Running as unit: rb-build-amd64_19-73494.service; invocation ID: 3d74edebf6ba487988072c2219728e93 ==================================================================================== Sat Nov 1 01:17:21 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_19) on jenkins, called using "ionos1-amd64 ionos15-amd64" as arguments. Sat Nov 1 01:17:21 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-JUPCnDlP" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Nov 1 01:17:21 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sat Nov 1 01:17:21 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-GUa0ll' Sat Nov 1 01:17:22 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sat Nov 1 01:17:22 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-znEBnr' ok, let's check if biosquid is building anywhere yet… ok, biosquid is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of biosquid in forky on amd64 on jenkins now. 1st build will be done on ionos1-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Sat Nov 1 01:17:25 UTC 2025 I: starting to build biosquid/forky/amd64 on jenkins on '2025-11-01 01:17' Sat Nov 1 01:17:25 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_19/73494/console.log 1761959845 amd64 forky biosquid Sat Nov 1 01:17:25 UTC 2025 I: Downloading source for forky/biosquid=1.9g+cvs20050121-15.1 --2025-11-01 01:17:25-- http://deb.debian.org/debian/pool/main/b/biosquid/biosquid_1.9g%2bcvs20050121-15.1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2242 (2.2K) [text/prs.lines.tag] Saving to: ‘biosquid_1.9g+cvs20050121-15.1.dsc’ 0K .. 100% 250M=0s 2025-11-01 01:17:25 (250 MB/s) - ‘biosquid_1.9g+cvs20050121-15.1.dsc’ saved [2242/2242] --2025-11-01 01:17:25-- http://deb.debian.org/debian/pool/main/b/biosquid/biosquid_1.9g%2bcvs20050121-15.1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2242 (2.2K) [text/prs.lines.tag] Saving to: ‘biosquid_1.9g+cvs20050121-15.1.dsc’ 0K .. 100% 250M=0s 2025-11-01 01:17:25 (250 MB/s) - ‘biosquid_1.9g+cvs20050121-15.1.dsc’ saved [2242/2242] Sat Nov 1 01:17:25 UTC 2025 I: biosquid_1.9g+cvs20050121-15.1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biosquid Binary: biosquid, libsquid1t64, libsquid-dev Architecture: any Version: 1.9g+cvs20050121-15.1 Maintainer: Debian-Med Packaging Team Uploaders: Andreas Tille Homepage: http://eddylab.org/software.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/biosquid Vcs-Git: https://salsa.debian.org/med-team/biosquid.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106) Package-List: biosquid deb science optional arch=any libsquid-dev deb libdevel optional arch=any libsquid1t64 deb libs optional arch=any Checksums-Sha1: 5ff847263f38a26e8cf4e2fba0414c5fdb8c6732 304060 biosquid_1.9g+cvs20050121.orig.tar.gz 2dd4764998668cfbb45cf3227d58f060ab223b1a 14804 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz Checksums-Sha256: b6b752bcea5ec6468b52096cdde0e792b7f5ed5fb3f477ec7ac233c54646f925 304060 biosquid_1.9g+cvs20050121.orig.tar.gz defda3f89eaba1d601f4ce38021e451af12e8e594ffb5019a8d81177091d78ef 14804 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz Files: 75ca6e693bedb18086b9e5911f3c047a 304060 biosquid_1.9g+cvs20050121.orig.tar.gz bc18268d36cc8d35b9a73e8eec0b9343 14804 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEErEg/aN5yj0PyIC/KVo0w8yGyEz0FAmXfe8ASHHZvcmxvbkBk ZWJpYW4ub3JnAAoJEFaNMPMhshM9wTAQAL7awE2qHYNWvV5BE9cTq2QJy1TU/HOC C+3kmBu8USPsUPzOoFECFLYwlYsXUD1THDEz0oYdxt2x+txYCp9TLG4f70FAoduj 0MhseST+8AwJuG9L+2vdWjJxGlyyylPL8cIAW5itkoNkbErRGdwQvjzkxgJbyReT i6TbXdrpdCiVzEopt+xt7fKaFlOo/QTWlB0jPxXqURX0hkDZXMFrw+TwEyQtlCsF 1a8vW5fS2ClTwbtemfV0bw7Aw0VqZKQia2PDTxNDByiJvt7EB92yziqv6JMH8HJl mTL5X9i+LAdZ77WXav3pC+PYEerK3YnsWxZkJt23pwVuON8IDaLWp9EqGj49Ew6E VMnhThHlXGAHTMv/B1qe+1VZ4oXO9KQw1EXOd1fMtVymcdSc7JSKbJPdfp72bWgz R6ZMF0crHBS6ptHBV/2AfFmskUlaVXlSwhjDBZJXCnUVPKR1TBrjZQ/Myrdj+pyq Byn7+haHS0eqgJR5NIMSzu4fE9BqNob2qryRty4tiOTMSGmnjtqdZOfmU3mxGGYt kCbZQ94mwfJ3bwH0X79Vt3/yBV53+tdl434knXmdYIFwzuMwFI7PBXF7hx35vAM1 xNFWuYI/GIoKonHSYjEwS+ojvSivrbENFH8XMLB3Nhu3NsnyNEUnHkinPmSz4q/S +yVMkxpXRN9f =JOLw -----END PGP SIGNATURE----- Sat Nov 1 01:17:25 UTC 2025 I: Checking whether the package is not for us Sat Nov 1 01:17:25 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sat Nov 1 01:17:25 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sat Nov 1 01:17:25 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sat Nov 1 01:17:25 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-s2hTYp' ==================================================================================== Sat Nov 1 01:17:26 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "1 biosquid forky /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o 1.9g+cvs20050121-15.1" as arguments. Sat Nov 1 01:17:26 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-ifBNXYLs" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Nov 1 01:17:26 UTC 2025 I: Downloading source for forky/biosquid=1.9g+cvs20050121-15.1 Reading package lists... NOTICE: 'biosquid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biosquid.git Please use: git clone https://salsa.debian.org/med-team/biosquid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 321 kB of source archives. Get:1 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (dsc) [2242 B] Get:2 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (tar) [304 kB] Get:3 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (diff) [14.8 kB] Fetched 321 kB in 0s (9918 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biosquid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biosquid.git Please use: git clone https://salsa.debian.org/med-team/biosquid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 321 kB of source archives. Get:1 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (dsc) [2242 B] Get:2 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (tar) [304 kB] Get:3 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (diff) [14.8 kB] Fetched 321 kB in 0s (9918 kB/s) Download complete and in download only mode ============================================================================= Building biosquid in forky on amd64 on ionos1-amd64 now. Date: Sat Nov 1 01:17:26 UTC 2025 Date UTC: Sat Nov 1 01:17:26 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 13:17:27 -12 2025 I: pbuilder-time-stamp: 1761959847 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biosquid_1.9g+cvs20050121-15.1.dsc] I: copying [./biosquid_1.9g+cvs20050121.orig.tar.gz] I: copying [./biosquid_1.9g+cvs20050121-15.1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biosquid_1.9g+cvs20050121-15.1.dsc: no acceptable signature found dpkg-source: info: extracting biosquid in biosquid-1.9g+cvs20050121 dpkg-source: info: unpacking biosquid_1.9g+cvs20050121.orig.tar.gz dpkg-source: info: unpacking biosquid_1.9g+cvs20050121-15.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying afetch.man.patch dpkg-source: info: applying alistat.man.patch dpkg-source: info: applying compstruct.man.patch dpkg-source: info: applying Makefile.in.patch dpkg-source: info: applying seqstat.man.patch dpkg-source: info: applying sfetch.man.patch dpkg-source: info: applying shuffle.man.patch dpkg-source: info: applying sindex.man.patch dpkg-source: info: applying sreformat.man.patch dpkg-source: info: applying getopt-segmentation-fault.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying perl-testsuite-inc.patch dpkg-source: info: applying automake.patch dpkg-source: info: applying pkg-config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/617771/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='903d920c849d4f879be854ab79bf5d19' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='617771' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/pbuilderrc_l0xk --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b1 --logfile b1/build.log biosquid_1.9g+cvs20050121-15.1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/617771/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106); however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 42.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 23 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Fetched 11.3 MB in 3s (4268 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../25-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. 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Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-15.1_source.changes dpkg-buildpackage: info: source package biosquid dpkg-buildpackage: info: source version 1.9g+cvs20050121-15.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steve Langasek dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars debian/files rm -fr -- debian/biosquid/ debian/tmp/ debian/libsquid1t64/ debian/libsquid-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config cp -a --update=none --reflink=auto config.sub debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:47: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level configure.ac:75: installing './compile' configure.ac:77: installing './config.guess' configure.ac:40: installing './missing' Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' # autoreconf && true autoconf configure.ac:47: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level dh_auto_configure -- --enable-lfs # --enable-pvm ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-lfs checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar configure: configuring the SQUID library for your system. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/x86_64-linux-gnu-ld checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ar... /usr/bin/ar checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 8 checking size of unsigned long long... 8 checking for strtoul... yes checking for strtoull... yes checking whether fpos_t is an arithmetic datatype... no. checking for strtoull... (cached) yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for stat64... yes checking for struct stat64... no! checking size of off_t... 8 checking size of off64_t... 0 checking size of fpos_t... 16 configure: configured for optional LFS, large file support checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Testsuite/Makefile config.status: creating squid.h config.status: creating libsquid.pc config.status: creating squidconf.h config.status: executing depfiles commands config.status: executing libtool commands # avoid duplicated definition of PACKAGE_NAME (basically conflicting with hmmer2 when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ squidconf.h make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_auto_build make -j40 make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o afetch_main.o afetch_main.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-gki.lo `test -f 'gki.c' || echo './'`gki.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-hsregex.lo `test -f 'hsregex.c' || echo './'`hsregex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-msa.lo `test -f 'msa.c' || echo './'`msa.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-msf.lo `test -f 'msf.c' || echo './'`msf.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-selex.lo `test -f 'selex.c' || echo './'`selex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sqerror.lo `test -f 'sqerror.c' || echo './'`sqerror.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sqio.lo `test -f 'sqio.c' || echo './'`sqio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-squidcore.lo `test -f 'squidcore.c' || echo './'`squidcore.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_ctype.lo `test -f 'sre_ctype.c' || echo './'`sre_ctype.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o alistat_main.o alistat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o aligneval.o aligneval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -fPIC -DPIC -o .libs/libsquid_la-sqio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -fPIC -DPIC -o .libs/libsquid_la-sqerror.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -fPIC -DPIC -o .libs/libsquid_la-msf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -fPIC -DPIC -o .libs/libsquid_la-msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -fPIC -DPIC -o .libs/libsquid_la-aligneval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -fPIC -DPIC -o .libs/libsquid_la-phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -fPIC -DPIC -o .libs/libsquid_la-squidcore.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -fPIC -DPIC -o .libs/libsquid_la-sre_ctype.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -fPIC -DPIC -o .libs/libsquid_la-sre_random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -fPIC -DPIC -o .libs/libsquid_la-selex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -fPIC -DPIC -o .libs/libsquid_la-sre_string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -fPIC -DPIC -o .libs/libsquid_la-cluster.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -fPIC -DPIC -o .libs/libsquid_la-revcomp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -fPIC -DPIC -o .libs/libsquid_la-iupac.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o cluster.o cluster.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -o libsquid_la-squidcore.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -o libsquid_la-sqerror.o >/dev/null 2>&1 hsregex.c: In function 'sqd_regcomp': hsregex.c:328:1: warning: old-style function definition [-Wold-style-definition] 328 | sqd_regcomp(exp) | ^~~~~~~~~~~ hsregex.c: In function 'reg': hsregex.c:417:1: warning: old-style function definition [-Wold-style-definition] 417 | reg(cp, paren, flagp) | ^~~ hsregex.c: In function 'regbranch': hsregex.c:487:1: warning: old-style function definition [-Wold-style-definition] 487 | regbranch(cp, flagp) | ^~~~~~~~~ hsregex.c: In function 'regpiece': hsregex.c:528:1: warning: old-style function definition [-Wold-style-definition] 528 | regpiece(cp, flagp) | ^~~~~~~~ hsregex.c: In function 'regatom': hsregex.c:597:1: warning: old-style function definition [-Wold-style-definition] 597 | regatom(cp, flagp) | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 hsregex.c: In function 'regnode': hsregex.c:708:1: warning: old-style function definition [-Wold-style-definition] 708 | regnode(cp, op) | ^~~~~~~ hsregex.c: In function 'regc': hsregex.c:733:1: warning: old-style function definition [-Wold-style-definition] 733 | regc(cp, b) | ^~~~ hsregex.c: In function 'reginsert': hsregex.c:749:1: warning: old-style function definition [-Wold-style-definition] 749 | reginsert(cp, op, opnd) | ^~~~~~~~~ hsregex.c: In function 'regtail': hsregex.c:774:1: warning: old-style function definition [-Wold-style-definition] 774 | regtail(cp, p, val) | ^~~~~~~ hsregex.c: In function 'regoptail': hsregex.c:799:1: warning: old-style function definition [-Wold-style-definition] 799 | regoptail(cp, p, val) | ^~~~~~~~~ hsregex.c: In function 'sqd_regexec': hsregex.c:841:1: warning: old-style function definition [-Wold-style-definition] 841 | sqd_regexec(prog, str) | ^~~~~~~~~~~ hsregex.c: In function 'regtry': hsregex.c:895:1: warning: old-style function definition [-Wold-style-definition] 895 | regtry(ep, prog, string) | ^~~~~~ hsregex.c: In function 'regmatch': hsregex.c:931:1: warning: old-style function definition [-Wold-style-definition] 931 | regmatch(ep, prog) | ^~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 hsregex.c: In function 'regrepeat': hsregex.c:1090:1: warning: old-style function definition [-Wold-style-definition] 1090 | regrepeat(ep, node) | ^~~~~~~~~ hsregex.c: In function 'regnext': hsregex.c:1129:1: warning: old-style function definition [-Wold-style-definition] 1129 | regnext(p) | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -o libsquid_la-sre_ctype.o >/dev/null 2>&1 hsregex.c: In function 'sqd_regsub': hsregex.c:1275:1: warning: old-style function definition [-Wold-style-definition] 1275 | sqd_regsub(rp, source, dest) | ^~~~~~~~~~ hsregex.c: In function 'sqd_regerror': hsregex.c:1324:1: warning: old-style function definition [-Wold-style-definition] 1324 | sqd_regerror(s) | ^~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -o libsquid_la-rk.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -o libsquid_la-file.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -o libsquid_la-eps.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -o libsquid_la-clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -o libsquid_la-types.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -o libsquid_la-sre_random.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_math.o sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -o libsquid_la-gki.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_stack.o sre_stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1 dirichlet.c: In function 'AllocDirichlet': dirichlet.c:375:3: warning: '__builtin_strcpy' writing one too many bytes into a region of a size that depends on 'strlen' [-Wstringop-overflow=] 375 | strcpy(d->alphabet, alphabet); | ^ dirichlet.c:374:17: note: destination object of size [0, 2147483647] allocated by 'malloc' 374 | d->alphabet = malloc(sizeof(char) * d->K); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compalign_main.o compalign_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -o libsquid_la-sre_string.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compstruct_main.o compstruct_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o wuss.o wuss.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -o libsquid_la-phylip.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp_main.o revcomp_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp.o revcomp.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle.o shuffle.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqsplit_main.o seqsplit_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqstat_main.o seqstat_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -o libsquid_la-msf.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sfetch_main.o sfetch_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle_main.o shuffle_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o iupac.o iupac.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sindex_main.o sindex_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sreformat_main.o sreformat_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o eps.o eps.