae40385e147992209f007e994749bbb8981e4359db862b988d2a 141108 qtltools_1.3.1+dfsg.orig.tar.xz 359c5c7a1ab1a5b7bc08df39b976bf3cf3d05204a42facd16bcae5f8dd911050 13556256 qtltools_1.3.1+dfsg-4.debian.tar.xz Files: 0e567fb0f71a6486c834b999820bd8cc 141108 qtltools_1.3.1+dfsg.orig.tar.xz d672c8dcf4df7fc6900d65ff7f124cd9 13556256 qtltools_1.3.1+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOOFrcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEh0w//a7LplwnqHbmnjtQJ7GAUTzZSs6j7GnRq K54oviXSzVq8+F0iL9F6VKZmtig7p2BAdzMwEDeHLULy0A6L97BXLmg5heljmSQs uP09cQLDdNQhokRbls5WiNd6Ea3NxIjbjpugoz5y2mjOx4j6TjDN/AyBvmXdoi2Y fkzb6dUVYpJmG3Ppu1lYYiyVgqr6uTyZe97fEOprnWmzc56Wh//8h8Deewiz1+12 6Eg0iw+DmpMwVzbnXdZM1qoMKMBN+0ASspvTJ8KCVQfHYQlV42qX7043b1eXep2V no+aZTrF81r3VIaN04wqktLJu4Ou8wBe/kQ1D1XM7H0CciG+Fl0+PFgMVyojmTbH Auq7thJfl561HElTnnxJ7cG35NPF1T2zkkCAQtn0J/RMzHaXhkaS3gT27R9KlRad GWADOhRCUn9dkUzSfQfcqzWVNPblV+/FO775Aoa9RohyshGnsNsMwMgWwwKBiJAz iISPskmvA4QoyxKPwd2HkaPOeXYU8u5YHkcQ1DNm0+b/rmxL3n/Y3J9m29Bq4y5E jQSoX7aa23KX8ebvT6BOTAQjWJqROEnF0sG6+I+bc7qSRBb+GS+JIwIrVlosThpk SyajskjnX3LVMjazXHs9ERGgdu5TtrrDlVUm3cEQPqIFyULHCa+Y7s94bMXH9dix VGNKM1ArXLs= =+AGy -----END PGP SIGNATURE----- Mon Jul 28 10:45:52 UTC 2025 I: Checking whether the package is not for us Mon Jul 28 10:45:52 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Mon Jul 28 10:45:52 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Mon Jul 28 10:45:52 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Mon Jul 28 10:45:52 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-zxaSeI' ==================================================================================== Mon Jul 28 10:45:53 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 qtltools trixie /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO 1.3.1+dfsg-4" as arguments. Mon Jul 28 10:45:53 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-qUb6vV2p" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Jul 28 10:45:53 UTC 2025 I: Downloading source for trixie/qtltools=1.3.1+dfsg-4 Reading package lists... NOTICE: 'qtltools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/qtltools.git Please use: git clone https://salsa.debian.org/med-team/qtltools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 13.7 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (dsc) [2215 B] Get:2 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (tar) [141 kB] Get:3 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (diff) [13.6 MB] Fetched 13.7 MB in 0s (74.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'qtltools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/qtltools.git Please use: git clone https://salsa.debian.org/med-team/qtltools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 13.7 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (dsc) [2215 B] Get:2 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (tar) [141 kB] Get:3 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (diff) [13.6 MB] Fetched 13.7 MB in 0s (74.2 MB/s) Download complete and in download only mode ============================================================================= Building qtltools in trixie on amd64 on ionos1-amd64 now. Date: Mon Jul 28 10:45:54 UTC 2025 Date UTC: Mon Jul 28 10:45:54 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 27 22:45:54 -12 2025 I: pbuilder-time-stamp: 1753699554 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [qtltools_1.3.1+dfsg-4.dsc] I: copying [./qtltools_1.3.1+dfsg.orig.tar.xz] I: copying [./qtltools_1.3.1+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./qtltools_1.3.1+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting qtltools in qtltools-1.3.1+dfsg dpkg-source: info: unpacking qtltools_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking qtltools_1.3.1+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile_config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1702457/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='509f848c93be4a0ba4f59d5986a7083c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1702457' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/pbuilderrc_xviU --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b1 --logfile b1/build.log qtltools_1.3.1+dfsg-4.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1702457/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on r-mathlib; however: Package r-mathlib is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-mathlib{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix r-base-core r-base-dev wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 70.3 MB of archives. After unpacking 401 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b2 [25.0 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-3+b2 [56.7 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2 [698 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 37 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-4 [160 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.1-4 [170 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 52 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.2 [347 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4.2 [375 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-2 [598 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1.1 [116 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.11.0-1 [34.0 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libngtcp2-dev amd64 1.11.0-1 [179 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.5.1-1 [2954 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libcurl4-gnutls-dev amd64 8.14.1-2 [503 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-5 [1034 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libgsl-dev amd64 2.8+dfsg-5 [1222 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.8.1-1 [348 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 r-mathlib amd64 4.5.0-3 [2723 kB] Fetched 70.3 MB in 16s (4513 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../015-libcom-err2_1.47.2-3+b2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b2) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../016-comerr-dev_2.1-1.47.2-3+b2_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.2-3+b2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../021-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../023-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../024-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../025-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../026-libxml2_2.12.7+dfsg+really2.9.14-2_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2) ... Selecting previously unselected package gettext. Preparing to unpack .../027-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../028-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../029-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../030-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libicu76:amd64. Preparing to unpack .../031-libicu76_76.1-4_amd64.deb ... Unpacking libicu76:amd64 (76.1-4) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../032-icu-devtools_76.1-4_amd64.deb ... Unpacking icu-devtools (76.1-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../033-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../034-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../035-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../036-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../037-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../038-libgssrpc4t64_1.21.3-5_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../039-libkadm5clnt-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../040-libkdb5-10t64_1.21.3-5_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../041-libkadm5srv-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../042-krb5-multidev_1.21.3-5_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-5) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../043-libblas3_3.12.1-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-4) ... Selecting previously unselected package libblas-dev:amd64. Preparing to unpack .../044-libblas-dev_3.12.1-4_amd64.deb ... Unpacking libblas-dev:amd64 (3.12.1-4) ... Selecting previously unselected package libboost1.83-dev:amd64. Preparing to unpack .../045-libboost1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-regex1.83.0:amd64. Preparing to unpack .../046-libboost-regex1.83.0_1.83.0-4.2_amd64.deb ... Unpacking libboost-regex1.83.0:amd64 (1.83.0-4.2) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../047-libicu-dev_76.1-4_amd64.deb ... Unpacking libicu-dev:amd64 (76.1-4) ... Selecting previously unselected package libboost-regex1.83-dev:amd64. Preparing to unpack .../048-libboost-regex1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-iostreams1.83-dev:amd64. Preparing to unpack .../049-libboost-iostreams1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... 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Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/qtltools-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../qtltools_1.3.1+dfsg-4_source.changes dpkg-buildpackage: info: source package qtltools dpkg-buildpackage: info: source version 1.3.1+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f debian/upstream.example/examples.tar.xz dh_auto_clean make -j40 clean make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f obj/*.o bin/QTLtools make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/obj/ mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/bin/ dh_auto_build make -j40 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' g++ -std=c++0x -o obj/QTLtools.o -c src/QTLtools.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_management.o -c src/mode_ase/ase_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_blacklist.o -c src/mode_ase/ase_read_blacklist.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_fasta.o -c src/mode_ase/ase_read_fasta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_genotypes.o -c src/mode_ase/ase_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_gtf.o -c src/mode_ase/ase_read_gtf.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_sequences.o -c src/mode_ase/ase_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_run_analyses.o -c src/mode_ase/ase_run_analyses.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_main.o -c src/mode_bamstat/bamstat_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_read_annotations.o -c src/mode_bamstat/bamstat_read_annotations.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_read_bam.o -c src/mode_bamstat/bamstat_read_bam.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_write_output.o -c src/mode_bamstat/bamstat_write_output.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_chunking.o -c src/mode_cis/cis_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_collapse_phenotypes.o -c src/mode_cis/cis_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_conditionnal_pass.o -c src/mode_cis/cis_conditionnal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_initilization.o -c src/mode_cis/cis_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_learn_beta.o -c src/mode_cis/cis_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_learn_dof.o -c src/mode_cis/cis_learn_dof.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_main.o -c src/mode_cis/cis_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_management.o -c src/mode_cis/cis_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_nominal_pass.o -c src/mode_cis/cis_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_permutation_pass.o -c src/mode_cis/cis_permutation_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_covariates.o -c src/mode_cis/cis_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_genotypes.o -c src/mode_cis/cis_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_phenotypes.o -c src/mode_cis/cis_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_thresholds.o -c src/mode_cis/cis_read_thresholds.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_main.o -c src/mode_correct/correct_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_management.o -c src/mode_correct/correct_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_processing.o -c src/mode_correct/correct_processing.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_read_covariates.o -c src/mode_correct/correct_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_main.o -c src/mode_extract/extract_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_managment.o -c src/mode_extract/extract_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_read_data.o -c src/mode_extract/extract_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_write.o -c src/mode_extract/extract_write.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_main.o -c src/mode_fdensity/fdensity_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_process.o -c src/mode_fdensity/fdensity_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_read_annotation.o -c src/mode_fdensity/fdensity_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_read_qtl.o -c src/mode_fdensity/fdensity_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_write.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_read_annotations.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_thresholds.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_permutation_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_gtf.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/common/data.h:19, from src/common/data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_learn_dof.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_run_analyses.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_conditionnal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_processing.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_main.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_read_qtl.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_read_bam.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_blacklist.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_write_output.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_fasta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_process.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/QTLtools.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_correct/correct_processing.cpp: In member function 'void correct_data::processVCF(std::string, std::string)': src/mode_correct/correct_processing.cpp:127:22: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 127 | bcf_hdr_write(fp, hdr_new); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ g++ -std=c++0x -o obj/fenrich_process.o -c src/mode_fenrich/fenrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_main.o -c src/mode_genrich/genrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_process.o -c src/mode_genrich/genrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_qtl.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_binning_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_tss.