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate_main.o translate_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate.o translate.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight_main.o weight_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight.o weight.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -o libsquid_la-stockholm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -o libsquid_la-alignio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -o libsquid_la-hsregex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -o libsquid_la-selex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -o libsquid_la-ssi.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -o libsquid_la-msa.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -o libsquid_la-sqio.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/x86_64-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1") libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so") libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o libsquid_la-weight.o libsquid_la-wuss.o libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch* ln -s .libs/libsquid.a dh_auto_test make -j40 check TESTSUITEFLAGS="-j40 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' (cd Testsuite; make CC="gcc" CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection") make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c sqdconfig_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c iospeed_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c rndspeed_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o sqdconfig sqdconfig_main.o -lsquid -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o rndspeed rndspeed_main.o -lsquid -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o iospeed iospeed_main.o -lsquid -lm /usr/bin/ld: iospeed_main.o: in function `main': ./Testsuite/./Testsuite/iospeed_main.c:28:(.text.startup+0x33): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' (cd Testsuite; make check) make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' fgets(): 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00 sre_fgets(): 0.07u 0.01s 00:00:00.08 Elapsed: 00:00:00 ReadSeq(): 0.16u 0.03s 00:00:00.19 Elapsed: 00:00:00 iospeed: ok rand(): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00 sre_random(): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00 rndspeed: ok x-base-afetch basic tests of afetch ... ok. x-base-alistat basic tests of alistat ... ok. x-base-seqstat basic tests of seqstat ... ok. x-base-sfetch basic tests of sfetch ... ok. x-base-shuffle basic tests of shuffle ... ok. x-base-sindex basic tests of sindex ... ok. x-base-sreformat basic tests of sreformat ... ok. bug-1-sfetch-path sfetch/SSI path bug ... ok. make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -fr -- /tmp/dh-xdg-rundir-7JRtJm5E cd Testsuite && make clean make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' rm -f *.o *~ Makefile.bak core iospeed rndspeed TAGS gmon.out sqdconfig make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars rm -fr -- debian/.debhelper/generated/biosquid/ debian/biosquid/ debian/tmp/ debian/.debhelper/generated/libsquid1t64/ debian/libsquid1t64/ debian/.debhelper/generated/libsquid-dev/ debian/libsquid-dev/ dh_auto_install install -m0755 -d /build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsquid.so.1.0.0 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so.1 || { rm -f libsquid.so.1 && ln -s libsquid.so.1.0.0 libsquid.so.1; }; }) libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so || { rm -f libsquid.so && ln -s libsquid.so.1.0.0 libsquid.so; }; }) libtool: install: /usr/bin/install -c .libs/libsquid.lai /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.la libtool: install: /usr/bin/install -c .libs/libsquid.a /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: chmod 644 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: ranlib /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/afetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/afetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/alistat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/alistat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compalign /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compalign libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compstruct /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compstruct libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/revcomp /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/revcomp libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqsplit /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqsplit libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqstat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqstat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sfetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sfetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/shuffle /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/shuffle libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sindex /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sindex libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sreformat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sreformat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/weight /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/weight /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/install -c -m 644 dirichlet.h rk.h sqfuncs.h gki.h msa.h sre_random.h sre_stack.h ssi.h stopwatch.h vectorops.h '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libsquid.pc '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/stranslate dh_install install -m0755 -d debian/biosquid/usr cp --reflink=auto -a debian/tmp/usr/bin debian/biosquid/usr/ d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev squid.h usr/include/biosquid \ --movedev squidconf.h usr/include/biosquid \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libsquid.so Library package automatic movement utility set -e install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libsquid1t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1 debian/libsquid1t64/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/x86_64-linux-gnu PKGDEV=libsquid-dev PKGSHL=libsquid1t64 install -d -m 755 debian/libsquid-dev/usr/include mv debian/tmp/usr/include/biosquid debian/libsquid-dev/usr/include install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squid.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squidconf.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name "lib*.la" -delete # resolve @LICENSE@ by text in header files for HEADER in /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/include/biosquid/*.h ; do \ if grep -q '@LICENSE@' ${HEADER} ; then \ sed '/@LICENSE@/,$d' ${HEADER} > ${HEADER}_tmp ; \ sed 's/^/ * /' Licenses/gnu >> ${HEADER}_tmp ; \ sed '0,/@LICENSE@/d' ${HEADER} >> ${HEADER}_tmp ; \ mv ${HEADER}_tmp ${HEADER} ; \ fi ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installdocs install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/biosquid.README.Debian debian/biosquid/usr/share/doc/biosquid/README.Debian install -p -m0644 debian/copyright debian/biosquid/usr/share/doc/biosquid/copyright install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/copyright debian/libsquid1t64/usr/share/doc/libsquid1t64/copyright install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/README.test debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/tests/run-unit-test debian/libsquid-dev/usr/share/doc/libsquid-dev chmod -R u\+rw,go=rX debian/libsquid-dev/usr/share/doc install -p -m0644 debian/libsquid-dev.README.Debian debian/libsquid-dev/usr/share/doc/libsquid-dev/README.Debian install -p -m0644 debian/copyright debian/libsquid-dev/usr/share/doc/libsquid-dev/copyright dh_installchangelogs install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -p -m0644 debian/.debhelper/generated/libsquid-dev/dh_installchangelogs.dch.trimmed debian/libsquid-dev/usr/share/doc/libsquid-dev/changelog.Debian install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/.debhelper/generated/libsquid1t64/dh_installchangelogs.dch.trimmed debian/libsquid1t64/usr/share/doc/libsquid1t64/changelog.Debian install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/.debhelper/generated/biosquid/dh_installchangelogs.dch.trimmed debian/biosquid/usr/share/doc/biosquid/changelog.Debian rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installexamples install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Testsuite debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Formats debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean /bin/sh: 1: cd: can't cd to /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight test -z "" || rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight rm -f libsquid.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/share/doc/libsquid-dev/examples/Formats/*.pl make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installman install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/compalign.1 debian/biosquid/usr/share/man/man1/compalign.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/revcomp.1 debian/biosquid/usr/share/man/man1/revcomp.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/seqsplit.1 debian/biosquid/usr/share/man/man1/seqsplit.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/stranslate.1 debian/biosquid/usr/share/man/man1/stranslate.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/weight.1 debian/biosquid/usr/share/man/man1/weight.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/compalign.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/revcomp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/stranslate.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/revcomp.1 mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 mv debian/biosquid/usr/share/man/man1/compalign.1.dh-new debian/biosquid/usr/share/man/man1/compalign.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/compalign.1 mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/seqsplit.1.dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/seqsplit.1 for manpage in Man/*.man; do \ cp -a ${manpage} /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid/usr/share/man/man1/`basename ${manpage} .man`.1 ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_lintian install -m0755 -d debian/libsquid1t64/usr/share/lintian/overrides install -p -m0644 debian/libsquid1t64.lintian-overrides debian/libsquid1t64/usr/share/lintian/overrides/libsquid1t64 dh_perl dh_link rm -f debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1 ln -s libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1 rm -f debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so ln -s libsquid.so.1.0.0 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so dh_strip_nondeterminism dh_compress cd debian/biosquid cd debian/libsquid1t64 cd debian/libsquid-dev chmod a-x usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/libsquid-dev/changelog.Debian gzip -9nf usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid-dev/changelog.Debian gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_fixperms find debian/biosquid ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/doc -type f -a -true -a ! -regex 'debian/biosquid/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid1t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libsquid1t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libsquid-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -- debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/weight objcopy --compress-debug-sections debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug chmod 0644 -- debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.a install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74 objcopy --only-keep-debug --compress-debug-sections debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug debian/biosquid/usr/bin/shuffle install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight objcopy --add-gnu-debuglink debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug debian/biosquid/usr/bin/weight install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc ln -s libsquid1t64 debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc/libsquid1t64-dbgsym install -m0755 -d debian/.debhelper/libsquid1t64 install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug debian/biosquid/usr/bin/seqsplit install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug debian/biosquid/usr/bin/sindex install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug debian/biosquid/usr/bin/alistat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug debian/biosquid/usr/bin/sreformat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug debian/biosquid/usr/bin/afetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug debian/biosquid/usr/bin/sfetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug debian/biosquid/usr/bin/compalign install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug debian/biosquid/usr/bin/revcomp install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compstruct debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compstruct objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug debian/biosquid/usr/bin/compstruct install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug debian/biosquid/usr/bin/stranslate install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug debian/biosquid/usr/bin/seqstat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/biosquid/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/biosquid/usr/lib/debug install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/share/doc ln -s biosquid debian/.debhelper/biosquid/dbgsym-root/usr/share/doc/biosquid-dbgsym install -m0755 -d debian/.debhelper/biosquid dh_makeshlibs -a rm -f debian/biosquid/DEBIAN/shlibs rm -f debian/libsquid1t64/DEBIAN/shlibs install -m0755 -d debian/libsquid1t64/DEBIAN echo "libsquid 1 libsquid1t64 (>= 1.9g+cvs20050121)" >> debian/libsquid1t64/DEBIAN/shlibs chmod 0644 -- debian/libsquid1t64/DEBIAN/shlibs mv debian/.debhelper/generated/libsquid1t64/triggers.new debian/.debhelper/generated/libsquid1t64/triggers mv debian/libsquid1t64.substvars.new debian/libsquid1t64.substvars rm -f debian/libsquid-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libsquid1t64/DEBIAN dpkg-shlibdeps -Tdebian/libsquid1t64.substvars debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/DEBIAN dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/seqstat dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sqrt used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol floor used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol tan used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dh_installdeb install -m0755 -d debian/biosquid/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libsquid1t64/triggers debian/libsquid1t64/DEBIAN/triggers install -m0755 -d debian/libsquid-dev/DEBIAN dh_gencontrol install -m0755 -d debian/biosquid/DEBIAN echo misc:Depends= >> debian/biosquid.substvars echo misc:Pre-Depends= >> debian/biosquid.substvars install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/.debhelper/biosquid/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=biosquid-dbgsym -DDepends="biosquid (= \${binary:Version})" -DDescription="debug symbols for biosquid" -DBuild-Ids="1c514dd07f670e4e5cd3a0659b6894a411b3a0c1 40f5850ea6f56c3246a2907c446ca018c037873f 6adc41c122360f44848814587da506c4ca08d0c0 6d17a6c78b35d682190283785089f5902b3ac674 8b7728d02342cab88f1f1a84f4ea14d6f0c9e1ff 975aa91651a1a692793a24655e7fcae143558d37 9a738b97750351a0631e6d9d88b87d22765b65a7 ae0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd bc5f0a98c4af4fbc507bbe1911a0a035423badef cd35a3b45190ce6d8febbae38239b85da1a801d2 dc07d98d395ccd7319caefec77eb137bfa2fa2e4 dd30005d71d0da742a841c5d0af595c3a771f45d f5e120cc3178fc74085975a7145a6d67479321ab" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libsquid-dev/DEBIAN echo misc:Depends= >> debian/libsquid-dev.substvars echo misc:Pre-Depends= >> debian/libsquid-dev.substvars dpkg-gencontrol -plibsquid-dev -ldebian/changelog -Tdebian/libsquid-dev.substvars -cdebian/control -Pdebian/libsquid-dev install -m0755 -d debian/libsquid1t64/DEBIAN echo misc:Depends= >> debian/libsquid1t64.substvars echo misc:Pre-Depends= >> debian/libsquid1t64.substvars install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/.debhelper/libsquid1t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libsquid1t64-dbgsym -DDepends="libsquid1t64 (= \${binary:Version})" -DDescription="debug symbols for libsquid1t64" -DBuild-Ids=745d2253ea6d90f61335adc261e10d1018d01031 -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/libsquid1t64 dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libsquid-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/biosquid chmod 0644 -- debian/libsquid1t64/DEBIAN/control chmod 0644 -- debian/biosquid/DEBIAN/control dh_md5sums install -m0755 -d debian/libsquid-dev/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN install -m0755 -d debian/biosquid/DEBIAN cd debian/libsquid1t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/biosquid >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libsquid1t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN chmod 0644 -- debian/biosquid/DEBIAN/md5sums install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN chmod 0644 -- debian/libsquid-dev/DEBIAN/md5sums cd debian/.debhelper/libsquid1t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/biosquid/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/biosquid .. dpkg-deb --root-owner-group --build debian/.debhelper/biosquid/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid1t64 .. dpkg-deb --root-owner-group --build debian/.debhelper/libsquid1t64/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb: building package 'biosquid' in '../biosquid_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'biosquid-dbgsym' in '../biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid1t64' in '../libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid1t64-dbgsym' in '../libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo dpkg-genchanges --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/617771 and its subdirectories I: Current time: Fri Oct 31 13:18:53 -12 2025 I: pbuilder-time-stamp: 1761959933 Sat Nov 1 01:18:53 UTC 2025 I: Signing ./b1/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo as biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc Sat Nov 1 01:18:53 UTC 2025 I: Signed ./b1/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo as ./b1/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc Sat Nov 1 01:18:53 UTC 2025 - build #1 for biosquid/forky/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Sat Nov 1 01:18:53 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ifBNXYLs, removing. /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 01:18 b1 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 01:17 b2 -rw-rw-r-- 1 jenkins jenkins 2242 Feb 28 2024 biosquid_1.9g+cvs20050121-15.1.dsc -rw------- 1 jenkins jenkins 3415 Nov 1 01:17 rbuildlog.lbqKeN5 /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b1: total 836 -rw-r--r-- 1 jenkins jenkins 183216 Nov 1 01:18 biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 14804 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2242 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1.dsc -rw-r--r-- 1 jenkins jenkins 6233 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7115 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2716 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_amd64.changes -rw-r--r-- 1 jenkins jenkins 79828 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1422 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_source.changes -rw-r--r-- 1 jenkins jenkins 134622 Nov 1 01:18 build.log -rw-r--r-- 1 jenkins jenkins 144576 Nov 1 01:18 libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 182964 Nov 1 01:18 libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 76996 Nov 1 01:18 libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b2: total 0 Sat Nov 1 01:18:53 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 13:17:27 -12 2025 I: pbuilder-time-stamp: 1761959847 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biosquid_1.9g+cvs20050121-15.1.dsc] I: copying [./biosquid_1.9g+cvs20050121.orig.tar.gz] I: copying [./biosquid_1.9g+cvs20050121-15.1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biosquid_1.9g+cvs20050121-15.1.dsc: no acceptable signature found dpkg-source: info: extracting biosquid in biosquid-1.9g+cvs20050121 dpkg-source: info: unpacking biosquid_1.9g+cvs20050121.orig.tar.gz dpkg-source: info: unpacking biosquid_1.9g+cvs20050121-15.