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/gwas_analysis_pass.o -c src/mode_gwas/gwas_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/gwas_initilization.o -c src/mode_gwas/gwas_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_routines.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_auxillliary_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/gwas_main.o -c src/mode_gwas/gwas_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/gwas_managment.o -c src/mode_gwas/gwas_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x -o obj/gwas_read_covariates.o -c src/mode_gwas/gwas_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_reference_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/gwas_read_phenotypes.o -c src/mode_gwas/gwas_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/match_main.o -c src/mode_match/match_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/match_process.o -c src/mode_match/match_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/quan_readBAM.o -c src/mode_quan/quan_readBAM.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_readGTF.o -c src/mode_quan/quan_readGTF.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_writeResults.o -c src/mode_quan/quan_writeResults.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_readBAM.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/quan_xxhash.o -c src/mode_quan/quan_xxhash.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_pca.h:22, from src/mode_pca/pca_pca.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_readGTF.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_writeResults.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rep_initilization.o -c src/mode_rep/rep_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_xxhash.cpp:109: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_qtls.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_common.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_gwas_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' src/mode_gwas/gwas_analysis_pass.cpp: In member function 'void gwas_data::runGwasPassOnVCF(std::string, std::string)': src/mode_gwas/gwas_analysis_pass.cpp:28:28: warning: ignoring return value of 'int bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)' declared with attribute 'warn_unused_result' [-Wunused-result] 28 | bcf_hdr_set_samples(hdr, concat_id.c_str(), 0); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_gwas_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_management.o -c src/mode_rtc/rtc_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_mergeQTL_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_mergeQTL_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_sampling.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_adjust.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_read_covariates.o -c src/mode_trans/trans_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_read_phenotypes.o -c src/mode_trans/trans_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_read_samples.o -c src/mode_trans/trans_read_samples.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_samples.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_main.o -c src/mode_union/union_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_management.o -c src/mode_union/union_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from src/mode_pca/pca_pca.h:21: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_union.o -c src/mode_union/union_union.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_union.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x obj/QTLtools.o obj/data.o obj/ase_main.o obj/ase_management.o obj/ase_read_blacklist.o obj/ase_read_fasta.o obj/ase_read_genotypes.o obj/ase_read_gtf.o obj/ase_read_sequences.o obj/ase_run_analyses.o obj/bamstat_main.o obj/bamstat_read_annotations.o obj/bamstat_read_bam.o obj/bamstat_write_output.o obj/cis_chunking.o obj/cis_collapse_phenotypes.o obj/cis_conditionnal_pass.o obj/cis_initilization.o obj/cis_learn_beta.o obj/cis_learn_dof.o obj/cis_main.o obj/cis_management.o obj/cis_nominal_pass.o obj/cis_permutation_pass.o obj/cis_read_covariates.o obj/cis_read_genotypes.o obj/cis_read_phenotypes.o obj/cis_read_thresholds.o obj/correct_main.o obj/correct_management.o obj/correct_processing.o obj/correct_read_covariates.o obj/extract_main.o obj/extract_managment.o obj/extract_read_data.o obj/extract_write.o obj/fdensity_main.o obj/fdensity_process.o obj/fdensity_read_annotation.o obj/fdensity_read_qtl.o obj/fenrich_main.o obj/fenrich_management.o obj/fenrich_process.o obj/fenrich_read_annotation.o obj/fenrich_read_qtl.o obj/fenrich_read_tss.o obj/genrich_binning_process.o obj/genrich_main.o obj/genrich_process.o obj/genrich_read_auxillliary_data.o obj/genrich_read_phenotypes.o obj/genrich_read_reference_genotypes.o obj/genrich_routines.o obj/gwas_analysis_pass.o obj/gwas_initilization.o obj/gwas_main.o obj/gwas_managment.o obj/gwas_read_covariates.o obj/gwas_read_phenotypes.o obj/match_main.o obj/match_managment.o obj/match_process.o obj/match_read_genotypes.o obj/match_read_sequences.o obj/pca_main.o obj/pca_management.o obj/pca_pca.o obj/pca_read_data.o obj/quan_main.o obj/quan_readBAM.o obj/quan_readGTF.o obj/quan_writeResults.o obj/quan_xxhash.o obj/rep_initilization.o obj/rep_main.o obj/rep_management.o obj/rep_nominal_pass.o obj/rep_read_covariates.o obj/rep_read_genotypes.o obj/rep_read_phenotypes.o obj/rep_read_qtls.o obj/rtc_chunking.o obj/rtc_collapse_phenotypes.o obj/rtc_common.o obj/rtc_gwas_cis.o obj/rtc_gwas_trans.o obj/rtc_initilization.o obj/rtc_main.o obj/rtc_management.o obj/rtc_mergeQTL_cis.o obj/rtc_mergeQTL_trans.o obj/rtc_read_covariates.o obj/rtc_read_genotypes.o obj/rtc_read_get_hotspots.o obj/rtc_read_phenotypes.o obj/rtc_sampling.o obj/trans_adjust.o obj/trans_analysis_pass.o obj/trans_chunking.o obj/trans_initilization.o obj/trans_learn_beta.o obj/trans_main.o obj/trans_managment.o obj/trans_read_covariates.o obj/trans_read_phenotypes.o obj/trans_read_samples.o obj/union_initilization.o obj/union_main.o obj/union_management.o obj/union_read_covariates.o obj/union_read_genotypes.o obj/union_read_get_hotspots.o obj/union_read_phenotypes.o obj/union_union.o -lRmath -lhts -lboost_iostreams -lboost_program_options -o bin/QTLtools -lz -lgsl -lblas -lbz2 -lm -lpthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j40 install DESTDIR=/build/reproducible-path/qtltools-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' mkdir -p -m 755 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install --strip-program=true bin/QTLtools /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 755 scripts/qtltools_runFDR_ftrans.R scripts/qtltools_plotTrans.R scripts/qtltools_runFDR_cis.R scripts/qtltools_runFDR_atrans.R /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 doc/QTLtools-mbv.1 doc/QTLtools-gwas.1 doc/QTLtools-rtc-union.1 doc/QTLtools-pca.1 doc/QTLtools-extract.1 doc/QTLtools-bamstat.1 doc/QTLtools-fenrich.1 doc/QTLtools-fdensity.1 doc/QTLtools.1 doc/QTLtools-quan.1 doc/QTLtools-ase.1 doc/QTLtools-rep.1 doc/QTLtools-trans.1 doc/QTLtools-correct.1 doc/QTLtools-rtc.1 doc/QTLtools-cis.1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 doc/QTLtools_bash_autocomplete.bash /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install: WARNING: ignoring --strip-program option as -s option was not specified make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' cd debian/upstream.example && find -type f | LC_ALL=C sort | grep -v examples.tar.xz | \ tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz ./genes.50percent.chr22.bed.gz ./genes.50percent.chr22.bed.gz.tbi ./genes.covariates.pc50.txt.gz ./genes.simulated.chr22.bed.gz ./genes.simulated.chr22.bed.gz.tbi ./genotypes.chr22.vcf.gz ./genotypes.chr22.vcf.gz.tbi dh_install make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'qtltools-example' in '../qtltools-example_1.3.1+dfsg-4_all.deb'. dpkg-deb: building package 'qtltools' in '../qtltools_1.3.1+dfsg-4_amd64.deb'. dpkg-deb: building package 'qtltools-dbgsym' in '../qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../qtltools_1.3.1+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../qtltools_1.3.1+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1702457 and its subdirectories I: Current time: Sun Jul 27 23:16:13 -12 2025 I: pbuilder-time-stamp: 1753701373 Mon Jul 28 11:16:13 UTC 2025 I: Signing ./b1/qtltools_1.3.1+dfsg-4_amd64.buildinfo as qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc Mon Jul 28 11:16:13 UTC 2025 I: Signed ./b1/qtltools_1.3.1+dfsg-4_amd64.buildinfo as ./b1/qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc Mon Jul 28 11:16:13 UTC 2025 - build #1 for qtltools/trixie/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Mon Jul 28 11:16:13 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-qUb6vV2p, removing. /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jul 28 11:16 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jul 28 10:45 b2 -rw-r--r-- 1 jenkins jenkins 2215 Dec 5 2022 qtltools_1.3.1+dfsg-4.dsc -rw------- 1 jenkins jenkins 3345 Jul 28 10:45 rbuildlog.pOTzBdg /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b1: total 140312 -rw-r--r-- 1 jenkins jenkins 247596 Jul 28 11:16 build.log -rw-r--r-- 1 jenkins jenkins 115262396 Jul 28 11:16 qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 13558376 Jul 28 11:16 qtltools-example_1.3.1+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 13556256 Jul 28 11:16 qtltools_1.3.1+dfsg-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2215 Jul 28 11:16 qtltools_1.3.1+dfsg-4.dsc -rw-r--r-- 1 jenkins jenkins 7917 Jul 28 11:16 qtltools_1.3.1+dfsg-4_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8799 Jul 28 11:16 qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1905 Jul 28 11:16 qtltools_1.3.1+dfsg-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1011020 Jul 28 11:16 qtltools_1.3.1+dfsg-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 1362 Jul 28 11:16 qtltools_1.3.1+dfsg-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b2: total 0 Mon Jul 28 11:16:14 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 27 22:45:54 -12 2025 I: pbuilder-time-stamp: 1753699554 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [qtltools_1.3.1+dfsg-4.dsc] I: copying [./qtltools_1.3.1+dfsg.orig.tar.xz] I: copying [./qtltools_1.3.1+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./qtltools_1.3.1+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting qtltools in qtltools-1.3.1+dfsg dpkg-source: info: unpacking qtltools_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking qtltools_1.3.1+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile_config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1702457/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='509f848c93be4a0ba4f59d5986a7083c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1702457' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/pbuilderrc_xviU --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b1 --logfile b1/build.log qtltools_1.3.1+dfsg-4.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1702457/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on r-mathlib; however: Package r-mathlib is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-mathlib{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix r-base-core r-base-dev wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 70.3 MB of archives. After unpacking 401 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b2 [25.0 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-3+b2 [56.7 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2 [698 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 37 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-4 [160 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.1-4 [170 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 52 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.2 [347 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4.2 [375 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-2 [598 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1.1 [116 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.11.0-1 [34.0 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libngtcp2-dev amd64 1.11.0-1 [179 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.5.1-1 [2954 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libcurl4-gnutls-dev amd64 8.14.1-2 [503 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-5 [1034 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libgsl-dev amd64 2.8+dfsg-5 [1222 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.8.1-1 [348 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 r-mathlib amd64 4.5.0-3 [2723 kB] Fetched 70.3 MB in 16s (4513 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../005-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../008-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../015-libcom-err2_1.47.2-3+b2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b2) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../016-comerr-dev_2.1-1.47.2-3+b2_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.2-3+b2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. 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Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libblas-dev:amd64 (3.12.1-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libngtcp2-dev:amd64 (1.11.0-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libeigen3-dev (3.4.0-5) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-2) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libicu-dev:amd64 (76.1-4) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-2) ... Setting up debhelper (13.24.2) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.11.0-1) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:amd64 (8.14.1-2) ... Setting up libhts-dev:amd64 (1.21+ds-1) ... Processing triggers for libc-bin (2.41-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/qtltools-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../qtltools_1.3.1+dfsg-4_source.changes dpkg-buildpackage: info: source package qtltools dpkg-buildpackage: info: source version 1.3.1+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f debian/upstream.example/examples.tar.xz dh_auto_clean make -j40 clean make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f obj/*.o bin/QTLtools make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/obj/ mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/bin/ dh_auto_build make -j40 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' g++ -std=c++0x -o obj/QTLtools.o -c src/QTLtools.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_management.o -c src/mode_ase/ase_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_blacklist.o -c src/mode_ase/ase_read_blacklist.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_fasta.o -c src/mode_ase/ase_read_fasta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_genotypes.o -c src/mode_ase/ase_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_gtf.o -c src/mode_ase/ase_read_gtf.