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying afetch.man.patch dpkg-source: info: applying alistat.man.patch dpkg-source: info: applying compstruct.man.patch dpkg-source: info: applying Makefile.in.patch dpkg-source: info: applying seqstat.man.patch dpkg-source: info: applying sfetch.man.patch dpkg-source: info: applying shuffle.man.patch dpkg-source: info: applying sindex.man.patch dpkg-source: info: applying sreformat.man.patch dpkg-source: info: applying getopt-segmentation-fault.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying perl-testsuite-inc.patch dpkg-source: info: applying automake.patch dpkg-source: info: applying pkg-config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/617771/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='903d920c849d4f879be854ab79bf5d19' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='617771' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/pbuilderrc_l0xk --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b1 --logfile b1/build.log biosquid_1.9g+cvs20050121-15.1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/617771/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106); however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 42.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 23 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Fetched 11.3 MB in 3s (4268 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../25-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-15.1_source.changes dpkg-buildpackage: info: source package biosquid dpkg-buildpackage: info: source version 1.9g+cvs20050121-15.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steve Langasek dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars debian/files rm -fr -- debian/biosquid/ debian/tmp/ debian/libsquid1t64/ debian/libsquid-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config cp -a --update=none --reflink=auto config.sub debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:47: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level configure.ac:75: installing './compile' configure.ac:77: installing './config.guess' configure.ac:40: installing './missing' Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' # autoreconf && true autoconf configure.ac:47: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level dh_auto_configure -- --enable-lfs # --enable-pvm ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-lfs checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar configure: configuring the SQUID library for your system. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/x86_64-linux-gnu-ld checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ar... /usr/bin/ar checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 8 checking size of unsigned long long... 8 checking for strtoul... yes checking for strtoull... yes checking whether fpos_t is an arithmetic datatype... no. checking for strtoull... (cached) yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for stat64... yes checking for struct stat64... no! checking size of off_t... 8 checking size of off64_t... 0 checking size of fpos_t... 16 configure: configured for optional LFS, large file support checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Testsuite/Makefile config.status: creating squid.h config.status: creating libsquid.pc config.status: creating squidconf.h config.status: executing depfiles commands config.status: executing libtool commands # avoid duplicated definition of PACKAGE_NAME (basically conflicting with hmmer2 when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ squidconf.h make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_auto_build make -j40 make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o afetch_main.o afetch_main.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-gki.lo `test -f 'gki.c' || echo './'`gki.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-hsregex.lo `test -f 'hsregex.c' || echo './'`hsregex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-msa.lo `test -f 'msa.c' || echo './'`msa.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-msf.lo `test -f 'msf.c' || echo './'`msf.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-selex.lo `test -f 'selex.c' || echo './'`selex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sqerror.lo `test -f 'sqerror.c' || echo './'`sqerror.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sqio.lo `test -f 'sqio.c' || echo './'`sqio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-squidcore.lo `test -f 'squidcore.c' || echo './'`squidcore.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_ctype.lo `test -f 'sre_ctype.c' || echo './'`sre_ctype.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_random.lo `test -f 'sre_random.c' || echo './'`sre_random.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_string.lo `test -f 'sre_string.c' || echo './'`sre_string.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-ssi.lo `test -f 'ssi.c' || echo './'`ssi.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-stockholm.lo `test -f 'stockholm.c' || echo './'`stockholm.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-types.lo `test -f 'types.c' || echo './'`types.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-vectorops.lo `test -f 'vectorops.c' || echo './'`vectorops.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-aligneval.lo `test -f 'aligneval.c' || echo './'`aligneval.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-cluster.lo `test -f 'cluster.c' || echo './'`cluster.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-dayhoff.lo `test -f 'dayhoff.c' || echo './'`dayhoff.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-dirichlet.lo `test -f 'dirichlet.c' || echo './'`dirichlet.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-eps.lo `test -f 'eps.c' || echo './'`eps.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-iupac.lo `test -f 'iupac.c' || echo './'`iupac.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-revcomp.lo `test -f 'revcomp.c' || echo './'`revcomp.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-rk.lo `test -f 'rk.c' || echo './'`rk.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-seqencode.lo `test -f 'seqencode.c' || echo './'`seqencode.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-shuffle.lo `test -f 'shuffle.c' || echo './'`shuffle.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_math.lo `test -f 'sre_math.c' || echo './'`sre_math.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_stack.lo `test -f 'sre_stack.c' || echo './'`sre_stack.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-translate.lo `test -f 'translate.c' || echo './'`translate.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o alistat_main.o alistat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o aligneval.o aligneval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -fPIC -DPIC -o .libs/libsquid_la-sqio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -fPIC -DPIC -o .libs/libsquid_la-sqerror.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -fPIC -DPIC -o .libs/libsquid_la-msf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -fPIC -DPIC -o .libs/libsquid_la-msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -fPIC -DPIC -o .libs/libsquid_la-aligneval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -fPIC -DPIC -o .libs/libsquid_la-phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -fPIC -DPIC -o .libs/libsquid_la-squidcore.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -fPIC -DPIC -o .libs/libsquid_la-sre_ctype.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -fPIC -DPIC -o .libs/libsquid_la-sre_random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -fPIC -DPIC -o .libs/libsquid_la-selex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -fPIC -DPIC -o .libs/libsquid_la-sre_string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -fPIC -DPIC -o .libs/libsquid_la-cluster.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -fPIC -DPIC -o .libs/libsquid_la-revcomp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -fPIC -DPIC -o .libs/libsquid_la-iupac.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o cluster.o cluster.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -o libsquid_la-squidcore.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -o libsquid_la-sqerror.o >/dev/null 2>&1 hsregex.c: In function 'sqd_regcomp': hsregex.c:328:1: warning: old-style function definition [-Wold-style-definition] 328 | sqd_regcomp(exp) | ^~~~~~~~~~~ hsregex.c: In function 'reg': hsregex.c:417:1: warning: old-style function definition [-Wold-style-definition] 417 | reg(cp, paren, flagp) | ^~~ hsregex.c: In function 'regbranch': hsregex.c:487:1: warning: old-style function definition [-Wold-style-definition] 487 | regbranch(cp, flagp) | ^~~~~~~~~ hsregex.c: In function 'regpiece': hsregex.c:528:1: warning: old-style function definition [-Wold-style-definition] 528 | regpiece(cp, flagp) | ^~~~~~~~ hsregex.c: In function 'regatom': hsregex.c:597:1: warning: old-style function definition [-Wold-style-definition] 597 | regatom(cp, flagp) | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 hsregex.c: In function 'regnode': hsregex.c:708:1: warning: old-style function definition [-Wold-style-definition] 708 | regnode(cp, op) | ^~~~~~~ hsregex.c: In function 'regc': hsregex.c:733:1: warning: old-style function definition [-Wold-style-definition] 733 | regc(cp, b) | ^~~~ hsregex.c: In function 'reginsert': hsregex.c:749:1: warning: old-style function definition [-Wold-style-definition] 749 | reginsert(cp, op, opnd) | ^~~~~~~~~ hsregex.c: In function 'regtail': hsregex.c:774:1: warning: old-style function definition [-Wold-style-definition] 774 | regtail(cp, p, val) | ^~~~~~~ hsregex.c: In function 'regoptail': hsregex.c:799:1: warning: old-style function definition [-Wold-style-definition] 799 | regoptail(cp, p, val) | ^~~~~~~~~ hsregex.c: In function 'sqd_regexec': hsregex.c:841:1: warning: old-style function definition [-Wold-style-definition] 841 | sqd_regexec(prog, str) | ^~~~~~~~~~~ hsregex.c: In function 'regtry': hsregex.c:895:1: warning: old-style function definition [-Wold-style-definition] 895 | regtry(ep, prog, string) | ^~~~~~ hsregex.c: In function 'regmatch': hsregex.c:931:1: warning: old-style function definition [-Wold-style-definition] 931 | regmatch(ep, prog) | ^~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 hsregex.c: In function 'regrepeat': hsregex.c:1090:1: warning: old-style function definition [-Wold-style-definition] 1090 | regrepeat(ep, node) | ^~~~~~~~~ hsregex.c: In function 'regnext': hsregex.c:1129:1: warning: old-style function definition [-Wold-style-definition] 1129 | regnext(p) | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -o libsquid_la-sre_ctype.o >/dev/null 2>&1 hsregex.c: In function 'sqd_regsub': hsregex.c:1275:1: warning: old-style function definition [-Wold-style-definition] 1275 | sqd_regsub(rp, source, dest) | ^~~~~~~~~~ hsregex.c: In function 'sqd_regerror': hsregex.c:1324:1: warning: old-style function definition [-Wold-style-definition] 1324 | sqd_regerror(s) | ^~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -o libsquid_la-rk.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -o libsquid_la-file.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -o libsquid_la-eps.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -o libsquid_la-clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -o libsquid_la-types.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -o libsquid_la-sre_random.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_math.o sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -o libsquid_la-gki.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_stack.o sre_stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1 dirichlet.c: In function 'AllocDirichlet': dirichlet.c:375:3: warning: '__builtin_strcpy' writing one too many bytes into a region of a size that depends on 'strlen' [-Wstringop-overflow=] 375 | strcpy(d->alphabet, alphabet); | ^ dirichlet.c:374:17: note: destination object of size [0, 2147483647] allocated by 'malloc' 374 | d->alphabet = malloc(sizeof(char) * d->K); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compalign_main.o compalign_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -o libsquid_la-sre_string.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compstruct_main.o compstruct_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o wuss.o wuss.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -o libsquid_la-phylip.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp_main.o revcomp_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp.o revcomp.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle.o shuffle.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqsplit_main.o seqsplit_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqstat_main.o seqstat_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -o libsquid_la-msf.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sfetch_main.o sfetch_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle_main.o shuffle_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o iupac.o iupac.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sindex_main.o sindex_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sreformat_main.o sreformat_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o eps.o eps.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate_main.o translate_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate.o translate.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight_main.o weight_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight.o weight.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -o libsquid_la-stockholm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -o libsquid_la-alignio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -o libsquid_la-hsregex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -o libsquid_la-selex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -o libsquid_la-ssi.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -o libsquid_la-msa.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -o libsquid_la-sqio.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/x86_64-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1") libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so") libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o libsquid_la-weight.o libsquid_la-wuss.o libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch* ln -s .libs/libsquid.a dh_auto_test make -j40 check TESTSUITEFLAGS="-j40 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' (cd Testsuite; make CC="gcc" CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection") make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c sqdconfig_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c iospeed_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c rndspeed_main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o sqdconfig sqdconfig_main.o -lsquid -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o rndspeed rndspeed_main.o -lsquid -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o iospeed iospeed_main.o -lsquid -lm /usr/bin/ld: iospeed_main.o: in function `main': ./Testsuite/./Testsuite/iospeed_main.c:28:(.text.startup+0x33): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' (cd Testsuite; make check) make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' fgets(): 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00 sre_fgets(): 0.07u 0.01s 00:00:00.08 Elapsed: 00:00:00 ReadSeq(): 0.16u 0.03s 00:00:00.19 Elapsed: 00:00:00 iospeed: ok rand(): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00 sre_random(): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00 rndspeed: ok x-base-afetch basic tests of afetch ... ok. x-base-alistat basic tests of alistat ... ok. x-base-seqstat basic tests of seqstat ... ok. x-base-sfetch basic tests of sfetch ... ok. x-base-shuffle basic tests of shuffle ... ok. x-base-sindex basic tests of sindex ... ok. x-base-sreformat basic tests of sreformat ... ok. bug-1-sfetch-path sfetch/SSI path bug ... ok. make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -fr -- /tmp/dh-xdg-rundir-7JRtJm5E cd Testsuite && make clean make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' rm -f *.o *~ Makefile.bak core iospeed rndspeed TAGS gmon.out sqdconfig make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars rm -fr -- debian/.debhelper/generated/biosquid/ debian/biosquid/ debian/tmp/ debian/.debhelper/generated/libsquid1t64/ debian/libsquid1t64/ debian/.debhelper/generated/libsquid-dev/ debian/libsquid-dev/ dh_auto_install install -m0755 -d /build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsquid.so.1.0.0 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so.1 || { rm -f libsquid.so.1 && ln -s libsquid.so.1.0.0 libsquid.so.1; }; }) libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so || { rm -f libsquid.so && ln -s libsquid.so.1.0.0 libsquid.so; }; }) libtool: install: /usr/bin/install -c .libs/libsquid.lai /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.la libtool: install: /usr/bin/install -c .libs/libsquid.a /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: chmod 644 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: ranlib /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/afetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/afetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/alistat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/alistat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compalign /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compalign libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compstruct /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compstruct libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/revcomp /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/revcomp libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqsplit /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqsplit libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqstat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqstat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sfetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sfetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/shuffle /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/shuffle libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sindex /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sindex libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sreformat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sreformat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/weight /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/weight /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/install -c -m 644 dirichlet.h rk.h sqfuncs.h gki.h msa.h sre_random.h sre_stack.h ssi.h stopwatch.h vectorops.h '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libsquid.pc '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/stranslate dh_install install -m0755 -d debian/biosquid/usr cp --reflink=auto -a debian/tmp/usr/bin debian/biosquid/usr/ d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev squid.h usr/include/biosquid \ --movedev squidconf.h usr/include/biosquid \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libsquid.so Library package automatic movement utility set -e install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libsquid1t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1 debian/libsquid1t64/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/x86_64-linux-gnu PKGDEV=libsquid-dev PKGSHL=libsquid1t64 install -d -m 755 debian/libsquid-dev/usr/include mv debian/tmp/usr/include/biosquid debian/libsquid-dev/usr/include install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squid.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squidconf.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name "lib*.la" -delete # resolve @LICENSE@ by text in header files for HEADER in /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/include/biosquid/*.h ; do \ if grep -q '@LICENSE@' ${HEADER} ; then \ sed '/@LICENSE@/,$d' ${HEADER} > ${HEADER}_tmp ; \ sed 's/^/ * /' Licenses/gnu >> ${HEADER}_tmp ; \ sed '0,/@LICENSE@/d' ${HEADER} >> ${HEADER}_tmp ; \ mv ${HEADER}_tmp ${HEADER} ; \ fi ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installdocs install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/biosquid.README.Debian debian/biosquid/usr/share/doc/biosquid/README.Debian install -p -m0644 debian/copyright debian/biosquid/usr/share/doc/biosquid/copyright install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/copyright debian/libsquid1t64/usr/share/doc/libsquid1t64/copyright install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/README.test debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/tests/run-unit-test debian/libsquid-dev/usr/share/doc/libsquid-dev chmod -R u\+rw,go=rX debian/libsquid-dev/usr/share/doc install -p -m0644 debian/libsquid-dev.README.Debian debian/libsquid-dev/usr/share/doc/libsquid-dev/README.Debian install -p -m0644 debian/copyright debian/libsquid-dev/usr/share/doc/libsquid-dev/copyright dh_installchangelogs install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -p -m0644 debian/.debhelper/generated/libsquid-dev/dh_installchangelogs.dch.trimmed debian/libsquid-dev/usr/share/doc/libsquid-dev/changelog.Debian install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/.debhelper/generated/libsquid1t64/dh_installchangelogs.dch.trimmed debian/libsquid1t64/usr/share/doc/libsquid1t64/changelog.Debian install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/.debhelper/generated/biosquid/dh_installchangelogs.dch.trimmed debian/biosquid/usr/share/doc/biosquid/changelog.Debian rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installexamples install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Testsuite debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Formats debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean /bin/sh: 1: cd: can't cd to /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight test -z "" || rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight rm -f libsquid.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/share/doc/libsquid-dev/examples/Formats/*.pl make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installman install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/compalign.1 debian/biosquid/usr/share/man/man1/compalign.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/revcomp.1 debian/biosquid/usr/share/man/man1/revcomp.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/seqsplit.1 debian/biosquid/usr/share/man/man1/seqsplit.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/stranslate.1 debian/biosquid/usr/share/man/man1/stranslate.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/weight.1 debian/biosquid/usr/share/man/man1/weight.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/compalign.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/revcomp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/stranslate.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/revcomp.1 mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 mv debian/biosquid/usr/share/man/man1/compalign.1.dh-new debian/biosquid/usr/share/man/man1/compalign.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/compalign.1 mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/seqsplit.1.dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/seqsplit.1 for manpage in Man/*.man; do \ cp -a ${manpage} /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid/usr/share/man/man1/`basename ${manpage} .man`.1 ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_lintian install -m0755 -d debian/libsquid1t64/usr/share/lintian/overrides install -p -m0644 debian/libsquid1t64.lintian-overrides debian/libsquid1t64/usr/share/lintian/overrides/libsquid1t64 dh_perl dh_link rm -f debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1 ln -s libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1 rm -f debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so ln -s libsquid.so.1.0.0 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so dh_strip_nondeterminism dh_compress cd debian/biosquid cd debian/libsquid1t64 cd debian/libsquid-dev chmod a-x usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/libsquid-dev/changelog.Debian gzip -9nf usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid-dev/changelog.Debian gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_fixperms find debian/biosquid ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/doc -type f -a -true -a ! -regex 'debian/biosquid/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid1t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libsquid1t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libsquid-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -- debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/weight objcopy --compress-debug-sections debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug chmod 0644 -- debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.a install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74 objcopy --only-keep-debug --compress-debug-sections debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug debian/biosquid/usr/bin/shuffle install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight objcopy --add-gnu-debuglink debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug debian/biosquid/usr/bin/weight install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc ln -s libsquid1t64 debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc/libsquid1t64-dbgsym install -m0755 -d debian/.debhelper/libsquid1t64 install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug debian/biosquid/usr/bin/seqsplit install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug debian/biosquid/usr/bin/sindex install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug debian/biosquid/usr/bin/alistat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug debian/biosquid/usr/bin/sreformat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug debian/biosquid/usr/bin/afetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug debian/biosquid/usr/bin/sfetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug debian/biosquid/usr/bin/compalign install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug debian/biosquid/usr/bin/revcomp install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compstruct debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compstruct objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug debian/biosquid/usr/bin/compstruct install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug debian/biosquid/usr/bin/stranslate install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug debian/biosquid/usr/bin/seqstat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/biosquid/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/biosquid/usr/lib/debug install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/share/doc ln -s biosquid debian/.debhelper/biosquid/dbgsym-root/usr/share/doc/biosquid-dbgsym install -m0755 -d debian/.debhelper/biosquid dh_makeshlibs -a rm -f debian/biosquid/DEBIAN/shlibs rm -f debian/libsquid1t64/DEBIAN/shlibs install -m0755 -d debian/libsquid1t64/DEBIAN echo "libsquid 1 libsquid1t64 (>= 1.9g+cvs20050121)" >> debian/libsquid1t64/DEBIAN/shlibs chmod 0644 -- debian/libsquid1t64/DEBIAN/shlibs mv debian/.debhelper/generated/libsquid1t64/triggers.new debian/.debhelper/generated/libsquid1t64/triggers mv debian/libsquid1t64.substvars.new debian/libsquid1t64.substvars rm -f debian/libsquid-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libsquid1t64/DEBIAN dpkg-shlibdeps -Tdebian/libsquid1t64.substvars debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/DEBIAN dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/seqstat dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sqrt used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol floor used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol tan used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dh_installdeb install -m0755 -d debian/biosquid/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libsquid1t64/triggers debian/libsquid1t64/DEBIAN/triggers install -m0755 -d debian/libsquid-dev/DEBIAN dh_gencontrol install -m0755 -d debian/biosquid/DEBIAN echo misc:Depends= >> debian/biosquid.substvars echo misc:Pre-Depends= >> debian/biosquid.substvars install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/.debhelper/biosquid/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=biosquid-dbgsym -DDepends="biosquid (= \${binary:Version})" -DDescription="debug symbols for biosquid" -DBuild-Ids="1c514dd07f670e4e5cd3a0659b6894a411b3a0c1 40f5850ea6f56c3246a2907c446ca018c037873f 6adc41c122360f44848814587da506c4ca08d0c0 6d17a6c78b35d682190283785089f5902b3ac674 8b7728d02342cab88f1f1a84f4ea14d6f0c9e1ff 975aa91651a1a692793a24655e7fcae143558d37 9a738b97750351a0631e6d9d88b87d22765b65a7 ae0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd bc5f0a98c4af4fbc507bbe1911a0a035423badef cd35a3b45190ce6d8febbae38239b85da1a801d2 dc07d98d395ccd7319caefec77eb137bfa2fa2e4 dd30005d71d0da742a841c5d0af595c3a771f45d f5e120cc3178fc74085975a7145a6d67479321ab" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libsquid-dev/DEBIAN echo misc:Depends= >> debian/libsquid-dev.substvars echo misc:Pre-Depends= >> debian/libsquid-dev.substvars dpkg-gencontrol -plibsquid-dev -ldebian/changelog -Tdebian/libsquid-dev.substvars -cdebian/control -Pdebian/libsquid-dev install -m0755 -d debian/libsquid1t64/DEBIAN echo misc:Depends= >> debian/libsquid1t64.substvars echo misc:Pre-Depends= >> debian/libsquid1t64.substvars install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/.debhelper/libsquid1t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libsquid1t64-dbgsym -DDepends="libsquid1t64 (= \${binary:Version})" -DDescription="debug symbols for libsquid1t64" -DBuild-Ids=745d2253ea6d90f61335adc261e10d1018d01031 -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/libsquid1t64 dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libsquid-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/biosquid chmod 0644 -- debian/libsquid1t64/DEBIAN/control chmod 0644 -- debian/biosquid/DEBIAN/control dh_md5sums install -m0755 -d debian/libsquid-dev/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN install -m0755 -d debian/biosquid/DEBIAN cd debian/libsquid1t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/biosquid >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libsquid1t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN chmod 0644 -- debian/biosquid/DEBIAN/md5sums install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN chmod 0644 -- debian/libsquid-dev/DEBIAN/md5sums cd debian/.debhelper/libsquid1t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/biosquid/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/biosquid .. dpkg-deb --root-owner-group --build debian/.debhelper/biosquid/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid1t64 .. dpkg-deb --root-owner-group --build debian/.debhelper/libsquid1t64/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb: building package 'biosquid' in '../biosquid_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'biosquid-dbgsym' in '../biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid1t64' in '../libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid1t64-dbgsym' in '../libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo dpkg-genchanges --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/617771 and its subdirectories I: Current time: Fri Oct 31 13:18:53 -12 2025 I: pbuilder-time-stamp: 1761959933 Sat Nov 1 01:18:53 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sat Nov 1 01:18:53 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sat Nov 1 01:18:53 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sat Nov 1 01:18:53 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-zSFZQ1' ==================================================================================== Fri Dec 4 07:41:55 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 biosquid forky /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o 1.9g+cvs20050121-15.1" as arguments. Fri Dec 4 07:41:55 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-fKeBeGt9" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 4 07:41:55 UTC 2026 I: Downloading source for forky/biosquid=1.9g+cvs20050121-15.1 Reading package lists... NOTICE: 'biosquid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biosquid.git Please use: git clone https://salsa.debian.org/med-team/biosquid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 321 kB of source archives. Get:1 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (dsc) [2242 B] Get:2 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (tar) [304 kB] Get:3 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (diff) [14.8 kB] Fetched 321 kB in 0s (14.