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_sequences.o -c src/mode_ase/ase_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_run_analyses.o -c src/mode_ase/ase_run_analyses.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_main.o -c src/mode_bamstat/bamstat_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_read_annotations.o -c src/mode_bamstat/bamstat_read_annotations.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_read_bam.o -c src/mode_bamstat/bamstat_read_bam.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_write_output.o -c src/mode_bamstat/bamstat_write_output.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_chunking.o -c src/mode_cis/cis_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_collapse_phenotypes.o -c src/mode_cis/cis_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_conditionnal_pass.o -c src/mode_cis/cis_conditionnal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_initilization.o -c src/mode_cis/cis_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_learn_beta.o -c src/mode_cis/cis_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_learn_dof.o -c src/mode_cis/cis_learn_dof.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_main.o -c src/mode_cis/cis_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_management.o -c src/mode_cis/cis_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_nominal_pass.o -c src/mode_cis/cis_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_permutation_pass.o -c src/mode_cis/cis_permutation_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_covariates.o -c src/mode_cis/cis_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_genotypes.o -c src/mode_cis/cis_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_phenotypes.o -c src/mode_cis/cis_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_thresholds.o -c src/mode_cis/cis_read_thresholds.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_main.o -c src/mode_correct/correct_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_management.o -c src/mode_correct/correct_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_processing.o -c src/mode_correct/correct_processing.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_read_covariates.o -c src/mode_correct/correct_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_main.o -c src/mode_extract/extract_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_managment.o -c src/mode_extract/extract_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_read_data.o -c src/mode_extract/extract_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_write.o -c src/mode_extract/extract_write.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_main.o -c src/mode_fdensity/fdensity_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_process.o -c src/mode_fdensity/fdensity_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_read_annotation.o -c src/mode_fdensity/fdensity_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_read_qtl.o -c src/mode_fdensity/fdensity_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_write.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_read_annotations.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_thresholds.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_permutation_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_gtf.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/common/data.h:19, from src/common/data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_learn_dof.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_run_analyses.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_conditionnal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_processing.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_main.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_read_qtl.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_read_bam.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_blacklist.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_write_output.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_fasta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_process.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/QTLtools.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_correct/correct_processing.cpp: In member function 'void correct_data::processVCF(std::string, std::string)': src/mode_correct/correct_processing.cpp:127:22: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 127 | bcf_hdr_write(fp, hdr_new); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ g++ -std=c++0x -o obj/fenrich_process.o -c src/mode_fenrich/fenrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_main.o -c src/mode_genrich/genrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_process.o -c src/mode_genrich/genrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_qtl.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_binning_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_tss.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/gwas_analysis_pass.o -c src/mode_gwas/gwas_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/gwas_initilization.o -c src/mode_gwas/gwas_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_routines.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_auxillliary_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/gwas_main.o -c src/mode_gwas/gwas_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/gwas_managment.o -c src/mode_gwas/gwas_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x -o obj/gwas_read_covariates.o -c src/mode_gwas/gwas_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_reference_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/gwas_read_phenotypes.o -c src/mode_gwas/gwas_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/match_main.o -c src/mode_match/match_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/match_process.o -c src/mode_match/match_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/quan_readBAM.o -c src/mode_quan/quan_readBAM.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_readGTF.o -c src/mode_quan/quan_readGTF.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_writeResults.o -c src/mode_quan/quan_writeResults.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_readBAM.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/quan_xxhash.o -c src/mode_quan/quan_xxhash.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_pca.h:22, from src/mode_pca/pca_pca.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_readGTF.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_writeResults.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rep_initilization.o -c src/mode_rep/rep_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_xxhash.cpp:109: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_qtls.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_common.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_gwas_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' src/mode_gwas/gwas_analysis_pass.cpp: In member function 'void gwas_data::runGwasPassOnVCF(std::string, std::string)': src/mode_gwas/gwas_analysis_pass.cpp:28:28: warning: ignoring return value of 'int bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)' declared with attribute 'warn_unused_result' [-Wunused-result] 28 | bcf_hdr_set_samples(hdr, concat_id.c_str(), 0); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_gwas_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_management.o -c src/mode_rtc/rtc_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_mergeQTL_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_mergeQTL_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_sampling.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_adjust.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_read_covariates.o -c src/mode_trans/trans_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_read_phenotypes.o -c src/mode_trans/trans_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_read_samples.o -c src/mode_trans/trans_read_samples.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_samples.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_main.o -c src/mode_union/union_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_management.o -c src/mode_union/union_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from src/mode_pca/pca_pca.h:21: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_union.o -c src/mode_union/union_union.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_union.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x obj/QTLtools.o obj/data.o obj/ase_main.o obj/ase_management.o obj/ase_read_blacklist.o obj/ase_read_fasta.o obj/ase_read_genotypes.o obj/ase_read_gtf.o obj/ase_read_sequences.o obj/ase_run_analyses.o obj/bamstat_main.o obj/bamstat_read_annotations.o obj/bamstat_read_bam.o obj/bamstat_write_output.o obj/cis_chunking.o obj/cis_collapse_phenotypes.o obj/cis_conditionnal_pass.o obj/cis_initilization.o obj/cis_learn_beta.o obj/cis_learn_dof.o obj/cis_main.o obj/cis_management.o obj/cis_nominal_pass.o obj/cis_permutation_pass.o obj/cis_read_covariates.o obj/cis_read_genotypes.o obj/cis_read_phenotypes.o obj/cis_read_thresholds.o obj/correct_main.o obj/correct_management.o obj/correct_processing.o obj/correct_read_covariates.o obj/extract_main.o obj/extract_managment.o obj/extract_read_data.o obj/extract_write.o obj/fdensity_main.o obj/fdensity_process.o obj/fdensity_read_annotation.o obj/fdensity_read_qtl.o obj/fenrich_main.o obj/fenrich_management.o obj/fenrich_process.o obj/fenrich_read_annotation.o obj/fenrich_read_qtl.o obj/fenrich_read_tss.o obj/genrich_binning_process.o obj/genrich_main.o obj/genrich_process.o obj/genrich_read_auxillliary_data.o obj/genrich_read_phenotypes.o obj/genrich_read_reference_genotypes.o obj/genrich_routines.o obj/gwas_analysis_pass.o obj/gwas_initilization.o obj/gwas_main.o obj/gwas_managment.o obj/gwas_read_covariates.o obj/gwas_read_phenotypes.o obj/match_main.o obj/match_managment.o obj/match_process.o obj/match_read_genotypes.o obj/match_read_sequences.o obj/pca_main.o obj/pca_management.o obj/pca_pca.o obj/pca_read_data.o obj/quan_main.o obj/quan_readBAM.o obj/quan_readGTF.o obj/quan_writeResults.o obj/quan_xxhash.o obj/rep_initilization.o obj/rep_main.o obj/rep_management.o obj/rep_nominal_pass.o obj/rep_read_covariates.o obj/rep_read_genotypes.o obj/rep_read_phenotypes.o obj/rep_read_qtls.o obj/rtc_chunking.o obj/rtc_collapse_phenotypes.o obj/rtc_common.o obj/rtc_gwas_cis.o obj/rtc_gwas_trans.o obj/rtc_initilization.o obj/rtc_main.o obj/rtc_management.o obj/rtc_mergeQTL_cis.o obj/rtc_mergeQTL_trans.o obj/rtc_read_covariates.o obj/rtc_read_genotypes.o obj/rtc_read_get_hotspots.o obj/rtc_read_phenotypes.o obj/rtc_sampling.o obj/trans_adjust.o obj/trans_analysis_pass.o obj/trans_chunking.o obj/trans_initilization.o obj/trans_learn_beta.o obj/trans_main.o obj/trans_managment.o obj/trans_read_covariates.o obj/trans_read_phenotypes.o obj/trans_read_samples.o obj/union_initilization.o obj/union_main.o obj/union_management.o obj/union_read_covariates.o obj/union_read_genotypes.o obj/union_read_get_hotspots.o obj/union_read_phenotypes.o obj/union_union.o -lRmath -lhts -lboost_iostreams -lboost_program_options -o bin/QTLtools -lz -lgsl -lblas -lbz2 -lm -lpthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j40 install DESTDIR=/build/reproducible-path/qtltools-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' mkdir -p -m 755 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install --strip-program=true bin/QTLtools /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 755 scripts/qtltools_runFDR_ftrans.R scripts/qtltools_plotTrans.R scripts/qtltools_runFDR_cis.R scripts/qtltools_runFDR_atrans.R /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 doc/QTLtools-mbv.1 doc/QTLtools-gwas.1 doc/QTLtools-rtc-union.1 doc/QTLtools-pca.1 doc/QTLtools-extract.1 doc/QTLtools-bamstat.1 doc/QTLtools-fenrich.1 doc/QTLtools-fdensity.1 doc/QTLtools.1 doc/QTLtools-quan.1 doc/QTLtools-ase.1 doc/QTLtools-rep.1 doc/QTLtools-trans.1 doc/QTLtools-correct.1 doc/QTLtools-rtc.1 doc/QTLtools-cis.1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 doc/QTLtools_bash_autocomplete.bash /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install: WARNING: ignoring --strip-program option as -s option was not specified make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' cd debian/upstream.example && find -type f | LC_ALL=C sort | grep -v examples.tar.xz | \ tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz ./genes.50percent.chr22.bed.gz ./genes.50percent.chr22.bed.gz.tbi ./genes.covariates.pc50.txt.gz ./genes.simulated.chr22.bed.gz ./genes.simulated.chr22.bed.gz.tbi ./genotypes.chr22.vcf.gz ./genotypes.chr22.vcf.gz.tbi dh_install make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'qtltools-example' in '../qtltools-example_1.3.1+dfsg-4_all.deb'. dpkg-deb: building package 'qtltools' in '../qtltools_1.3.1+dfsg-4_amd64.deb'. dpkg-deb: building package 'qtltools-dbgsym' in '../qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../qtltools_1.3.1+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../qtltools_1.3.1+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1702457 and its subdirectories I: Current time: Sun Jul 27 23:16:13 -12 2025 I: pbuilder-time-stamp: 1753701373 Mon Jul 28 11:16:15 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Mon Jul 28 11:16:15 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Mon Jul 28 11:16:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Mon Jul 28 11:16:15 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-P9xkFL' ==================================================================================== Sun Aug 30 17:39:16 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "2 qtltools trixie /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO 1.3.1+dfsg-4" as arguments. Sun Aug 30 17:39:16 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-pb5Qtxkq" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Aug 30 17:39:16 UTC 2026 I: Downloading source for trixie/qtltools=1.3.1+dfsg-4 Reading package lists... NOTICE: 'qtltools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/qtltools.git Please use: git clone https://salsa.debian.org/med-team/qtltools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 13.7 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (dsc) [2215 B] Get:2 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (tar) [141 kB] Get:3 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (diff) [13.6 MB] Fetched 13.7 MB in 0s (73.