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biosquid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biosquid.git Please use: git clone https://salsa.debian.org/med-team/biosquid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 321 kB of source archives. Get:1 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (dsc) [2242 B] Get:2 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (tar) [304 kB] Get:3 http://deb.debian.org/debian forky/main biosquid 1.9g+cvs20050121-15.1 (diff) [14.8 kB] Fetched 321 kB in 0s (14.5 MB/s) Download complete and in download only mode ============================================================================= Re-Building biosquid in forky on amd64 on ionos15-amd64 now. Date: Fri Dec 4 07:41:55 UTC 2026 Date UTC: Fri Dec 4 07:41:55 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/pbuilderrc_3CcH + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' biosquid = debian-installer -o biosquid = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' biosquid = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/pbuilderrc_3CcH --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b2 --logfile b2/build.log biosquid_1.9g+cvs20050121-15.1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 21:41:55 +14 2026 I: pbuilder-time-stamp: 1796370115 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biosquid_1.9g+cvs20050121-15.1.dsc] I: copying [./biosquid_1.9g+cvs20050121.orig.tar.gz] I: copying [./biosquid_1.9g+cvs20050121-15.1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biosquid_1.9g+cvs20050121-15.1.dsc: no acceptable signature found dpkg-source: info: extracting biosquid in biosquid-1.9g+cvs20050121 dpkg-source: info: unpacking biosquid_1.9g+cvs20050121.orig.tar.gz dpkg-source: info: unpacking biosquid_1.9g+cvs20050121-15.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying afetch.man.patch dpkg-source: info: applying alistat.man.patch dpkg-source: info: applying compstruct.man.patch dpkg-source: info: applying Makefile.in.patch dpkg-source: info: applying seqstat.man.patch dpkg-source: info: applying sfetch.man.patch dpkg-source: info: applying shuffle.man.patch dpkg-source: info: applying sindex.man.patch dpkg-source: info: applying sreformat.man.patch dpkg-source: info: applying getopt-segmentation-fault.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying perl-testsuite-inc.patch dpkg-source: info: applying automake.patch dpkg-source: info: applying pkg-config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 4 07:42 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=ef8e6a62ba8a47abb746b272c04a7f67 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2254027 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/pbuilderrc_3CcH --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b2 --logfile b2/build.log biosquid_1.9g+cvs20050121-15.1.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106); however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 42.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 23 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Fetched 11.3 MB in 2s (5421 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../25-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-15.1_source.changes dpkg-buildpackage: info: source package biosquid dpkg-buildpackage: info: source version 1.9g+cvs20050121-15.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steve Langasek dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars debian/files rm -fr -- debian/biosquid/ debian/tmp/ debian/libsquid1t64/ debian/libsquid-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config cp -a --update=none --reflink=auto config.sub debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:47: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level configure.ac:75: installing './compile' configure.ac:77: installing './config.guess' configure.ac:40: installing './missing' Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' # autoreconf && true autoconf configure.ac:47: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:47: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:47: the top level configure.ac:77: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:77: You should run autoupdate. aclocal.m4:122: AC_PROG_LIBTOOL is expanded from... configure.ac:77: the top level configure.ac:154: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:154: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from... configure.ac:154: the top level configure.ac:169: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:169: You should run autoupdate. ./lib/autoconf/general.m4:2845: AC_TRY_COMPILE is expanded from... lib/m4sugar/m4sh.m4:697: AS_IF is expanded from... ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from... configure.ac:169: the top level dh_auto_configure -- --enable-lfs # --enable-pvm ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-lfs checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '2222' is supported by ustar format... yes checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar configure: configuring the SQUID library for your system. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/x86_64-linux-gnu-ld checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ar... /usr/bin/ar checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 8 checking size of unsigned long long... 8 checking for strtoul... yes checking for strtoull... yes checking whether fpos_t is an arithmetic datatype... no. checking for strtoull... (cached) yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for stat64... yes checking for struct stat64... no! checking size of off_t... 8 checking size of off64_t... 0 checking size of fpos_t... 16 configure: configured for optional LFS, large file support checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Testsuite/Makefile config.status: creating squid.h config.status: creating libsquid.pc config.status: creating squidconf.h config.status: executing depfiles commands config.status: executing libtool commands # avoid duplicated definition of PACKAGE_NAME (basically conflicting with hmmer2 when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ squidconf.h make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o afetch_main.o afetch_main.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-gki.lo `test -f 'gki.c' || echo './'`gki.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-hsregex.lo `test -f 'hsregex.c' || echo './'`hsregex.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-msa.lo `test -f 'msa.c' || echo './'`msa.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-msf.lo `test -f 'msf.c' || echo './'`msf.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-selex.lo `test -f 'selex.c' || echo './'`selex.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sqerror.lo `test -f 'sqerror.c' || echo './'`sqerror.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sqio.lo `test -f 'sqio.c' || echo './'`sqio.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-squidcore.lo `test -f 'squidcore.c' || echo './'`squidcore.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_ctype.lo `test -f 'sre_ctype.c' || echo './'`sre_ctype.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_random.lo `test -f 'sre_random.c' || echo './'`sre_random.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_string.lo `test -f 'sre_string.c' || echo './'`sre_string.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-ssi.lo `test -f 'ssi.c' || echo './'`ssi.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-stockholm.lo `test -f 'stockholm.c' || echo './'`stockholm.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-types.lo `test -f 'types.c' || echo './'`types.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-vectorops.lo `test -f 'vectorops.c' || echo './'`vectorops.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-aligneval.lo `test -f 'aligneval.c' || echo './'`aligneval.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-cluster.lo `test -f 'cluster.c' || echo './'`cluster.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-dayhoff.lo `test -f 'dayhoff.c' || echo './'`dayhoff.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-dirichlet.lo `test -f 'dirichlet.c' || echo './'`dirichlet.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-eps.lo `test -f 'eps.c' || echo './'`eps.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-iupac.lo `test -f 'iupac.c' || echo './'`iupac.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-revcomp.lo `test -f 'revcomp.c' || echo './'`revcomp.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-rk.lo `test -f 'rk.c' || echo './'`rk.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-seqencode.lo `test -f 'seqencode.c' || echo './'`seqencode.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-shuffle.lo `test -f 'shuffle.c' || echo './'`shuffle.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_math.lo `test -f 'sre_math.c' || echo './'`sre_math.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_stack.lo `test -f 'sre_stack.c' || echo './'`sre_stack.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-translate.lo `test -f 'translate.c' || echo './'`translate.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o alistat_main.o alistat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o aligneval.o aligneval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o cluster.o cluster.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_math.o sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -fPIC -DPIC -o .libs/libsquid_la-phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -fPIC -DPIC -o .libs/libsquid_la-sqerror.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -fPIC -DPIC -o .libs/libsquid_la-selex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -fPIC -DPIC -o .libs/libsquid_la-msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -fPIC -DPIC -o .libs/libsquid_la-sre_random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -fPIC -DPIC -o .libs/libsquid_la-squidcore.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -fPIC -DPIC -o .libs/libsquid_la-sqio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -fPIC -DPIC -o .libs/libsquid_la-msf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -fPIC -DPIC -o .libs/libsquid_la-cluster.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -fPIC -DPIC -o .libs/libsquid_la-sre_string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -fPIC -DPIC -o .libs/libsquid_la-sre_ctype.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -fPIC -DPIC -o .libs/libsquid_la-aligneval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -fPIC -DPIC -o .libs/libsquid_la-iupac.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -fPIC -DPIC -o .libs/libsquid_la-revcomp.o hsregex.c: In function 'sqd_regcomp': hsregex.c:328:1: warning: old-style function definition [-Wold-style-definition] 328 | sqd_regcomp(exp) | ^~~~~~~~~~~ hsregex.c: In function 'reg': hsregex.c:417:1: warning: old-style function definition [-Wold-style-definition] 417 | reg(cp, paren, flagp) | ^~~ hsregex.c: In function 'regbranch': hsregex.c:487:1: warning: old-style function definition [-Wold-style-definition] 487 | regbranch(cp, flagp) | ^~~~~~~~~ hsregex.c: In function 'regpiece': hsregex.c:528:1: warning: old-style function definition [-Wold-style-definition] 528 | regpiece(cp, flagp) | ^~~~~~~~ hsregex.c: In function 'regatom': hsregex.c:597:1: warning: old-style function definition [-Wold-style-definition] 597 | regatom(cp, flagp) | ^~~~~~~ hsregex.c: In function 'regnode': hsregex.c:708:1: warning: old-style function definition [-Wold-style-definition] 708 | regnode(cp, op) | ^~~~~~~ hsregex.c: In function 'regc': hsregex.c:733:1: warning: old-style function definition [-Wold-style-definition] 733 | regc(cp, b) | ^~~~ hsregex.c: In function 'reginsert': hsregex.c:749:1: warning: old-style function definition [-Wold-style-definition] 749 | reginsert(cp, op, opnd) | ^~~~~~~~~ hsregex.c: In function 'regtail': hsregex.c:774:1: warning: old-style function definition [-Wold-style-definition] 774 | regtail(cp, p, val) | ^~~~~~~ hsregex.c: In function 'regoptail': hsregex.c:799:1: warning: old-style function definition [-Wold-style-definition] 799 | regoptail(cp, p, val) | ^~~~~~~~~ hsregex.c: In function 'sqd_regexec': hsregex.c:841:1: warning: old-style function definition [-Wold-style-definition] 841 | sqd_regexec(prog, str) | ^~~~~~~~~~~ hsregex.c: In function 'regtry': hsregex.c:895:1: warning: old-style function definition [-Wold-style-definition] 895 | regtry(ep, prog, string) | ^~~~~~ hsregex.c: In function 'regmatch': hsregex.c:931:1: warning: old-style function definition [-Wold-style-definition] 931 | regmatch(ep, prog) | ^~~~~~~~ hsregex.c: In function 'regrepeat': hsregex.c:1090:1: warning: old-style function definition [-Wold-style-definition] 1090 | regrepeat(ep, node) | ^~~~~~~~~ hsregex.c: In function 'regnext': hsregex.c:1129:1: warning: old-style function definition [-Wold-style-definition] 1129 | regnext(p) | ^~~~~~~ hsregex.c: In function 'sqd_regsub': hsregex.c:1275:1: warning: old-style function definition [-Wold-style-definition] 1275 | sqd_regsub(rp, source, dest) | ^~~~~~~~~~ hsregex.c: In function 'sqd_regerror': hsregex.c:1324:1: warning: old-style function definition [-Wold-style-definition] 1324 | sqd_regerror(s) | ^~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_stack.o sre_stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -o libsquid_la-squidcore.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -o libsquid_la-sre_ctype.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -o libsquid_la-sqerror.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compalign_main.o compalign_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -o libsquid_la-eps.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -o libsquid_la-clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -o libsquid_la-rk.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -o libsquid_la-file.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -o libsquid_la-types.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -o libsquid_la-phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -o libsquid_la-gki.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -o libsquid_la-sre_random.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compstruct_main.o compstruct_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o wuss.o wuss.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 dirichlet.c: In function 'AllocDirichlet': dirichlet.c:375:3: warning: '__builtin_strcpy' writing one too many bytes into a region of a size that depends on 'strlen' [-Wstringop-overflow=] 375 | strcpy(d->alphabet, alphabet); | ^ dirichlet.c:374:17: note: destination object of size [0, 2147483647] allocated by 'malloc' 374 | d->alphabet = malloc(sizeof(char) * d->K); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp_main.o revcomp_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp.o revcomp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -o libsquid_la-sre_string.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle.o shuffle.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqsplit_main.o seqsplit_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqstat_main.o seqstat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sfetch_main.o sfetch_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle_main.o shuffle_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o iupac.o iupac.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sindex_main.o sindex_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sreformat_main.o sreformat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o eps.o eps.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -o libsquid_la-msf.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate_main.o translate_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate.o translate.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight_main.o weight_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight.o weight.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -o libsquid_la-stockholm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -o libsquid_la-alignio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -o libsquid_la-selex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -o libsquid_la-hsregex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -o libsquid_la-msa.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -o libsquid_la-ssi.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -o libsquid_la-sqio.o >/dev/null 2>&1 /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/x86_64-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1") libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so") libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o libsquid_la-weight.o libsquid_la-wuss.o libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars rm -fr -- debian/.debhelper/generated/biosquid/ debian/biosquid/ debian/tmp/ debian/.debhelper/generated/libsquid1t64/ debian/libsquid1t64/ debian/.debhelper/generated/libsquid-dev/ debian/libsquid-dev/ dh_auto_install install -m0755 -d /build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/biosquid-1.9g\+cvs20050121/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/sh ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsquid.so.1.0.0 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so.1 || { rm -f libsquid.so.1 && ln -s libsquid.so.1.0.0 libsquid.so.1; }; }) libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so || { rm -f libsquid.so && ln -s libsquid.so.1.0.0 libsquid.so; }; }) libtool: install: /usr/bin/install -c .libs/libsquid.lai /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.la libtool: install: /usr/bin/install -c .libs/libsquid.a /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: chmod 644 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: ranlib /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' /bin/sh ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/afetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/afetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/alistat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/alistat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compalign /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compalign libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compstruct /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compstruct libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/revcomp /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/revcomp libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqsplit /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqsplit libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqstat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqstat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sfetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sfetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/shuffle /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/shuffle libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sindex /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sindex libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sreformat /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sreformat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/weight /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/weight /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/install -c -m 644 dirichlet.h rk.h sqfuncs.h gki.h msa.h sre_random.h sre_stack.h ssi.h stopwatch.h vectorops.h '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libsquid.pc '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/stranslate dh_install install -m0755 -d debian/biosquid/usr cp --reflink=auto -a debian/tmp/usr/bin debian/biosquid/usr/ d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev squid.h usr/include/biosquid \ --movedev squidconf.h usr/include/biosquid \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libsquid.so Library package automatic movement utility set -e install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libsquid1t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1 debian/libsquid1t64/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/x86_64-linux-gnu PKGDEV=libsquid-dev PKGSHL=libsquid1t64 install -d -m 755 debian/libsquid-dev/usr/include mv debian/tmp/usr/include/biosquid debian/libsquid-dev/usr/include install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squid.