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'qtltools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/qtltools.git Please use: git clone https://salsa.debian.org/med-team/qtltools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 13.7 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (dsc) [2215 B] Get:2 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (tar) [141 kB] Get:3 http://deb.debian.org/debian trixie/main qtltools 1.3.1+dfsg-4 (diff) [13.6 MB] Fetched 13.7 MB in 0s (73.9 MB/s) Download complete and in download only mode ============================================================================= Re-Building qtltools in trixie on amd64 on ionos5-amd64 now. Date: Sun Aug 30 17:39:16 UTC 2026 Date UTC: Sun Aug 30 17:39:16 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/pbuilderrc_8ZYK + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' qtltools = debian-installer -o qtltools = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' qtltools = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/pbuilderrc_8ZYK --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b2 --logfile b2/build.log qtltools_1.3.1+dfsg-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 31 07:39:16 +14 2026 I: pbuilder-time-stamp: 1788111556 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [qtltools_1.3.1+dfsg-4.dsc] I: copying [./qtltools_1.3.1+dfsg.orig.tar.xz] I: copying [./qtltools_1.3.1+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./qtltools_1.3.1+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting qtltools in qtltools-1.3.1+dfsg dpkg-source: info: unpacking qtltools_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking qtltools_1.3.1+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile_config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Aug 30 17:39 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=12386adfe1de47f8bd03e943a29f5577 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2196584 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/pbuilderrc_8ZYK --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b2 --logfile b2/build.log qtltools_1.3.1+dfsg-4.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on r-mathlib; however: Package r-mathlib is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-mathlib{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix r-base-core r-base-dev wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 70.3 MB of archives. After unpacking 401 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b2 [25.0 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-3+b2 [56.7 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2 [698 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 37 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-4 [160 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.1-4 [170 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 52 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.2 [347 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4.2 [375 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-2 [598 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1.1 [116 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.11.0-1 [34.0 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libngtcp2-dev amd64 1.11.0-1 [179 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.5.1-1 [2954 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libcurl4-gnutls-dev amd64 8.14.1-2 [503 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-5 [1034 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libgsl-dev amd64 2.8+dfsg-5 [1222 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.8.1-1 [348 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 r-mathlib amd64 4.5.0-3 [2723 kB] Fetched 70.3 MB in 1s (104 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../066-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../067-libngtcp2-16_1.11.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../068-libngtcp2-crypto-gnutls8_1.11.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../069-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../070-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. 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Unpacking libgnutls-openssl27t64:amd64 (3.8.9-3) ... Selecting previously unselected package libidn2-dev:amd64. Preparing to unpack .../077-libidn2-dev_2.3.8-2_amd64.deb ... Unpacking libidn2-dev:amd64 (2.3.8-2) ... Selecting previously unselected package libp11-kit-dev:amd64. Preparing to unpack .../078-libp11-kit-dev_0.25.5-3_amd64.deb ... Unpacking libp11-kit-dev:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:amd64. Preparing to unpack .../079-libtasn1-6-dev_4.20.0-2_amd64.deb ... Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../080-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../081-libgmp-dev_2%3a6.3.0+dfsg-3_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package nettle-dev:amd64. 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Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libblas-dev:amd64 (3.12.1-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libngtcp2-dev:amd64 (1.11.0-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libeigen3-dev (3.4.0-5) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-2) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libicu-dev:amd64 (76.1-4) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4.2) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-2) ... Setting up debhelper (13.24.2) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.11.0-1) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:amd64 (8.14.1-2) ... Setting up libhts-dev:amd64 (1.21+ds-1) ... Processing triggers for libc-bin (2.41-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/qtltools-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../qtltools_1.3.1+dfsg-4_source.changes dpkg-buildpackage: info: source package qtltools dpkg-buildpackage: info: source version 1.3.1+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f debian/upstream.example/examples.tar.xz dh_auto_clean make -j42 clean make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f obj/*.o bin/QTLtools make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/obj/ mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/bin/ dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' g++ -std=c++0x -o obj/QTLtools.o -c src/QTLtools.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_management.o -c src/mode_ase/ase_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_blacklist.o -c src/mode_ase/ase_read_blacklist.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_fasta.o -c src/mode_ase/ase_read_fasta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_genotypes.o -c src/mode_ase/ase_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_gtf.o -c src/mode_ase/ase_read_gtf.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_read_sequences.o -c src/mode_ase/ase_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_run_analyses.o -c src/mode_ase/ase_run_analyses.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_main.o -c src/mode_bamstat/bamstat_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_read_annotations.o -c src/mode_bamstat/bamstat_read_annotations.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_read_bam.o -c src/mode_bamstat/bamstat_read_bam.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/bamstat_write_output.o -c src/mode_bamstat/bamstat_write_output.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_chunking.o -c src/mode_cis/cis_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_collapse_phenotypes.o -c src/mode_cis/cis_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_conditionnal_pass.o -c src/mode_cis/cis_conditionnal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_initilization.o -c src/mode_cis/cis_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_learn_beta.o -c src/mode_cis/cis_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_learn_dof.o -c src/mode_cis/cis_learn_dof.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_main.o -c src/mode_cis/cis_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_management.o -c src/mode_cis/cis_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_nominal_pass.o -c src/mode_cis/cis_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_permutation_pass.o -c src/mode_cis/cis_permutation_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_covariates.o -c src/mode_cis/cis_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_genotypes.o -c src/mode_cis/cis_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_phenotypes.o -c src/mode_cis/cis_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/cis_read_thresholds.o -c src/mode_cis/cis_read_thresholds.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_main.o -c src/mode_correct/correct_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_management.o -c src/mode_correct/correct_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_processing.o -c src/mode_correct/correct_processing.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/correct_read_covariates.o -c src/mode_correct/correct_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_main.o -c src/mode_extract/extract_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_managment.o -c src/mode_extract/extract_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_read_data.o -c src/mode_extract/extract_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/extract_write.o -c src/mode_extract/extract_write.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_main.o -c src/mode_fdensity/fdensity_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_process.o -c src/mode_fdensity/fdensity_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_read_annotation.o -c src/mode_fdensity/fdensity_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_read_qtl.o -c src/mode_fdensity/fdensity_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_permutation_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_run_analyses.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_gtf.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_thresholds.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_read_bam.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_blacklist.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_main.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_fasta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_read_annotations.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_process.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_read_qtl.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_write_output.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/common/data.h:19, from src/common/data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/QTLtools.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_conditionnal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_learn_dof.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_write.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_processing.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' src/mode_correct/correct_processing.cpp: In member function 'void correct_data::processVCF(std::string, std::string)': src/mode_correct/correct_processing.cpp:127:22: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 127 | bcf_hdr_write(fp, hdr_new); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ g++ -std=c++0x -o obj/fenrich_process.o -c src/mode_fenrich/fenrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/genrich_main.o -c src/mode_genrich/genrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_process.o -c src/mode_genrich/genrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_qtl.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_tss.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_binning_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_auxillliary_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/gwas_analysis_pass.o -c src/mode_gwas/gwas_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_reference_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_routines.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/gwas_initilization.o -c src/mode_gwas/gwas_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/gwas_main.o -c src/mode_gwas/gwas_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/gwas_managment.o -c src/mode_gwas/gwas_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/gwas_read_covariates.o -c src/mode_gwas/gwas_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/gwas_read_phenotypes.o -c src/mode_gwas/gwas_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/match_main.o -c src/mode_match/match_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/match_process.o -c src/mode_match/match_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_readBAM.o -c src/mode_quan/quan_readBAM.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_readGTF.o -c src/mode_quan/quan_readGTF.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/quan_writeResults.o -c src/mode_quan/quan_writeResults.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_xxhash.o -c src/mode_quan/quan_xxhash.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_initilization.o -c src/mode_rep/rep_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_pca.h:22, from src/mode_pca/pca_pca.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_readBAM.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_readGTF.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_writeResults.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_xxhash.cpp:109: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_qtls.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_gwas/gwas_analysis_pass.cpp: In member function 'void gwas_data::runGwasPassOnVCF(std::string, std::string)': src/mode_gwas/gwas_analysis_pass.cpp:28:28: warning: ignoring return value of 'int bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)' declared with attribute 'warn_unused_result' [-Wunused-result] 28 | bcf_hdr_set_samples(hdr, concat_id.c_str(), 0); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_common.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_gwas_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_gwas_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_management.o -c src/mode_rtc/rtc_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_mergeQTL_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_mergeQTL_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_sampling.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_adjust.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_read_covariates.o -c src/mode_trans/trans_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_read_phenotypes.o -c src/mode_trans/trans_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/trans_read_samples.o -c src/mode_trans/trans_read_samples.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_main.o -c src/mode_union/union_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_samples.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_management.o -c src/mode_union/union_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/union_union.o -c src/mode_union/union_union.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_union.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from src/mode_pca/pca_pca.h:21: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++0x obj/QTLtools.o obj/data.o obj/ase_main.o obj/ase_management.o obj/ase_read_blacklist.o obj/ase_read_fasta.o obj/ase_read_genotypes.o obj/ase_read_gtf.o obj/ase_read_sequences.o obj/ase_run_analyses.o obj/bamstat_main.o obj/bamstat_read_annotations.o obj/bamstat_read_bam.o obj/bamstat_write_output.o obj/cis_chunking.o obj/cis_collapse_phenotypes.o obj/cis_conditionnal_pass.o obj/cis_initilization.o obj/cis_learn_beta.o obj/cis_learn_dof.o obj/cis_main.o obj/cis_management.o obj/cis_nominal_pass.o obj/cis_permutation_pass.o obj/cis_read_covariates.o obj/cis_read_genotypes.o obj/cis_read_phenotypes.o obj/cis_read_thresholds.o obj/correct_main.o obj/correct_management.o obj/correct_processing.o obj/correct_read_covariates.o obj/extract_main.o obj/extract_managment.o obj/extract_read_data.o obj/extract_write.o obj/fdensity_main.o obj/fdensity_process.o obj/fdensity_read_annotation.o obj/fdensity_read_qtl.o obj/fenrich_main.o obj/fenrich_management.o obj/fenrich_process.o obj/fenrich_read_annotation.o obj/fenrich_read_qtl.o obj/fenrich_read_tss.o obj/genrich_binning_process.o obj/genrich_main.o obj/genrich_process.o obj/genrich_read_auxillliary_data.o obj/genrich_read_phenotypes.o obj/genrich_read_reference_genotypes.o obj/genrich_routines.o obj/gwas_analysis_pass.o obj/gwas_initilization.o obj/gwas_main.o obj/gwas_managment.o obj/gwas_read_covariates.o obj/gwas_read_phenotypes.o obj/match_main.o obj/match_managment.o obj/match_process.o obj/match_read_genotypes.o obj/match_read_sequences.o obj/pca_main.o obj/pca_management.o obj/pca_pca.o obj/pca_read_data.o obj/quan_main.o obj/quan_readBAM.o obj/quan_readGTF.o obj/quan_writeResults.o obj/quan_xxhash.o obj/rep_initilization.o obj/rep_main.o obj/rep_management.o obj/rep_nominal_pass.o obj/rep_read_covariates.o obj/rep_read_genotypes.o obj/rep_read_phenotypes.o obj/rep_read_qtls.o obj/rtc_chunking.o obj/rtc_collapse_phenotypes.o obj/rtc_common.o obj/rtc_gwas_cis.o obj/rtc_gwas_trans.o obj/rtc_initilization.o obj/rtc_main.o obj/rtc_management.o obj/rtc_mergeQTL_cis.o obj/rtc_mergeQTL_trans.o obj/rtc_read_covariates.o obj/rtc_read_genotypes.o obj/rtc_read_get_hotspots.o obj/rtc_read_phenotypes.o obj/rtc_sampling.o obj/trans_adjust.o obj/trans_analysis_pass.o obj/trans_chunking.o obj/trans_initilization.o obj/trans_learn_beta.o obj/trans_main.o obj/trans_managment.o obj/trans_read_covariates.o obj/trans_read_phenotypes.o obj/trans_read_samples.o obj/union_initilization.o obj/union_main.o obj/union_management.o obj/union_read_covariates.o obj/union_read_genotypes.o obj/union_read_get_hotspots.o obj/union_read_phenotypes.o obj/union_union.o -lRmath -lhts -lboost_iostreams -lboost_program_options -o bin/QTLtools -lz -lgsl -lblas -lbz2 -lm -lpthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j42 install DESTDIR=/build/reproducible-path/qtltools-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' mkdir -p -m 755 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install --strip-program=true bin/QTLtools /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 755 scripts/qtltools_runFDR_ftrans.R scripts/qtltools_runFDR_cis.R scripts/qtltools_runFDR_atrans.R scripts/qtltools_plotTrans.R /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 doc/QTLtools-ase.1 doc/QTLtools-rtc-union.1 doc/QTLtools-correct.1 doc/QTLtools-trans.1 doc/QTLtools.1 doc/QTLtools-gwas.1 doc/QTLtools-cis.1 doc/QTLtools-pca.1 doc/QTLtools-fenrich.1 doc/QTLtools-quan.1 doc/QTLtools-rtc.1 doc/QTLtools-rep.1 doc/QTLtools-extract.1 doc/QTLtools-fdensity.1 doc/QTLtools-bamstat.1 doc/QTLtools-mbv.1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 doc/QTLtools_bash_autocomplete.bash /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install: WARNING: ignoring --strip-program option as -s option was not specified make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' cd debian/upstream.example && find -type f | LC_ALL=C sort | grep -v examples.tar.xz | \ tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz ./genes.50percent.chr22.bed.gz ./genes.50percent.chr22.bed.gz.tbi ./genes.covariates.pc50.txt.gz ./genes.simulated.chr22.bed.gz ./genes.simulated.chr22.bed.gz.tbi ./genotypes.chr22.vcf.gz ./genotypes.chr22.vcf.gz.tbi dh_install make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'qtltools-dbgsym' in '../qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb'. dpkg-deb: building package 'qtltools' in '../qtltools_1.3.1+dfsg-4_amd64.deb'. dpkg-deb: building package 'qtltools-example' in '../qtltools-example_1.3.1+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../qtltools_1.3.1+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../qtltools_1.3.1+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2196584 and its subdirectories I: Current time: Mon Aug 31 07:44:47 +14 2026 I: pbuilder-time-stamp: 1788111887 + false + set +x Sun Aug 30 17:44:47 UTC 2026 I: Signing ./b2/qtltools_1.3.1+dfsg-4_amd64.buildinfo as qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc Sun Aug 30 17:44:48 UTC 2026 I: Signed ./b2/qtltools_1.3.1+dfsg-4_amd64.buildinfo as ./b2/qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc Sun Aug 30 17:44:48 UTC 2026 - build #2 for qtltools/trixie/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Sun Aug 30 17:44:48 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-pb5Qtxkq, removing. /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO: total 264 drwxr-xr-x 2 jenkins jenkins 4096 Jul 28 11:16 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jul 28 11:21 b2 -rw-r--r-- 1 jenkins jenkins 2215 Dec 5 2022 qtltools_1.3.1+dfsg-4.dsc -rw------- 1 jenkins jenkins 251227 Jul 28 11:16 rbuildlog.pOTzBdg /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b1: total 140476 -rw-r--r-- 1 jenkins jenkins 247596 Jul 28 11:16 build.log -rw-r--r-- 1 jenkins jenkins 115262396 Jul 28 11:16 qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 13558376 Jul 28 11:16 qtltools-example_1.3.1+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 13556256 Jul 28 11:16 qtltools_1.3.1+dfsg-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2215 Jul 28 11:16 qtltools_1.3.1+dfsg-4.dsc -rw-r--r-- 1 jenkins jenkins 7917 Jul 28 11:16 qtltools_1.3.1+dfsg-4_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8799 Jul 28 11:16 qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1905 Jul 28 11:16 qtltools_1.3.1+dfsg-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1011020 Jul 28 11:16 qtltools_1.3.1+dfsg-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 1362 Jul 28 11:16 qtltools_1.3.1+dfsg-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b2: total 140312 -rw-r--r-- 1 jenkins jenkins 249539 Jul 28 11:21 build.log -rw-r--r-- 1 jenkins jenkins 115262396 Jul 28 11:21 qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 13558376 Jul 28 11:21 qtltools-example_1.3.1+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 13556256 Jul 28 11:21 qtltools_1.3.1+dfsg-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2215 Jul 28 11:21 qtltools_1.3.1+dfsg-4.dsc -rw-r--r-- 1 jenkins jenkins 7930 Jul 28 11:21 qtltools_1.3.1+dfsg-4_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8812 Jul 28 11:21 qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1905 Jul 28 11:21 qtltools_1.3.1+dfsg-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1011020 Jul 28 11:21 qtltools_1.3.1+dfsg-4_amd64.deb -rw-r--r-- 1 jenkins jenkins 1362 Jul 28 11:21 qtltools_1.3.1+dfsg-4_source.changes Mon Jul 28 11:21:49 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Mon Jul 28 11:21:49 UTC 2025 I: qtltools_1.3.1+dfsg-4_amd64.changes: Format: 1.8 Date: Mon, 05 Dec 2022 16:43:51 +0100 Source: qtltools Binary: qtltools qtltools-dbgsym qtltools-example Architecture: amd64 all Version: 1.3.1+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: qtltools - Tool set for molecular QTL discovery and analysis qtltools-example - Tool set for molecular QTL discovery and analysis - example Closes: 1021423 Changes: qtltools (1.3.1+dfsg-4) unstable; urgency=medium . * Team upload. * Recommends: s/r-cran-qvalue/r-bioc-qvalue/ Closes: #1021423 * Move bash completions to correct dir Checksums-Sha1: 915808548a7a7fae9a3b57e0cc501c12447e9088 115262396 qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb 4666540a6562e05c7697c84753ae1d3182f47d43 13558376 qtltools-example_1.3.1+dfsg-4_all.deb fda4f8195f532c2353433adcdcf6db14ef671187 7917 qtltools_1.3.1+dfsg-4_amd64.buildinfo 39e7af91935a383643deb0f8e0147ba33374a366 1011020 qtltools_1.3.1+dfsg-4_amd64.deb Checksums-Sha256: f5ac7c87485ad0a7ce8ff5eb47da7600c69ba3d395f776783ce6313afc87aa18 115262396 qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb 7865d0ba2be68d05f610a526d7d253a86afc71ff7edc1387f8ad0bc478c963f1 13558376 qtltools-example_1.3.1+dfsg-4_all.deb a6091078c840a7f32d1c73ac09d1118a711f9b5998c81b36ec575e56b0efae07 7917 qtltools_1.3.1+dfsg-4_amd64.buildinfo 4b6639f872639f74353368cbcd67c5d21309743de43e47ba5fe970c97c6b1075 1011020 qtltools_1.3.1+dfsg-4_amd64.deb Files: 95862aef010c63c979e6e94a5579e9cc 115262396 debug optional qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb c95ecf9a31b539d873b18436566107cb 13558376 doc optional qtltools-example_1.3.1+dfsg-4_all.deb 2e2b23b6693a1f6fd71f18f02cd13bb2 7917 science optional qtltools_1.3.1+dfsg-4_amd64.buildinfo e2ac1f372e30a8610ff0753ee67043ad 1011020 science optional qtltools_1.3.1+dfsg-4_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/qtltools_1.3.1+dfsg-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/qtltools_1.3.1+dfsg-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/qtltools_1.3.1+dfsg-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/qtltools_1.3.1+dfsg-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/qtltools_1.3.1+dfsg-4_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/qtltools_1.3.1+dfsg-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-07-28 11:16:13.934863416 +0000 +++ b2/build.log 2025-07-28 11:21:48.707256061 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jul 27 22:45:54 -12 2025 -I: pbuilder-time-stamp: 1753699554 +I: Current time: Mon Aug 31 07:39:16 +14 2026 +I: pbuilder-time-stamp: 1788111556 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying Makefile_config.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1702457/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 30 17:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='509f848c93be4a0ba4f59d5986a7083c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1702457' - PS1='# ' - PS2='> ' + INVOCATION_ID=12386adfe1de47f8bd03e943a29f5577 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2196584 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/pbuilderrc_xviU --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b1 --logfile b1/build.log qtltools_1.3.1+dfsg-4.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/pbuilderrc_8ZYK --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b2 --logfile b2/build.log qtltools_1.3.1+dfsg-4.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1702457/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -235,7 +267,7 @@ Get: 110 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.8.1-1 [348 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 r-mathlib amd64 4.5.0-3 [2723 kB] -Fetched 70.3 MB in 16s (4513 kB/s) +Fetched 70.3 MB in 1s (104 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) @@ -700,7 +732,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/qtltools-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../qtltools_1.3.1+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/qtltools-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../qtltools_1.3.1+dfsg-4_source.changes dpkg-buildpackage: info: source package qtltools dpkg-buildpackage: info: source version 1.3.1+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -713,7 +749,7 @@ make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f debian/upstream.example/examples.tar.xz dh_auto_clean - make -j40 clean + make -j42 clean make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f obj/*.o bin/QTLtools make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' @@ -729,7 +765,7 @@ mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/obj/ mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/bin/ dh_auto_build - make -j40 "INSTALL=install --strip-program=true" + make -j42 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' g++ -std=c++0x -o obj/QTLtools.o -c src/QTLtools.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib @@ -771,10 +807,12 @@ g++ -std=c++0x -o obj/fdensity_process.o -c src/mode_fdensity/fdensity_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_read_annotation.o -c src/mode_fdensity/fdensity_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/fdensity_read_qtl.o -c src/mode_fdensity/fdensity_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_nominal_pass.cpp:16: + from src/mode_cis/cis_permutation_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -788,9 +826,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_extract/../common/data.h:19, - from src/mode_extract/extract_data.h:20, - from src/mode_extract/extract_write.cpp:16: + from src/mode_ase/../common/data.h:19, + from src/mode_ase/ase_data.h:20, + from src/mode_ase/ase_run_analyses.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -806,7 +844,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, - from src/mode_ase/ase_main.cpp:16: + from src/mode_ase/ase_read_gtf.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -822,7 +860,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_read_covariates.cpp:16: + from src/mode_cis/cis_read_thresholds.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -838,27 +876,27 @@ In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, - from src/mode_bamstat/bamstat_read_annotations.cpp:16: + from src/mode_bamstat/bamstat_read_bam.