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squidconf.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name "lib*.la" -delete # resolve @LICENSE@ by text in header files for HEADER in /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/include/biosquid/*.h ; do \ if grep -q '@LICENSE@' ${HEADER} ; then \ sed '/@LICENSE@/,$d' ${HEADER} > ${HEADER}_tmp ; \ sed 's/^/ * /' Licenses/gnu >> ${HEADER}_tmp ; \ sed '0,/@LICENSE@/d' ${HEADER} >> ${HEADER}_tmp ; \ mv ${HEADER}_tmp ${HEADER} ; \ fi ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installdocs install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/biosquid.README.Debian debian/biosquid/usr/share/doc/biosquid/README.Debian install -p -m0644 debian/copyright debian/biosquid/usr/share/doc/biosquid/copyright install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/copyright debian/libsquid1t64/usr/share/doc/libsquid1t64/copyright install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/README.test debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/tests/run-unit-test debian/libsquid-dev/usr/share/doc/libsquid-dev chmod -R u\+rw,go=rX debian/libsquid-dev/usr/share/doc install -p -m0644 debian/libsquid-dev.README.Debian debian/libsquid-dev/usr/share/doc/libsquid-dev/README.Debian install -p -m0644 debian/copyright debian/libsquid-dev/usr/share/doc/libsquid-dev/copyright dh_installchangelogs install -m0755 -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/.debhelper/generated/biosquid/dh_installchangelogs.dch.trimmed debian/biosquid/usr/share/doc/biosquid/changelog.Debian install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -p -m0644 debian/.debhelper/generated/libsquid-dev/dh_installchangelogs.dch.trimmed debian/libsquid-dev/usr/share/doc/libsquid-dev/changelog.Debian install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/.debhelper/generated/libsquid1t64/dh_installchangelogs.dch.trimmed debian/libsquid1t64/usr/share/doc/libsquid1t64/changelog.Debian rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installexamples install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Testsuite debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Formats debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean /bin/sh: line 1: cd: /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite: No such file or directory make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight test -z "" || rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight rm -f libsquid.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/share/doc/libsquid-dev/examples/Formats/*.pl make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_installman install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/compalign.1 debian/biosquid/usr/share/man/man1/compalign.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/revcomp.1 debian/biosquid/usr/share/man/man1/revcomp.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/seqsplit.1 debian/biosquid/usr/share/man/man1/seqsplit.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/stranslate.1 debian/biosquid/usr/share/man/man1/stranslate.1 install -m0755 -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/weight.1 debian/biosquid/usr/share/man/man1/weight.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/compalign.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/revcomp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/stranslate.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/compalign.1.dh-new debian/biosquid/usr/share/man/man1/compalign.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/compalign.1 mv debian/biosquid/usr/share/man/man1/seqsplit.1.dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/seqsplit.1 mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/revcomp.1 for manpage in Man/*.man; do \ cp -a ${manpage} /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid/usr/share/man/man1/`basename ${manpage} .man`.1 ; \ done make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_lintian install -m0755 -d debian/libsquid1t64/usr/share/lintian/overrides install -p -m0644 debian/libsquid1t64.lintian-overrides debian/libsquid1t64/usr/share/lintian/overrides/libsquid1t64 dh_perl dh_link rm -f debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1 ln -s libsquid.so.1.0.0 debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1 rm -f debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so ln -s libsquid.so.1.0.0 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so dh_strip_nondeterminism dh_compress cd debian/biosquid cd debian/libsquid1t64 cd debian/libsquid-dev chmod a-x usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/libsquid-dev/changelog.Debian chmod a-x usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid1t64/changelog.Debian gzip -9nf usr/share/doc/libsquid-dev/changelog.Debian gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_fixperms find debian/biosquid ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/biosquid/usr/share/doc -type f -a -true -a ! -regex 'debian/biosquid/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libsquid1t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libsquid-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -- debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/weight objcopy --compress-debug-sections debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug chmod 0644 -- debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.a install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74 objcopy --only-keep-debug --compress-debug-sections debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug debian/biosquid/usr/bin/seqstat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug debian/biosquid/usr/bin/sindex install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch objcopy --add-gnu-debuglink debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug debian/biosquid/usr/bin/afetch install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc ln -s libsquid1t64 debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc/libsquid1t64-dbgsym install -m0755 -d debian/.debhelper/libsquid1t64 install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug debian/biosquid/usr/bin/weight install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug debian/biosquid/usr/bin/sreformat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug debian/biosquid/usr/bin/stranslate install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug debian/biosquid/usr/bin/sfetch install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug debian/biosquid/usr/bin/shuffle install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug debian/biosquid/usr/bin/revcomp install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug debian/biosquid/usr/bin/alistat install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug debian/biosquid/usr/bin/seqsplit install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compstruct debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compstruct objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug debian/biosquid/usr/bin/compstruct install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug debian/biosquid/usr/bin/compalign install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/biosquid/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/biosquid/usr/lib/debug install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/share/doc ln -s biosquid debian/.debhelper/biosquid/dbgsym-root/usr/share/doc/biosquid-dbgsym install -m0755 -d debian/.debhelper/biosquid dh_makeshlibs -a rm -f debian/biosquid/DEBIAN/shlibs rm -f debian/libsquid1t64/DEBIAN/shlibs install -m0755 -d debian/libsquid1t64/DEBIAN echo "libsquid 1 libsquid1t64 (>= 1.9g+cvs20050121)" >> debian/libsquid1t64/DEBIAN/shlibs chmod 0644 -- debian/libsquid1t64/DEBIAN/shlibs mv debian/.debhelper/generated/libsquid1t64/triggers.new debian/.debhelper/generated/libsquid1t64/triggers mv debian/libsquid1t64.substvars.new debian/libsquid1t64.substvars rm -f debian/libsquid-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libsquid1t64/DEBIAN dpkg-shlibdeps -Tdebian/libsquid1t64.substvars debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/DEBIAN dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/compalign dpkg-shlibdeps: warning: symbol floor used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sqrt used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol tan used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dh_installdeb install -m0755 -d debian/biosquid/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libsquid1t64/triggers debian/libsquid1t64/DEBIAN/triggers install -m0755 -d debian/libsquid-dev/DEBIAN dh_gencontrol install -m0755 -d debian/libsquid-dev/DEBIAN echo misc:Depends= >> debian/libsquid-dev.substvars echo misc:Pre-Depends= >> debian/libsquid-dev.substvars dpkg-gencontrol -plibsquid-dev -ldebian/changelog -Tdebian/libsquid-dev.substvars -cdebian/control -Pdebian/libsquid-dev install -m0755 -d debian/biosquid/DEBIAN echo misc:Depends= >> debian/biosquid.substvars echo misc:Pre-Depends= >> debian/biosquid.substvars install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/.debhelper/biosquid/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=biosquid-dbgsym -DDepends="biosquid (= \${binary:Version})" -DDescription="debug symbols for biosquid" -DBuild-Ids="1c514dd07f670e4e5cd3a0659b6894a411b3a0c1 40f5850ea6f56c3246a2907c446ca018c037873f 6adc41c122360f44848814587da506c4ca08d0c0 6d17a6c78b35d682190283785089f5902b3ac674 8b7728d02342cab88f1f1a84f4ea14d6f0c9e1ff 975aa91651a1a692793a24655e7fcae143558d37 9a738b97750351a0631e6d9d88b87d22765b65a7 ae0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd bc5f0a98c4af4fbc507bbe1911a0a035423badef cd35a3b45190ce6d8febbae38239b85da1a801d2 dc07d98d395ccd7319caefec77eb137bfa2fa2e4 dd30005d71d0da742a841c5d0af595c3a771f45d f5e120cc3178fc74085975a7145a6d67479321ab" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libsquid1t64/DEBIAN echo misc:Depends= >> debian/libsquid1t64.substvars echo misc:Pre-Depends= >> debian/libsquid1t64.substvars install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/.debhelper/libsquid1t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libsquid1t64-dbgsym -DDepends="libsquid1t64 (= \${binary:Version})" -DDescription="debug symbols for libsquid1t64" -DBuild-Ids=745d2253ea6d90f61335adc261e10d1018d01031 -DSection=debug -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/biosquid chmod 0644 -- debian/libsquid-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/libsquid1t64 chmod 0644 -- debian/biosquid/DEBIAN/control chmod 0644 -- debian/libsquid1t64/DEBIAN/control dh_md5sums install -m0755 -d debian/libsquid1t64/DEBIAN install -m0755 -d debian/biosquid/DEBIAN install -m0755 -d debian/libsquid-dev/DEBIAN cd debian/libsquid1t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/biosquid >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libsquid1t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN chmod 0644 -- debian/biosquid/DEBIAN/md5sums install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN chmod 0644 -- debian/libsquid-dev/DEBIAN/md5sums cd debian/.debhelper/libsquid1t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/biosquid/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/biosquid .. dpkg-deb --root-owner-group --build debian/.debhelper/biosquid/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid1t64 .. dpkg-deb --root-owner-group --build debian/.debhelper/libsquid1t64/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb: building package 'biosquid' in '../biosquid_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'biosquid-dbgsym' in '../biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid1t64-dbgsym' in '../libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid1t64' in '../libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo dpkg-genchanges --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2254027 and its subdirectories I: Current time: Fri Dec 4 21:44:05 +14 2026 I: pbuilder-time-stamp: 1796370245 + false + set +x Fri Dec 4 07:44:05 UTC 2026 I: Signing ./b2/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo as biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc Fri Dec 4 07:44:05 UTC 2026 I: Signed ./b2/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo as ./b2/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc Fri Dec 4 07:44:05 UTC 2026 - build #2 for biosquid/forky/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Fri Dec 4 07:44:05 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-fKeBeGt9, removing. /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o: total 152 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 01:18 b1 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 01:21 b2 -rw-rw-r-- 1 jenkins jenkins 2242 Feb 28 2024 biosquid_1.9g+cvs20050121-15.1.dsc -rw------- 1 jenkins jenkins 138325 Nov 1 01:18 rbuildlog.lbqKeN5 /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b1: total 860 -rw-r--r-- 1 jenkins jenkins 183216 Nov 1 01:18 biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 14804 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2242 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1.dsc -rw-r--r-- 1 jenkins jenkins 6233 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7115 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2716 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_amd64.changes -rw-r--r-- 1 jenkins jenkins 79828 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1422 Nov 1 01:18 biosquid_1.9g+cvs20050121-15.1_source.changes -rw-r--r-- 1 jenkins jenkins 134622 Nov 1 01:18 build.log -rw-r--r-- 1 jenkins jenkins 144576 Nov 1 01:18 libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 182964 Nov 1 01:18 libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 76996 Nov 1 01:18 libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b2: total 836 -rw-r--r-- 1 jenkins jenkins 183216 Nov 1 01:21 biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 14804 Nov 1 01:21 biosquid_1.9g+cvs20050121-15.1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2242 Nov 1 01:21 biosquid_1.9g+cvs20050121-15.1.dsc -rw-rw-r-- 1 jenkins jenkins 6241 Nov 1 01:21 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7123 Nov 1 01:21 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 2716 Nov 1 01:21 biosquid_1.9g+cvs20050121-15.1_amd64.changes -rw-r--r-- 1 jenkins jenkins 79828 Nov 1 01:21 biosquid_1.9g+cvs20050121-15.1_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1422 Nov 1 01:21 biosquid_1.9g+cvs20050121-15.1_source.changes -rw-rw-r-- 1 jenkins jenkins 132206 Nov 1 01:21 build.log -rw-r--r-- 1 jenkins jenkins 144572 Nov 1 01:21 libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 182964 Nov 1 01:21 libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb -rw-r--r-- 1 jenkins jenkins 76996 Nov 1 01:21 libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb Sat Nov 1 01:21:07 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sat Nov 1 01:21:07 UTC 2025 I: biosquid_1.9g+cvs20050121-15.1_amd64.changes: Format: 1.8 Date: Wed, 28 Feb 2024 18:29:54 +0000 Source: biosquid Binary: biosquid biosquid-dbgsym libsquid-dev libsquid1t64 libsquid1t64-dbgsym Architecture: amd64 Version: 1.9g+cvs20050121-15.1 Distribution: unstable Urgency: medium Maintainer: Debian-Med Packaging Team Changed-By: Steve Langasek Description: biosquid - utilities for biological sequence analysis libsquid-dev - biosquid headers and static library for biological sequence analy libsquid1t64 - biosquid dynamic library for biological sequence analysis Closes: 1061931 Changes: biosquid (1.9g+cvs20050121-15.1) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1061931 Checksums-Sha1: a363b017461ebcf8460dd5ca2b87ded532c7ce3d 183216 biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb 93e3124c3d20a1ca21828465135b2d370894100f 6233 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo cf5e745e271359284cdab4427b4de47397891c10 79828 biosquid_1.9g+cvs20050121-15.1_amd64.deb e5a572fe83b93719dd19eda2b5409599ce934c7f 144576 libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb aaeffd635cce662714b0dd669a92f044579b5e67 182964 libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb 9ac9a1c35c37cbf10d357170883e9908e3fa40f3 76996 libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb Checksums-Sha256: 58fa520935178ac68c2101b53ba7bf70592edf11131cf72f5d14021ad83601b4 183216 biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb 52df52e4078c1053ba21fcfa880e02d36d84fa679e038391c06e8e380f5cd6b6 6233 biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo e82b338eb9ad656246c831d8f7ab77b1066eab5d986c7565199fe6e06ebd2710 79828 biosquid_1.9g+cvs20050121-15.1_amd64.deb 1dd385aa0a6ed229abb35cf013f66f806c85cf5c4481cfc7687f3f0e987940a0 144576 libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb c780dacef5c3bc8c05793a3f95d3e8dbbe8bd361807e068979d40843e3501b67 182964 libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb fc9e6906be65afbfa59164cf8de2d1888f394833c0c241db4fc7aedd138a3e72 76996 libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb Files: f7c6d7e46e54bd45567670bb054f50e6 183216 debug optional biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb b9295d93c7071ca0308b36c4f28c2c9a 6233 science optional biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo 680b89cb518eaed08202ccf5387b9856 79828 science optional biosquid_1.9g+cvs20050121-15.1_amd64.deb 476a2677faf48f6a4495cd57abdf0ee9 144576 libdevel optional libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb bcaddce002bc90b6d28990729b42805a 182964 debug optional libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb 716a309229992568850969f4ad16b914 76996 libs optional libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/biosquid_1.9g+cvs20050121-15.1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/biosquid_1.9g+cvs20050121-15.1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/biosquid_1.9g+cvs20050121-15.1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/biosquid_1.9g+cvs20050121-15.1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/biosquid_1.9g+cvs20050121-15.1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-11-01 01:18:53.693055294 +0000 +++ b2/build.log 2025-11-01 01:21:07.037210297 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 31 13:17:27 -12 2025 -I: pbuilder-time-stamp: 1761959847 +I: Current time: Fri Dec 4 21:41:55 +14 2026 +I: pbuilder-time-stamp: 1796370115 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -37,53 +37,85 @@ dpkg-source: info: applying pkg-config.