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the '< >' +In file included from lib/OTools/otools.h:56, + from src/mode_ase/../common/data.h:19, + from src/mode_ase/ase_data.h:20, + from src/mode_ase/ase_main.cpp:16: +lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 76 | IntervalTree(void) + | ^ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' +lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -In file included from lib/OTools/otools.h:56, - from src/mode_cis/../common/data.h:19, - from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_read_thresholds.cpp:16: -lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 76 | IntervalTree(void) - | ^ -lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ @@ -868,9 +906,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_cis/../common/data.h:19, - from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_permutation_pass.cpp:16: + from src/mode_ase/../common/data.h:19, + from src/mode_ase/ase_data.h:20, + from src/mode_ase/ase_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -884,9 +922,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_ase/../common/data.h:19, - from src/mode_ase/ase_data.h:20, - from src/mode_ase/ase_read_gtf.cpp:16: + from src/mode_cis/../common/data.h:19, + from src/mode_cis/cis_data.h:33, + from src/mode_cis/cis_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -900,8 +938,16 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/common/data.h:19, - from src/common/data.cpp:16: + from src/mode_cis/../common/data.h:19, + from src/mode_cis/cis_data.h:33, + from src/mode_cis/cis_chunking.cpp:16: +lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 76 | IntervalTree(void) + | ^ +In file included from lib/OTools/otools.h:56, + from src/mode_correct/../common/data.h:19, + from src/mode_correct/correct_data.h:24, + from src/mode_correct/correct_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -909,15 +955,31 @@ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ +lib/OTools/interval_tree.h:76:22: note: remove the '< >' lib/OTools/interval_tree.h:82:22: note: remove the '< >' +lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 82 | IntervalTree(const intervalTree& other) { + | ^ +lib/OTools/interval_tree.h:82:22: note: remove the '< >' +lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 118 | intervalVector& ivals, + | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +lib/OTools/interval_tree.h:118:13: note: remove the '< >' +In file included from lib/OTools/otools.h:56, + from src/mode_ase/../common/data.h:19, + from src/mode_ase/ase_data.h:20, + from src/mode_ase/ase_read_blacklist.cpp:16: +lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 76 | IntervalTree(void) + | ^ In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_learn_dof.cpp:16: + from src/mode_cis/cis_main.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -926,6 +988,15 @@ 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the '< >' +lib/OTools/interval_tree.h:76:22: note: remove the '< >' +lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 82 | IntervalTree(const intervalTree& other) { + | ^ +lib/OTools/interval_tree.h:82:22: note: remove the '< >' +lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 118 | intervalVector& ivals, + | ^~~~~~~~~~~~~~ +lib/OTools/interval_tree.h:118:13: note: remove the '< >' lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ @@ -947,9 +1018,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_cis/../common/data.h:19, - from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_management.cpp:16: + from src/mode_ase/../common/data.h:19, + from src/mode_ase/ase_data.h:20, + from src/mode_ase/ase_read_fasta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -963,9 +1034,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_ase/../common/data.h:19, - from src/mode_ase/ase_data.h:20, - from src/mode_ase/ase_management.cpp:16: + from src/mode_extract/../common/data.h:19, + from src/mode_extract/extract_data.h:20, + from src/mode_extract/extract_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -981,7 +1052,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_read_phenotypes.cpp:16: + from src/mode_cis/cis_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -995,9 +1066,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_extract/../common/data.h:19, - from src/mode_extract/extract_data.h:20, - from src/mode_extract/extract_managment.cpp:16: + from src/mode_correct/../common/data.h:19, + from src/mode_correct/correct_data.h:24, + from src/mode_correct/correct_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1011,9 +1082,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_cis/../common/data.h:19, - from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_chunking.cpp:16: + from src/mode_bamstat/../common/data.h:19, + from src/mode_bamstat/bamstat_data.h:20, + from src/mode_bamstat/bamstat_read_annotations.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1027,9 +1098,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_ase/../common/data.h:19, - from src/mode_ase/ase_data.h:20, - from src/mode_ase/ase_run_analyses.cpp:16: + from src/mode_fdensity/../common/data.h:19, + from src/mode_fdensity/fdensity_data.h:20, + from src/mode_fdensity/fdensity_process.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1045,7 +1116,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, - from src/mode_fdensity/fdensity_read_annotation.cpp:16: + from src/mode_fdensity/fdensity_read_qtl.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1061,7 +1132,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_conditionnal_pass.cpp:16: + from src/mode_cis/cis_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1075,9 +1146,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_extract/../common/data.h:19, - from src/mode_extract/extract_data.h:20, - from src/mode_extract/extract_read_data.cpp:16: + from src/mode_ase/../common/data.h:19, + from src/mode_ase/ase_data.h:20, + from src/mode_ase/ase_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1093,7 +1164,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, - from src/mode_correct/correct_processing.cpp:16: + from src/mode_correct/correct_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1107,9 +1178,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_ase/../common/data.h:19, - from src/mode_ase/ase_data.h:20, - from src/mode_ase/ase_read_sequences.cpp:16: + from src/mode_bamstat/../common/data.h:19, + from src/mode_bamstat/bamstat_data.h:20, + from src/mode_bamstat/bamstat_write_output.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1123,9 +1194,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_cis/../common/data.h:19, - from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_main.cpp:17: + from src/mode_fdensity/../common/data.h:19, + from src/mode_fdensity/fdensity_data.h:20, + from src/mode_fdensity/fdensity_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1139,16 +1210,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_fdensity/../common/data.h:19, - from src/mode_fdensity/fdensity_data.h:20, - from src/mode_fdensity/fdensity_read_qtl.cpp:16: -lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 76 | IntervalTree(void) - | ^ -In file included from lib/OTools/otools.h:56, - from src/mode_fdensity/../common/data.h:19, - from src/mode_fdensity/fdensity_data.h:20, - from src/mode_fdensity/fdensity_main.cpp:16: + from src/mode_cis/../common/data.h:19, + from src/mode_cis/cis_data.h:33, + from src/mode_cis/cis_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1161,19 +1225,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -lib/OTools/interval_tree.h:76:22: note: remove the '< >' -lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 82 | IntervalTree(const intervalTree& other) { - | ^ -lib/OTools/interval_tree.h:82:22: note: remove the '< >' -lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 118 | intervalVector& ivals, - | ^~~~~~~~~~~~~~ -lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_cis/../common/data.h:19, - from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_initilization.cpp:16: + from src/mode_ase/../common/data.h:19, + from src/mode_ase/ase_data.h:20, + from src/mode_ase/ase_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1187,9 +1242,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_bamstat/../common/data.h:19, - from src/mode_bamstat/bamstat_data.h:20, - from src/mode_bamstat/bamstat_main.cpp:16: + from src/mode_fenrich/../common/data.h:19, + from src/mode_fenrich/fenrich_data.h:20, + from src/mode_fenrich/fenrich_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1203,9 +1258,8 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_bamstat/../common/data.h:19, - from src/mode_bamstat/bamstat_data.h:20, - from src/mode_bamstat/bamstat_read_bam.cpp:16: + from src/common/data.h:19, + from src/common/data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1219,9 +1273,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_ase/../common/data.h:19, - from src/mode_ase/ase_data.h:20, - from src/mode_ase/ase_read_blacklist.cpp:16: + from src/mode_cis/../common/data.h:19, + from src/mode_cis/cis_data.h:33, + from src/mode_cis/cis_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1235,9 +1289,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_bamstat/../common/data.h:19, - from src/mode_bamstat/bamstat_data.h:20, - from src/mode_bamstat/bamstat_write_output.cpp:16: + from src/mode_cis/../common/data.h:19, + from src/mode_cis/cis_data.h:33, + from src/QTLtools.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1253,7 +1307,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_learn_beta.cpp:16: + from src/mode_cis/cis_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1267,9 +1321,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_cis/../common/data.h:19, - from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_collapse_phenotypes.cpp:16: + from src/mode_extract/../common/data.h:19, + from src/mode_extract/extract_data.h:20, + from src/mode_extract/extract_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1283,9 +1337,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_correct/../common/data.h:19, - from src/mode_correct/correct_data.h:24, - from src/mode_correct/correct_main.cpp:16: + from src/mode_cis/../common/data.h:19, + from src/mode_cis/cis_data.h:33, + from src/mode_cis/cis_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1299,9 +1353,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_ase/../common/data.h:19, - from src/mode_ase/ase_data.h:20, - from src/mode_ase/ase_read_fasta.cpp:16: + from src/mode_cis/../common/data.h:19, + from src/mode_cis/cis_data.h:33, + from src/mode_cis/cis_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1315,9 +1369,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_ase/../common/data.h:19, - from src/mode_ase/ase_data.h:20, - from src/mode_ase/ase_read_genotypes.cpp:16: + from src/mode_cis/../common/data.h:19, + from src/mode_cis/cis_data.h:33, + from src/mode_cis/cis_conditionnal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1331,9 +1385,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_correct/../common/data.h:19, - from src/mode_correct/correct_data.h:24, - from src/mode_correct/correct_management.cpp:16: + from src/mode_cis/../common/data.h:19, + from src/mode_cis/cis_data.h:33, + from src/mode_cis/cis_learn_dof.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1347,9 +1401,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_correct/../common/data.h:19, - from src/mode_correct/correct_data.h:24, - from src/mode_correct/correct_read_covariates.cpp:16: + from src/mode_bamstat/../common/data.h:19, + from src/mode_bamstat/bamstat_data.h:20, + from src/mode_bamstat/bamstat_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1363,9 +1417,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_fdensity/../common/data.h:19, - from src/mode_fdensity/fdensity_data.h:20, - from src/mode_fdensity/fdensity_process.cpp:17: + from src/mode_extract/../common/data.h:19, + from src/mode_extract/extract_data.h:20, + from src/mode_extract/extract_write.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1379,9 +1433,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_cis/../common/data.h:19, - from src/mode_cis/cis_data.h:33, - from src/mode_cis/cis_read_genotypes.cpp:16: + from src/mode_correct/../common/data.h:19, + from src/mode_correct/correct_data.h:24, + from src/mode_correct/correct_processing.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1395,9 +1449,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_cis/../common/data.h:19, - from src/mode_cis/cis_data.h:33, - from src/QTLtools.cpp:16: + from src/mode_fdensity/../common/data.h:19, + from src/mode_fdensity/fdensity_data.h:20, + from src/mode_fdensity/fdensity_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1410,7 +1464,6 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, @@ -1427,16 +1480,17 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_correct/correct_processing.cpp: In member function 'void correct_data::processVCF(std::string, std::string)': src/mode_correct/correct_processing.cpp:127:22: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 127 | bcf_hdr_write(fp, hdr_new); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ g++ -std=c++0x -o obj/fenrich_process.o -c src/mode_fenrich/fenrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, - from src/mode_fenrich/fenrich_management.cpp:16: + from src/mode_fenrich/fenrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1449,12 +1503,12 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, - from src/mode_fenrich/fenrich_process.cpp:16: + from src/mode_fenrich/fenrich_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1467,8 +1521,6 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_main.o -c src/mode_genrich/genrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/genrich_process.o -c src/mode_genrich/genrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, @@ -1487,10 +1539,13 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, - from src/mode_fenrich/fenrich_read_annotation.cpp:16: + from src/mode_fenrich/fenrich_read_tss.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1503,6 +1558,7 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, @@ -1522,23 +1578,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, - from src/mode_genrich/genrich_main.cpp:16: -lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 76 | IntervalTree(void) - | ^ -lib/OTools/interval_tree.h:76:22: note: remove the '< >' -lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 82 | IntervalTree(const intervalTree& other) { - | ^ -lib/OTools/interval_tree.h:82:22: note: remove the '< >' -lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 118 | intervalVector& ivals, - | ^~~~~~~~~~~~~~ -lib/OTools/interval_tree.h:118:13: note: remove the '< >' -In file included from lib/OTools/otools.h:56, - from src/mode_fenrich/../common/data.h:19, - from src/mode_fenrich/fenrich_data.h:20, - from src/mode_fenrich/fenrich_read_tss.cpp:16: + from src/mode_genrich/genrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1551,11 +1591,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, - from src/mode_genrich/genrich_process.cpp:16: + from src/mode_genrich/genrich_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1568,15 +1607,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/gwas_analysis_pass.o -c src/mode_gwas/gwas_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/gwas_initilization.o -c src/mode_gwas/gwas_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, - from src/mode_genrich/genrich_routines.cpp:16: + from src/mode_genrich/genrich_read_auxillliary_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1589,10 +1623,11 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/gwas_analysis_pass.o -c src/mode_gwas/gwas_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, - from src/mode_genrich/genrich_read_auxillliary_data.cpp:16: + from src/mode_genrich/genrich_read_reference_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1605,42 +1640,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/gwas_main.o -c src/mode_gwas/gwas_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/gwas_managment.o -c src/mode_gwas/gwas_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -In file included from /usr/include/eigen3/Eigen/Core:341, - from /usr/include/eigen3/Eigen/Dense:1, - from lib/OTools/residualizer.h:36, - from lib/OTools/otools.h:60: -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] - 327 | internal::triangular_matrix_vector_product - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 328 | - | ~~~~~~~~~ - 332 | ::run(actualLhs.rows(),actualLhs.cols(), - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 333 | actualLhs.data(),actualLhs.outerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 334 | actualRhsPtr,1, - | ~~~~~~~~~~~~~~~ - 335 | dest.data(),dest.innerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 336 | actualAlpha); - | ~~~~~~~~~~~~ -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here - 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -std=c++0x -o obj/gwas_read_covariates.o -c src/mode_gwas/gwas_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, - from src/mode_genrich/genrich_read_reference_genotypes.cpp:16: + from src/mode_genrich/genrich_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1656,7 +1659,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, - from src/mode_genrich/genrich_read_phenotypes.cpp:16: + from src/mode_genrich/genrich_routines.