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/617771/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 4 07:42 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='903d920c849d4f879be854ab79bf5d19' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='617771' - PS1='# ' - PS2='> ' + INVOCATION_ID=ef8e6a62ba8a47abb746b272c04a7f67 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2254027 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/pbuilderrc_l0xk --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b1 --logfile b1/build.log biosquid_1.9g+cvs20050121-15.1.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/pbuilderrc_3CcH --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b2 --logfile b2/build.log biosquid_1.9g+cvs20050121-15.1.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/617771/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -151,7 +183,7 @@ Get: 28 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] -Fetched 11.3 MB in 3s (4268 kB/s) +Fetched 11.3 MB in 2s (5421 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -286,7 +318,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-15.1_source.changes +I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-15.1_source.changes dpkg-buildpackage: info: source package biosquid dpkg-buildpackage: info: source version 1.9g+cvs20050121-15.1 dpkg-buildpackage: info: source distribution unstable @@ -391,8 +427,8 @@ checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes -checking whether UID '1111' is supported by ustar format... yes -checking whether GID '1111' is supported by ustar format... yes +checking whether UID '2222' is supported by ustar format... yes +checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar configure: configuring the SQUID library for your system. checking for gcc... gcc @@ -512,90 +548,89 @@ squidconf.h make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' dh_auto_build - make -j40 + make -j42 make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o afetch_main.o afetch_main.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c -/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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|| echo './'`dayhoff.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-dirichlet.lo `test -f 'dirichlet.c' || echo './'`dirichlet.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-eps.lo `test -f 'eps.c' || echo './'`eps.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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+/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-seqencode.lo `test -f 'seqencode.c' || echo './'`seqencode.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-shuffle.lo `test -f 'shuffle.c' || echo './'`shuffle.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_math.lo `test -f 'sre_math.c' || echo './'`sre_math.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-sre_stack.lo `test -f 'sre_stack.c' || echo './'`sre_stack.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-translate.lo `test -f 'translate.c' || echo './'`translate.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c +/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o alistat_main.o alistat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o aligneval.o aligneval.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o +gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o cluster.o cluster.c +gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_math.o sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -fPIC -DPIC -o .libs/libsquid_la-phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -fPIC -DPIC -o .libs/libsquid_la-sqio.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -fPIC -DPIC -o .libs/libsquid_la-sqerror.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -fPIC -DPIC -o .libs/libsquid_la-msf.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -fPIC -DPIC -o .libs/libsquid_la-msa.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -fPIC -DPIC -o .libs/libsquid_la-selex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -fPIC -DPIC -o .libs/libsquid_la-msa.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -fPIC -DPIC -o .libs/libsquid_la-sre_random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -fPIC -DPIC -o .libs/libsquid_la-aligneval.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -fPIC -DPIC -o .libs/libsquid_la-phylip.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -fPIC -DPIC -o .libs/libsquid_la-squidcore.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -fPIC -DPIC -o .libs/libsquid_la-sre_ctype.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -fPIC -DPIC -o .libs/libsquid_la-sre_random.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -fPIC -DPIC -o .libs/libsquid_la-selex.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -fPIC -DPIC -o .libs/libsquid_la-sre_string.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -fPIC -DPIC -o .libs/libsquid_la-sqio.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -fPIC -DPIC -o .libs/libsquid_la-msf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -fPIC -DPIC -o .libs/libsquid_la-cluster.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -fPIC -DPIC -o .libs/libsquid_la-revcomp.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -fPIC -DPIC -o .libs/libsquid_la-iupac.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -fPIC -DPIC -o .libs/libsquid_la-sre_string.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -fPIC -DPIC -o .libs/libsquid_la-sre_ctype.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -fPIC -DPIC -o .libs/libsquid_la-aligneval.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -fPIC -DPIC -o .libs/libsquid_la-iupac.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o -gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o cluster.o cluster.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -o libsquid_la-squidcore.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -o libsquid_la-sqerror.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -fPIC -DPIC -o .libs/libsquid_la-revcomp.o hsregex.c: In function 'sqd_regcomp': hsregex.c:328:1: warning: old-style function definition [-Wold-style-definition] 328 | sqd_regcomp(exp) @@ -616,7 +651,6 @@ hsregex.c:597:1: warning: old-style function definition [-Wold-style-definition] 597 | regatom(cp, flagp) | ^~~~~~~ -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 hsregex.c: In function 'regnode': hsregex.c:708:1: warning: old-style function definition [-Wold-style-definition] 708 | regnode(cp, op) @@ -649,7 +683,6 @@ hsregex.c:931:1: warning: old-style function definition [-Wold-style-definition] 931 | regmatch(ep, prog) | ^~~~~~~~ -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 hsregex.c: In function 'regrepeat': hsregex.c:1090:1: warning: old-style function definition [-Wold-style-definition] 1090 | regrepeat(ep, node) @@ -658,7 +691,6 @@ hsregex.c:1129:1: warning: old-style function definition [-Wold-style-definition] 1129 | regnext(p) | ^~~~~~~ -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -o libsquid_la-sre_ctype.o >/dev/null 2>&1 hsregex.c: In function 'sqd_regsub': hsregex.c:1275:1: warning: old-style function definition [-Wold-style-definition] 1275 | sqd_regsub(rp, source, dest) @@ -667,21 +699,31 @@ hsregex.c:1324:1: warning: old-style function definition [-Wold-style-definition] 1324 | sqd_regerror(s) | ^~~~~~~~~~~~ -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 +gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_stack.o sre_stack.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c squidcore.c -o libsquid_la-squidcore.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_ctype.c -o libsquid_la-sre_ctype.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqerror.c -o libsquid_la-sqerror.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -o libsquid_la-rk.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -o libsquid_la-file.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 +gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compalign_main.o compalign_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eps.c -o libsquid_la-eps.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c clustal.c -o libsquid_la-clustal.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c rk.c -o libsquid_la-rk.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c file.c -o libsquid_la-file.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c types.c -o libsquid_la-types.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -o libsquid_la-sre_random.o >/dev/null 2>&1 -gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_math.o sre_math.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -o libsquid_la-phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gki.c -o libsquid_la-gki.o >/dev/null 2>&1 -gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sre_stack.o sre_stack.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_random.c -o libsquid_la-sre_random.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 +gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compstruct_main.o compstruct_main.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1 +gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o wuss.o wuss.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 dirichlet.c: In function 'AllocDirichlet': dirichlet.c:375:3: warning: '__builtin_strcpy' writing one too many bytes into a region of a size that depends on 'strlen' [-Wstringop-overflow=] 375 | strcpy(d->alphabet, alphabet); @@ -689,122 +731,72 @@ dirichlet.c:374:17: note: destination object of size [0, 2147483647] allocated by 'malloc' 374 | d->alphabet = malloc(sizeof(char) * d->K); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 -gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compalign_main.o compalign_main.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -o libsquid_la-sre_string.o >/dev/null 2>&1 -gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o compstruct_main.o compstruct_main.c -gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o wuss.o wuss.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c phylip.c -o libsquid_la-phylip.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp_main.o revcomp_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revcomp.o revcomp.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_string.c -o libsquid_la-sre_string.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle.o shuffle.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqsplit_main.o seqsplit_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqstat_main.o seqstat_main.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -o libsquid_la-msf.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sfetch_main.o sfetch_main.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o shuffle_main.o shuffle_main.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o iupac.o iupac.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sindex_main.o sindex_main.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sreformat_main.o sreformat_main.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o eps.o eps.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msf.c -o libsquid_la-msf.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate_main.o translate_main.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o translate.o translate.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight_main.o weight_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o weight.o weight.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c stockholm.c -o libsquid_la-stockholm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -o libsquid_la-alignio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -o libsquid_la-hsregex.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c alignio.c -o libsquid_la-alignio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c selex.c -o libsquid_la-selex.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -o libsquid_la-ssi.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c hsregex.c -o libsquid_la-hsregex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c msa.c -o libsquid_la-msa.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c ssi.c -o libsquid_la-ssi.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c sqio.c -o libsquid_la-sqio.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/x86_64-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/x86_64-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1") libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so") libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o libsquid_la-weight.o libsquid_la-wuss.o libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm -/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm +/bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' - rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' -chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch* -ln -s .libs/libsquid.a -dh_auto_test - make -j40 check TESTSUITEFLAGS="-j40 --verbose" VERBOSE=1 -make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' -(cd Testsuite; make CC="gcc" CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection") -make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c sqdconfig_main.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c iospeed_main.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DHAVE_CONFIG_H -L../ -I../ -c rndspeed_main.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o sqdconfig sqdconfig_main.o -lsquid -lm -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o rndspeed rndspeed_main.o -lsquid -lm -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L../ -I../ -DHAVE_CONFIG_H -o iospeed iospeed_main.o -lsquid -lm -/usr/bin/ld: iospeed_main.o: in function `main': -./Testsuite/./Testsuite/iospeed_main.c:28:(.text.startup+0x33): warning: the use of `tmpnam' is dangerous, better use `mkstemp' -make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' -(cd Testsuite; make check) -make[3]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' -fgets(): 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00 -sre_fgets(): 0.07u 0.01s 00:00:00.08 Elapsed: 00:00:00 -ReadSeq(): 0.16u 0.03s 00:00:00.19 Elapsed: 00:00:00 -iospeed: ok -rand(): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00 -sre_random(): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00 -rndspeed: ok - x-base-afetch basic tests of afetch ... ok. - x-base-alistat basic tests of alistat ... ok. - x-base-seqstat basic tests of seqstat ... ok. - x-base-sfetch basic tests of sfetch ... ok. - x-base-shuffle basic tests of shuffle ... ok. - x-base-sindex basic tests of sindex ... ok. - x-base-sreformat basic tests of sreformat ... ok. - bug-1-sfetch-path sfetch/SSI path bug ... ok. -make[3]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' -make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' - rm -fr -- /tmp/dh-xdg-rundir-7JRtJm5E -cd Testsuite && make clean -make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' -rm -f *.o *~ Makefile.bak core iospeed rndspeed TAGS gmon.out sqdconfig -make[2]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121/Testsuite' -make[1]: Leaving directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/biosquid.substvars debian/libsquid1t64.substvars debian/libsquid-dev.substvars @@ -815,7 +807,7 @@ make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsquid.so.1.0.0 /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so.1 || { rm -f libsquid.so.1 && ln -s libsquid.so.1.0.0 libsquid.so.1; }; }) libtool: install: (cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so || { rm -f libsquid.so && ln -s libsquid.so.1.0.0 libsquid.so; }; }) @@ -825,7 +817,7 @@ libtool: install: ranlib /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' - /bin/bash ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' + /bin/sh ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/afetch /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/afetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' @@ -918,12 +910,12 @@ install -p -m0644 debian/libsquid-dev.README.Debian debian/libsquid-dev/usr/share/doc/libsquid-dev/README.Debian install -p -m0644 debian/copyright debian/libsquid-dev/usr/share/doc/libsquid-dev/copyright dh_installchangelogs + install -m0755 -d debian/biosquid/usr/share/doc/biosquid + install -p -m0644 debian/.debhelper/generated/biosquid/dh_installchangelogs.dch.trimmed debian/biosquid/usr/share/doc/biosquid/changelog.Debian install -m0755 -d debian/libsquid-dev/usr/share/doc/libsquid-dev install -p -m0644 debian/.debhelper/generated/libsquid-dev/dh_installchangelogs.dch.trimmed debian/libsquid-dev/usr/share/doc/libsquid-dev/changelog.Debian install -m0755 -d debian/libsquid1t64/usr/share/doc/libsquid1t64 install -p -m0644 debian/.debhelper/generated/libsquid1t64/dh_installchangelogs.dch.trimmed debian/libsquid1t64/usr/share/doc/libsquid1t64/changelog.Debian - install -m0755 -d debian/biosquid/usr/share/doc/biosquid - install -p -m0644 debian/.debhelper/generated/biosquid/dh_installchangelogs.dch.trimmed debian/biosquid/usr/share/doc/biosquid/changelog.Debian rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1t64.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' @@ -932,7 +924,7 @@ cp --reflink=auto -a ./Testsuite debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Formats debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cd /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean -/bin/sh: 1: cd: can't cd to /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite +/bin/sh: line 1: cd: /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite: No such file or directory make[2]: Entering directory '/build/reproducible-path/biosquid-1.9g+cvs20050121' rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight test -z "" || rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight @@ -963,16 +955,16 @@ man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/stranslate.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/weight.1 - mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 - chmod 0644 -- debian/biosquid/usr/share/man/man1/revcomp.1 - mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 - chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 mv debian/biosquid/usr/share/man/man1/compalign.1.dh-new debian/biosquid/usr/share/man/man1/compalign.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/compalign.1 - mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 - chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/seqsplit.1.dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/seqsplit.1 + mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 + chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 + mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 + chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 + mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 + chmod 0644 -- debian/biosquid/usr/share/man/man1/revcomp.1 for manpage in Man/*.man; do \ cp -a ${manpage} /build/reproducible-path/biosquid-1.9g+cvs20050121/debian/biosquid/usr/share/man/man1/`basename ${manpage} .man`.1 ; \ done @@ -993,8 +985,8 @@ cd debian/libsquid-dev chmod a-x usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/libsquid-dev/changelog.Debian - gzip -9nf usr/share/doc/libsquid1t64/changelog.Debian chmod a-x usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 + gzip -9nf usr/share/doc/libsquid1t64/changelog.Debian gzip -9nf usr/share/doc/libsquid-dev/changelog.Debian gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 cd '/build/reproducible-path/biosquid-1.9g+cvs20050121' @@ -1004,14 +996,14 @@ find debian/biosquid ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libsquid1t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/doc -type f -a -true -a ! -regex 'debian/biosquid/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libsquid1t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libsquid1t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libsquid1t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 @@ -1028,79 +1020,79 @@ chmod 0644 -- debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.a - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74 objcopy --only-keep-debug --compress-debug-sections debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug debian/biosquid/usr/bin/shuffle - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug debian/biosquid/usr/bin/seqstat + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug debian/biosquid/usr/bin/sindex + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch objcopy --add-gnu-debuglink debian/.debhelper/libsquid1t64/dbgsym-root/usr/lib/debug/.build-id/74/5d2253ea6d90f61335adc261e10d1018d01031.debug debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug debian/biosquid/usr/bin/weight + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug debian/biosquid/usr/bin/afetch install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc ln -s libsquid1t64 debian/.debhelper/libsquid1t64/dbgsym-root/usr/share/doc/libsquid1t64-dbgsym install -m0755 -d debian/.debhelper/libsquid1t64 - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97 - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug debian/biosquid/usr/bin/seqsplit - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1c/514dd07f670e4e5cd3a0659b6894a411b3a0c1.debug debian/biosquid/usr/bin/sindex - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug debian/biosquid/usr/bin/alistat + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/ae/0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd.debug debian/biosquid/usr/bin/weight install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/cd/35a3b45190ce6d8febbae38239b85da1a801d2.debug debian/biosquid/usr/bin/sreformat - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/9a/738b97750351a0631e6d9d88b87d22765b65a7.debug debian/biosquid/usr/bin/afetch + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5 + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug debian/biosquid/usr/bin/stranslate install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dd/30005d71d0da742a841c5d0af595c3a771f45d.debug debian/biosquid/usr/bin/sfetch - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40 - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug debian/biosquid/usr/bin/compalign + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bc/5f0a98c4af4fbc507bbe1911a0a035423badef.debug debian/biosquid/usr/bin/shuffle install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6d/17a6c78b35d682190283785089f5902b3ac674.debug debian/biosquid/usr/bin/revcomp + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/6a/dc41c122360f44848814587da506c4ca08d0c0.debug debian/biosquid/usr/bin/alistat + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97 + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/97/5aa91651a1a692793a24655e7fcae143558d37.debug debian/biosquid/usr/bin/seqsplit install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compstruct debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compstruct objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8b/7728d02342cab88f1f1a84f4ea14d6f0c9e1ff.debug debian/biosquid/usr/bin/compstruct - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5 - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/e120cc3178fc74085975a7145a6d67479321ab.debug debian/biosquid/usr/bin/stranslate - install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc - objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug - chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug - strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat - objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/dc/07d98d395ccd7319caefec77eb137bfa2fa2e4.debug debian/biosquid/usr/bin/seqstat + install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40 + objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug + chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug + strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign + objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/40/f5850ea6f56c3246a2907c446ca018c037873f.debug debian/biosquid/usr/bin/compalign install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/biosquid/usr/lib/debug/.dwz @@ -1121,45 +1113,45 @@ install -m0755 -d debian/libsquid1t64/DEBIAN dpkg-shlibdeps -Tdebian/libsquid1t64.substvars debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -m0755 -d debian/biosquid/DEBIAN - dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/seqstat + dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/compalign +dpkg-shlibdeps: warning: symbol floor used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol log used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sqrt used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol floor used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol tan used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol log used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1t64/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dh_installdeb install -m0755 -d debian/biosquid/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libsquid1t64/triggers debian/libsquid1t64/DEBIAN/triggers install -m0755 -d debian/libsquid-dev/DEBIAN dh_gencontrol + install -m0755 -d debian/libsquid-dev/DEBIAN + echo misc:Depends= >> debian/libsquid-dev.substvars + echo misc:Pre-Depends= >> debian/libsquid-dev.substvars + dpkg-gencontrol -plibsquid-dev -ldebian/changelog -Tdebian/libsquid-dev.substvars -cdebian/control -Pdebian/libsquid-dev install -m0755 -d debian/biosquid/DEBIAN echo misc:Depends= >> debian/biosquid.substvars echo misc:Pre-Depends= >> debian/biosquid.substvars install -m0755 -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/.debhelper/biosquid/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=biosquid-dbgsym -DDepends="biosquid (= \${binary:Version})" -DDescription="debug symbols for biosquid" -DBuild-Ids="1c514dd07f670e4e5cd3a0659b6894a411b3a0c1 40f5850ea6f56c3246a2907c446ca018c037873f 6adc41c122360f44848814587da506c4ca08d0c0 6d17a6c78b35d682190283785089f5902b3ac674 8b7728d02342cab88f1f1a84f4ea14d6f0c9e1ff 975aa91651a1a692793a24655e7fcae143558d37 9a738b97750351a0631e6d9d88b87d22765b65a7 ae0a9ea9d04b33ab3cd1057b2dce96b0aa0a64dd bc5f0a98c4af4fbc507bbe1911a0a035423badef cd35a3b45190ce6d8febbae38239b85da1a801d2 dc07d98d395ccd7319caefec77eb137bfa2fa2e4 dd30005d71d0da742a841c5d0af595c3a771f45d f5e120cc3178fc74085975a7145a6d67479321ab" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - install -m0755 -d debian/libsquid-dev/DEBIAN - echo misc:Depends= >> debian/libsquid-dev.substvars - echo misc:Pre-Depends= >> debian/libsquid-dev.substvars - dpkg-gencontrol -plibsquid-dev -ldebian/changelog -Tdebian/libsquid-dev.substvars -cdebian/control -Pdebian/libsquid-dev install -m0755 -d debian/libsquid1t64/DEBIAN echo misc:Depends= >> debian/libsquid1t64.substvars echo misc:Pre-Depends= >> debian/libsquid1t64.substvars install -m0755 -d debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/.debhelper/libsquid1t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libsquid1t64-dbgsym -DDepends="libsquid1t64 (= \${binary:Version})" -DDescription="debug symbols for libsquid1t64" -DBuild-Ids=745d2253ea6d90f61335adc261e10d1018d01031 -DSection=debug -UReplaces -UBreaks - chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/control - dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/libsquid1t64 dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined - chmod 0644 -- debian/libsquid-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -cdebian/control -Pdebian/biosquid - chmod 0644 -- debian/libsquid1t64/DEBIAN/control + chmod 0644 -- debian/libsquid-dev/DEBIAN/control + chmod 0644 -- debian/.debhelper/libsquid1t64/dbgsym-root/DEBIAN/control + dpkg-gencontrol -plibsquid1t64 -ldebian/changelog -Tdebian/libsquid1t64.substvars -cdebian/control -Pdebian/libsquid1t64 chmod 0644 -- debian/biosquid/DEBIAN/control + chmod 0644 -- debian/libsquid1t64/DEBIAN/control dh_md5sums - install -m0755 -d debian/libsquid-dev/DEBIAN install -m0755 -d debian/libsquid1t64/DEBIAN install -m0755 -d debian/biosquid/DEBIAN + install -m0755 -d debian/libsquid-dev/DEBIAN cd debian/libsquid1t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/biosquid >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums @@ -1180,8 +1172,8 @@ dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb: building package 'biosquid' in '../biosquid_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'biosquid-dbgsym' in '../biosquid-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. -dpkg-deb: building package 'libsquid1t64' in '../libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid1t64-dbgsym' in '../libsquid1t64-dbgsym_1.9g+cvs20050121-15.1_amd64.deb'. +dpkg-deb: building package 'libsquid1t64' in '../libsquid1t64_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-15.1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo dpkg-genchanges --build=binary -O../biosquid_1.9g+cvs20050121-15.1_amd64.changes @@ -1190,12 +1182,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2254027/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/617771 and its subdirectories -I: Current time: Fri Oct 31 13:18:53 -12 2025 -I: pbuilder-time-stamp: 1761959933 +I: removing directory /srv/workspace/pbuilder/2254027 and its subdirectories +I: Current time: Fri Dec 4 21:44:05 +14 2026 +I: pbuilder-time-stamp: 1796370245 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/biosquid_1.9g+cvs20050121-15.1.diff: 92.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/biosquid_1.9g+cvs20050121-15.1.diff.gz b2/build.log: 87.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 87.9% -- replaced with stdout Sat Nov 1 01:21:08 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_biosquid_forky_amd64_1761960068 + touch /var/log/reproducible-builds/diffoscope_stamp_biosquid_forky_amd64_1761960068 + RESULT=0 + systemd-run '--description=diffoscope on biosquid/1.9g+cvs20050121-15.1 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_19-73494 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o --run-session -c jenkins-reproducible-forky-diffoscope-2d8b3d75-6492-48d4-9da2-36f8fd4c1a38 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/dbd-tmp-dH6Pv71 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/biosquid_1.9g+cvs20050121-15.1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/biosquid_1.9g+cvs20050121-15.1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/biosquid_1.9g+cvs20050121-15.1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b1/biosquid_1.9g+cvs20050121-15.1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b2/biosquid_1.9g+cvs20050121-15.1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_19-73494.service; invocation ID: 0b9cb08af7ab4e7bb68821b58b23eed0 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/biosquid_1.9g+cvs20050121-15.1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/biosquid_1.9g+cvs20050121-15.1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/biosquid_1.9g+cvs20050121-15.1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b1/biosquid_1.9g+cvs20050121-15.1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.4UHAcX4o/b2/biosquid_1.9g+cvs20050121-15.1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 2 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.tar.TarContainer ## command (total time: 0.058s) 0.024s 4 calls xz 0.019s 3 calls diff 0.007s 5 calls cmp 0.007s 5 calls cmp (external) 0.001s 10 calls cmp (internal) ## compare_files (cumulative) (total time: 0.381s) 0.122s 1 call abc.DotChangesFile 0.104s 1 call abc.DebFile 0.090s 1 call abc.XzFile 0.065s 1 call abc.DebDataTarFile ## container_extract (total time: 0.043s) 0.024s 4 calls diffoscope.comparators.xz.XzContainer 0.015s 108 calls diffoscope.comparators.deb.DebTarContainer 0.003s 8 calls diffoscope.comparators.deb.DebContainer 0.001s 2 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.002s) 0.002s 10 calls linediff ## has_same_content_as (total time: 0.008s) 0.006s 5 calls abc.DebFile 0.002s 1 call abc.DebDataTarFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 2 calls abc.XzFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.TextFile 0.000s 1 call abc.DotChangesFile ## main (total time: 0.388s) 0.385s 2 calls outputs 0.003s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.tar.TarContainer ## output (total time: 0.023s) 0.022s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 0.037s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile 0.012s 438 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.006s 142 calls diffoscope.comparators.utils.archive.ArchiveMember 0.004s 270 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.251s) 0.251s 11 calls specialize Finished with result: success Main processes terminated with: code=exited, status=1/FAILURE Service runtime: 631ms CPU time consumed: 610ms Memory peak: 48.5M (swap: 0B) Sat Nov 1 01:21:08 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Nov 1 01:21:08 UTC 2025 E: biosquid failed to build reproducibly in forky on amd64. Sat Nov 1 01:21:08 UTC 2025 I: https://tests.reproducible-builds.org/debian/forky/amd64/biosquid : reproducible ➤ FTBR INSERT 0 1 INSERT 0 1 DELETE 1 [2025-11-01 01:21:09] INFO: Starting at 2025-11-01 01:21:09.356294 [2025-11-01 01:21:09] INFO: Generating the pages of 1 package(s) [2025-11-01 01:21:09] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/biosquid didn't produce a buildlog, even though it has been built. [2025-11-01 01:21:09] INFO: Finished at 2025-11-01 01:21:09.643130, took: 0:00:00.286840 Sat Nov 1 01:21:09 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/biosquid.html [2025-11-01 01:21:09] INFO: Starting at 2025-11-01 01:21:09.945159 [2025-11-01 01:21:10] INFO: Scheduling packages in amd64/forky [2025-11-01 01:21:10] INFO: jenkins scheduled in forky/amd64, reason: 'reproducible ➤ FTBR': biosquid [2025-11-01 01:21:10] INFO: Finished at 2025-11-01 01:21:10.333641, took: 0:00:00.388489 Sat Nov 1 01:21:10 UTC 2025 I: Removing signed biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc files: removed './b1/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc' removed './b2/biosquid_1.9g+cvs20050121-15.1_amd64.buildinfo.asc' 1761960070 amd64 forky biosquid Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/biosquid_1.9g+cvs20050121-15.1.rbuild.log: 86.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/biosquid_1.9g+cvs20050121-15.1.rbuild.log.gz [2025-11-01 01:21:10] INFO: Starting at 2025-11-01 01:21:10.663770 [2025-11-01 01:21:10] INFO: Generating the pages of 1 package(s) [2025-11-01 01:21:10] INFO: Finished at 2025-11-01 01:21:10.942504, took: 0:00:00.278739 All cleanup done. Sat Nov 1 01:21:11 UTC 2025 - total duration: 0h 3m 47s. Sat Nov 1 01:21:11 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-JUPCnDlP, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 3min 49.230s CPU time consumed: 3.874s Memory peak: 60.8M (swap: 0B)