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1669,11 +1672,12 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/gwas_read_phenotypes.o -c src/mode_gwas/gwas_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/gwas_initilization.o -c src/mode_gwas/gwas_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/gwas_main.o -c src/mode_gwas/gwas_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, - from src/mode_gwas/gwas_managment.cpp:16: + from src/mode_gwas/gwas_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1686,11 +1690,18 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/gwas_managment.o -c src/mode_gwas/gwas_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/gwas_read_covariates.o -c src/mode_gwas/gwas_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/gwas_read_phenotypes.o -c src/mode_gwas/gwas_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/match_main.o -c src/mode_match/match_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/match_process.o -c src/mode_match/match_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, - from src/mode_gwas/gwas_analysis_pass.cpp:16: + from src/mode_gwas/gwas_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1706,7 +1717,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, - from src/mode_gwas/gwas_read_covariates.cpp:16: + from src/mode_gwas/gwas_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1719,11 +1730,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, - from src/mode_gwas/gwas_read_phenotypes.cpp:16: + from src/mode_gwas/gwas_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1768,7 +1778,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, - from src/mode_gwas/gwas_initilization.cpp:16: + from src/mode_gwas/gwas_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1797,27 +1807,6 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/match_process.o -c src/mode_match/match_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -In file included from lib/OTools/otools.h:56, - from src/mode_match/../common/data.h:19, - from src/mode_match/match_data.h:20, - from src/mode_match/match_main.cpp:16: -lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 76 | IntervalTree(void) - | ^ -lib/OTools/interval_tree.h:76:22: note: remove the '< >' -lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 82 | IntervalTree(const intervalTree& other) { - | ^ -lib/OTools/interval_tree.h:82:22: note: remove the '< >' -lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 118 | intervalVector& ivals, - | ^~~~~~~~~~~~~~ -lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, @@ -1834,12 +1823,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, - from src/mode_match/match_read_sequences.cpp:16: + from src/mode_match/match_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1852,7 +1839,9 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, @@ -1869,22 +1858,7 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -In file included from lib/OTools/otools.h:56, - from src/mode_pca/../common/data.h:19, - from src/mode_pca/pca_data.h:22, - from src/mode_pca/pca_main.cpp:16: -lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 76 | IntervalTree(void) - | ^ -lib/OTools/interval_tree.h:76:22: note: remove the '< >' -lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 82 | IntervalTree(const intervalTree& other) { - | ^ -lib/OTools/interval_tree.h:82:22: note: remove the '< >' -lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 118 | intervalVector& ivals, - | ^~~~~~~~~~~~~~ -lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, @@ -1902,9 +1876,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_pca/../common/data.h:19, - from src/mode_pca/pca_data.h:22, - from src/mode_pca/pca_management.cpp:16: + from src/mode_match/../common/data.h:19, + from src/mode_match/match_data.h:20, + from src/mode_match/match_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1917,13 +1891,42 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +In file included from /usr/include/eigen3/Eigen/Core:341, + from /usr/include/eigen3/Eigen/Dense:1, + from lib/OTools/residualizer.h:36, + from lib/OTools/otools.h:60: +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] + 327 | internal::triangular_matrix_vector_product + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 328 | + | ~~~~~~~~~ + 332 | ::run(actualLhs.rows(),actualLhs.cols(), + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 333 | actualLhs.data(),actualLhs.outerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 334 | actualRhsPtr,1, + | ~~~~~~~~~~~~~~~ + 335 | dest.data(),dest.innerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 336 | actualAlpha); + | ~~~~~~~~~~~~ +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here + 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -std=c++0x -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_readBAM.o -c src/mode_quan/quan_readBAM.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_readGTF.o -c src/mode_quan/quan_readGTF.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/quan_writeResults.o -c src/mode_quan/quan_writeResults.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, - from src/mode_quan/../common/data.h:19, - from src/mode_quan/quan_data.h:21, - from src/mode_quan/quan_main.cpp:16: + from src/mode_pca/../common/data.h:19, + from src/mode_pca/pca_data.h:22, + from src/mode_pca/pca_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1939,7 +1942,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, - from src/mode_pca/pca_read_data.cpp:16: + from src/mode_pca/pca_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1953,9 +1956,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_quan/../common/data.h:19, - from src/mode_quan/quan_data.h:21, - from src/mode_quan/quan_readBAM.cpp:16: + from src/mode_pca/../common/data.h:19, + from src/mode_pca/pca_data.h:22, + from src/mode_pca/pca_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -1968,7 +1971,44 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/quan_writeResults.o -c src/mode_quan/quan_writeResults.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/quan_xxhash.o -c src/mode_quan/quan_xxhash.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rep_initilization.o -c src/mode_rep/rep_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +In file included from /usr/include/eigen3/Eigen/Core:341, + from /usr/include/eigen3/Eigen/Dense:1, + from lib/OTools/residualizer.h:36, + from lib/OTools/otools.h:60: +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] + 327 | internal::triangular_matrix_vector_product + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 328 | + | ~~~~~~~~~ + 332 | ::run(actualLhs.rows(),actualLhs.cols(), + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 333 | actualLhs.data(),actualLhs.outerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 334 | actualRhsPtr,1, + | ~~~~~~~~~~~~~~~ + 335 | dest.data(),dest.innerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 336 | actualAlpha); + | ~~~~~~~~~~~~ +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here + 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -std=c++0x -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_pca.h:22, @@ -1988,7 +2028,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, - from src/mode_quan/quan_readGTF.cpp:16: + from src/mode_quan/quan_readBAM.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2004,7 +2044,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, - from src/mode_quan/quan_writeResults.cpp:16: + from src/mode_quan/quan_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2017,12 +2057,11 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/rep_initilization.o -c src/mode_rep/rep_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2044,13 +2083,13 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, - from src/mode_quan/quan_xxhash.cpp:109: + from src/mode_quan/quan_readGTF.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2063,12 +2102,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, - from src/mode_rep/../common/data.h:19, - from src/mode_rep/rep_data.h:31, - from src/mode_rep/rep_initilization.cpp:16: + from src/mode_quan/../common/data.h:19, + from src/mode_quan/quan_data.h:21, + from src/mode_quan/quan_writeResults.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2084,7 +2121,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, - from src/mode_rep/rep_main.cpp:16: + from src/mode_rep/rep_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2097,12 +2134,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, - from src/mode_rep/rep_nominal_pass.cpp:16: + from src/mode_rep/rep_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2116,9 +2151,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_rep/../common/data.h:19, - from src/mode_rep/rep_data.h:31, - from src/mode_rep/rep_management.cpp:16: + from src/mode_quan/../common/data.h:19, + from src/mode_quan/quan_data.h:21, + from src/mode_quan/quan_xxhash.cpp:109: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2134,7 +2169,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, - from src/mode_rep/rep_read_covariates.cpp:16: + from src/mode_rep/rep_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2147,43 +2182,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -In file included from /usr/include/eigen3/Eigen/Core:341, - from /usr/include/eigen3/Eigen/Dense:1, - from lib/OTools/residualizer.h:36, - from lib/OTools/otools.h:60: -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] - 327 | internal::triangular_matrix_vector_product - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 328 | - | ~~~~~~~~~ - 332 | ::run(actualLhs.rows(),actualLhs.cols(), - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 333 | actualLhs.data(),actualLhs.outerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 334 | actualRhsPtr,1, - | ~~~~~~~~~~~~~~~ - 335 | dest.data(),dest.innerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 336 | actualAlpha); - | ~~~~~~~~~~~~ -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here - 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -std=c++0x -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, - from src/mode_rep/rep_read_genotypes.cpp:16: + from src/mode_rep/rep_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2199,7 +2201,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, - from src/mode_rep/rep_read_phenotypes.cpp:16: + from src/mode_rep/rep_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2212,11 +2214,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, - from src/mode_rep/rep_read_qtls.cpp:16: + from src/mode_rep/rep_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2229,11 +2230,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, - from src/mode_rtc/../common/data.h:19, - from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_collapse_phenotypes.cpp:16: + from src/mode_rep/../common/data.h:19, + from src/mode_rep/rep_data.h:31, + from src/mode_rep/rep_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2246,11 +2246,11 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, - from src/mode_rtc/../common/data.h:19, - from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_common.cpp:16: + from src/mode_rep/../common/data.h:19, + from src/mode_rep/rep_data.h:31, + from src/mode_rep/rep_read_qtls.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2263,6 +2263,9 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, @@ -2279,11 +2282,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_gwas_cis.cpp:16: + from src/mode_rtc/rtc_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2296,15 +2298,16 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_gwas/gwas_analysis_pass.cpp: In member function 'void gwas_data::runGwasPassOnVCF(std::string, std::string)': src/mode_gwas/gwas_analysis_pass.cpp:28:28: warning: ignoring return value of 'int bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)' declared with attribute 'warn_unused_result' [-Wunused-result] 28 | bcf_hdr_set_samples(hdr, concat_id.c_str(), 0); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -std=c++0x -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_gwas_trans.cpp:16: + from src/mode_rtc/rtc_common.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2317,11 +2320,11 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_initilization.cpp:16: + from src/mode_rtc/rtc_gwas_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2334,10 +2337,11 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_main.cpp:16: + from src/mode_rtc/rtc_gwas_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2351,17 +2355,10 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' g++ -std=c++0x -o obj/rtc_management.o -c src/mode_rtc/rtc_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_read_get_hotspots.cpp:16: + from src/mode_rtc/rtc_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2374,10 +2371,12 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_mergeQTL_trans.cpp:16: + from src/mode_rtc/rtc_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2390,6 +2389,8 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, @@ -2409,7 +2410,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_read_covariates.cpp:16: + from src/mode_rtc/rtc_mergeQTL_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2425,7 +2426,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_read_genotypes.cpp:16: + from src/mode_rtc/rtc_mergeQTL_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2438,12 +2439,11 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_mergeQTL_cis.cpp:16: + from src/mode_rtc/rtc_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2456,11 +2456,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, - from src/mode_rtc/rtc_read_phenotypes.cpp:16: + from src/mode_rtc/rtc_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2473,12 +2472,12 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, - from src/mode_trans/../common/data.h:19, - from src/mode_trans/trans_data.h:26, - from src/mode_trans/trans_analysis_pass.cpp:16: + from src/mode_rtc/../common/data.h:19, + from src/mode_rtc/rtc_data.h:36, + from src/mode_rtc/rtc_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2491,6 +2490,8 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, @@ -2508,9 +2509,9 @@ | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, - from src/mode_trans/../common/data.h:19, - from src/mode_trans/trans_data.h:26, - from src/mode_trans/trans_chunking.cpp:16: + from src/mode_rtc/../common/data.h:19, + from src/mode_rtc/rtc_data.h:36, + from src/mode_rtc/rtc_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2523,7 +2524,8 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, @@ -2540,27 +2542,11 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -In file included from lib/OTools/otools.h:56, - from src/mode_trans/../common/data.h:19, - from src/mode_trans/trans_data.h:26, - from src/mode_trans/trans_initilization.cpp:16: -lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 76 | IntervalTree(void) - | ^ -lib/OTools/interval_tree.h:76:22: note: remove the '< >' -lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 82 | IntervalTree(const intervalTree& other) { - | ^ -lib/OTools/interval_tree.h:82:22: note: remove the '< >' -lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 118 | intervalVector& ivals, - | ^~~~~~~~~~~~~~ -lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, - from src/mode_trans/trans_learn_beta.cpp:16: + from src/mode_trans/trans_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2573,12 +2559,14 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_read_covariates.o -c src/mode_trans/trans_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/trans_read_phenotypes.o -c src/mode_trans/trans_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, - from src/mode_trans/trans_main.cpp:16: + from src/mode_trans/trans_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2595,7 +2583,7 @@ In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, - from src/mode_trans/trans_read_covariates.cpp:16: + from src/mode_trans/trans_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2608,10 +2596,11 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, - from src/mode_trans/trans_managment.cpp:16: + from src/mode_trans/trans_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2656,7 +2645,40 @@ In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, - from src/mode_trans/trans_read_samples.cpp:16: + from src/mode_trans/trans_main.cpp:16: +lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 76 | IntervalTree(void) + | ^ +lib/OTools/interval_tree.h:76:22: note: remove the '< >' +lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 82 | IntervalTree(const intervalTree& other) { + | ^ +lib/OTools/interval_tree.h:82:22: note: remove the '< >' +lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 118 | intervalVector& ivals, + | ^~~~~~~~~~~~~~ +lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/union_main.o -c src/mode_union/union_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +In file included from lib/OTools/otools.h:56, + from src/mode_trans/../common/data.h:19, + from src/mode_trans/trans_data.h:26, + from src/mode_trans/trans_managment.cpp:16: +lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 76 | IntervalTree(void) + | ^ +lib/OTools/interval_tree.h:76:22: note: remove the '< >' +lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 82 | IntervalTree(const intervalTree& other) { + | ^ +lib/OTools/interval_tree.h:82:22: note: remove the '< >' +lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 118 | intervalVector& ivals, + | ^~~~~~~~~~~~~~ +lib/OTools/interval_tree.h:118:13: note: remove the '< >' +In file included from lib/OTools/otools.h:56, + from src/mode_trans/../common/data.h:19, + from src/mode_trans/trans_data.h:26, + from src/mode_trans/trans_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2685,10 +2707,22 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/union_main.o -c src/mode_union/union_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/union_management.o -c src/mode_union/union_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +In file included from lib/OTools/otools.h:56, + from src/mode_trans/../common/data.h:19, + from src/mode_trans/trans_data.h:26, + from src/mode_trans/trans_read_samples.cpp:16: +lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 76 | IntervalTree(void) + | ^ +lib/OTools/interval_tree.h:76:22: note: remove the '< >' +lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 82 | IntervalTree(const intervalTree& other) { + | ^ +lib/OTools/interval_tree.h:82:22: note: remove the '< >' +lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 118 | intervalVector& ivals, + | ^~~~~~~~~~~~~~ +lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, @@ -2705,6 +2739,7 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/union_management.o -c src/mode_union/union_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, @@ -2721,6 +2756,9 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, @@ -2737,6 +2775,7 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' +g++ -std=c++0x -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, @@ -2753,13 +2792,11 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib -g++ -std=c++0x -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib +g++ -std=c++0x -o obj/union_union.o -c src/mode_union/union_union.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, - from src/mode_union/union_read_genotypes.cpp:16: + from src/mode_union/union_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2772,38 +2809,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -In file included from /usr/include/eigen3/Eigen/Core:341, - from /usr/include/eigen3/Eigen/Dense:1, - from src/mode_pca/pca_pca.h:21: -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] - 327 | internal::triangular_matrix_vector_product - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 328 | - | ~~~~~~~~~ - 332 | ::run(actualLhs.rows(),actualLhs.cols(), - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 333 | actualLhs.data(),actualLhs.outerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 334 | actualRhsPtr,1, - | ~~~~~~~~~~~~~~~ - 335 | dest.data(),dest.innerStride(), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 336 | actualAlpha); - | ~~~~~~~~~~~~ -/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here - 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, - from src/mode_union/union_read_phenotypes.cpp:16: + from src/mode_union/union_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2816,11 +2825,10 @@ 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the '< >' -g++ -std=c++0x -o obj/union_union.o -c src/mode_union/union_union.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, - from src/mode_union/union_read_get_hotspots.cpp:16: + from src/mode_union/union_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ @@ -2851,6 +2859,34 @@ lib/OTools/interval_tree.h:118:13: note: remove the '< >' In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, + from src/mode_pca/pca_pca.h:21: +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] + 327 | internal::triangular_matrix_vector_product + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 328 | + | ~~~~~~~~~ + 332 | ::run(actualLhs.rows(),actualLhs.cols(), + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 333 | actualLhs.data(),actualLhs.outerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 334 | actualRhsPtr,1, + | ~~~~~~~~~~~~~~~ + 335 | dest.data(),dest.innerStride(), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 336 | actualAlpha); + | ~~~~~~~~~~~~ +/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here + 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/eigen3/Eigen/Core:341, + from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': @@ -3030,14 +3066,14 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - make -j40 install DESTDIR=/build/reproducible-path/qtltools-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + make -j42 install DESTDIR=/build/reproducible-path/qtltools-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' mkdir -p -m 755 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install --strip-program=true bin/QTLtools /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified -install --strip-program=true -m 755 scripts/qtltools_runFDR_ftrans.R scripts/qtltools_plotTrans.R scripts/qtltools_runFDR_cis.R scripts/qtltools_runFDR_atrans.R /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin +install --strip-program=true -m 755 scripts/qtltools_runFDR_ftrans.R scripts/qtltools_runFDR_cis.R scripts/qtltools_runFDR_atrans.R scripts/qtltools_plotTrans.R /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified -install --strip-program=true -m 644 doc/QTLtools-mbv.1 doc/QTLtools-gwas.1 doc/QTLtools-rtc-union.1 doc/QTLtools-pca.1 doc/QTLtools-extract.1 doc/QTLtools-bamstat.1 doc/QTLtools-fenrich.1 doc/QTLtools-fdensity.1 doc/QTLtools.1 doc/QTLtools-quan.1 doc/QTLtools-ase.1 doc/QTLtools-rep.1 doc/QTLtools-trans.1 doc/QTLtools-correct.1 doc/QTLtools-rtc.1 doc/QTLtools-cis.1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 +install --strip-program=true -m 644 doc/QTLtools-ase.1 doc/QTLtools-rtc-union.1 doc/QTLtools-correct.1 doc/QTLtools-trans.1 doc/QTLtools.1 doc/QTLtools-gwas.1 doc/QTLtools-cis.1 doc/QTLtools-pca.1 doc/QTLtools-fenrich.1 doc/QTLtools-quan.1 doc/QTLtools-rtc.1 doc/QTLtools-rep.1 doc/QTLtools-extract.1 doc/QTLtools-fdensity.1 doc/QTLtools-bamstat.1 doc/QTLtools-mbv.1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 doc/QTLtools_bash_autocomplete.bash /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install: WARNING: ignoring --strip-program option as -s option was not specified @@ -3073,9 +3109,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'qtltools-example' in '../qtltools-example_1.3.1+dfsg-4_all.deb'. -dpkg-deb: building package 'qtltools' in '../qtltools_1.3.1+dfsg-4_amd64.deb'. dpkg-deb: building package 'qtltools-dbgsym' in '../qtltools-dbgsym_1.3.1+dfsg-4_amd64.deb'. +dpkg-deb: building package 'qtltools' in '../qtltools_1.3.1+dfsg-4_amd64.deb'. +dpkg-deb: building package 'qtltools-example' in '../qtltools-example_1.3.1+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../qtltools_1.3.1+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../qtltools_1.3.1+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3083,12 +3119,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2196584/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1702457 and its subdirectories -I: Current time: Sun Jul 27 23:16:13 -12 2025 -I: pbuilder-time-stamp: 1753701373 +I: removing directory /srv/workspace/pbuilder/2196584 and its subdirectories +I: Current time: Mon Aug 31 07:44:47 +14 2026 +I: pbuilder-time-stamp: 1788111887 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/qtltools_1.3.1+dfsg-4.diff: 93.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/qtltools_1.3.1+dfsg-4.diff.gz b2/build.log: 93.1% -- replaced with stdout Compressing the 1st log... b1/build.log: 93.4% -- replaced with stdout Mon Jul 28 11:21:50 UTC 2025 I: diffoscope 302 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_qtltools_trixie_amd64_1753701710 + touch /var/log/reproducible-builds/diffoscope_stamp_qtltools_trixie_amd64_1753701710 + RESULT=0 + systemd-run '--description=diffoscope on qtltools/1.3.1+dfsg-4 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_17-46698 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO --run-session -c jenkins-reproducible-trixie-diffoscope-856d543a-5d6d-4a8e-926b-400bb64167c0 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/dbd-tmp-k1zdqzd ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/qtltools_1.3.1+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/qtltools_1.3.1+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/qtltools_1.3.1+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b1/qtltools_1.3.1+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b2/qtltools_1.3.1+dfsg-4_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_17-46698.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/qtltools_1.3.1+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/qtltools_1.3.1+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/qtltools_1.3.1+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b1/qtltools_1.3.1+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.JctPIVbO/b2/qtltools_1.3.1+dfsg-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 160ms CPU time consumed: 161ms _ _ _ _ __ _| |_| | |_ ___ ___ | |___ / _` | __| | __/ _ \ / _ \| / __| | (_| | |_| | || (_) | (_) | \__ \ \__, |\__|_|\__\___/ \___/|_|___/ |_| Mon Jul 28 11:21:51 UTC 2025 I: diffoscope 302 found no differences in the changes files, and a .buildinfo file also exists. Mon Jul 28 11:21:51 UTC 2025 I: qtltools from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-07-28 11:21:51] INFO: Starting at 2025-07-28 11:21:51.985706 [2025-07-28 11:21:52] INFO: Generating the pages of 1 package(s) [2025-07-28 11:21:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/qtltools_1.3.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/qtltools_1.3.1+dfsg-4.diff.gz is missing [2025-07-28 11:21:52] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/qtltools didn't produce a buildlog, even though it has been built. [2025-07-28 11:21:52] INFO: Finished at 2025-07-28 11:21:52.279979, took: 0:00:00.294280 Mon Jul 28 11:21:52 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/qtltools.html Mon Jul 28 11:21:52 UTC 2025 I: Removing signed qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc files: removed './b1/qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc' removed './b2/qtltools_1.3.1+dfsg-4_amd64.buildinfo.asc' 1753701712 amd64 trixie qtltools Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/qtltools_1.3.1+dfsg-4.rbuild.log: 92.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/qtltools_1.3.1+dfsg-4.rbuild.log.gz [2025-07-28 11:21:52] INFO: Starting at 2025-07-28 11:21:52.551290 [2025-07-28 11:21:52] INFO: Generating the pages of 1 package(s) [2025-07-28 11:21:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/qtltools_1.3.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/qtltools_1.3.1+dfsg-4.diff.gz is missing [2025-07-28 11:21:52] INFO: Finished at 2025-07-28 11:21:52.826059, took: 0:00:00.274773 All cleanup done. Mon Jul 28 11:21:52 UTC 2025 - total duration: 0h 36m 16s. Mon Jul 28 11:21:52 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-XiIskaZR, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 36min 17.451s CPU time consumed: 10.550s