Running as unit: rb-build-amd64_2-32679.service ==================================================================================== Sun Feb 23 02:43:53 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_2) on jenkins, called using "ionos5-amd64 ionos1-amd64" as arguments. Sun Feb 23 02:43:53 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-E1alx5VZ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Feb 23 02:43:53 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Sun Feb 23 02:43:53 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-k3GMq0' Sun Feb 23 02:43:53 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sun Feb 23 02:43:53 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Kzoocj' ok, let's check if seqan-needle is building anywhere yet… ok, seqan-needle is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of seqan-needle in unstable on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Sun Feb 23 02:44:13 UTC 2025 I: starting to build seqan-needle/unstable/amd64 on jenkins on '2025-02-23 02:43' Sun Feb 23 02:44:13 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_2/32679/console.log 1740278653 amd64 unstable seqan-needle Sun Feb 23 02:44:13 UTC 2025 I: Downloading source for unstable/seqan-needle=1.0.3+ds-1 --2025-02-23 02:44:13-- http://deb.debian.org/debian/pool/main/s/seqan-needle/seqan-needle_1.0.3%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2319 (2.3K) [text/prs.lines.tag] Saving to: ‘seqan-needle_1.0.3+ds-1.dsc’ 0K .. 100% 366M=0s 2025-02-23 02:44:13 (366 MB/s) - ‘seqan-needle_1.0.3+ds-1.dsc’ saved [2319/2319] --2025-02-23 02:44:13-- http://deb.debian.org/debian/pool/main/s/seqan-needle/seqan-needle_1.0.3%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2319 (2.3K) [text/prs.lines.tag] Saving to: ‘seqan-needle_1.0.3+ds-1.dsc’ 0K .. 100% 366M=0s 2025-02-23 02:44:13 (366 MB/s) - ‘seqan-needle_1.0.3+ds-1.dsc’ saved [2319/2319] Sun Feb 23 02:44:13 UTC 2025 I: seqan-needle_1.0.3+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-needle Binary: seqan-needle, seqan-needle-doc Architecture: any all Version: 1.0.3+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/needle Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/seqan-needle Vcs-Git: https://salsa.debian.org/med-team/seqan-needle.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, cmake, git, libcereal-dev, libgtest-dev, libseqan3-dev Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkgconf, git, doxygen Package-List: seqan-needle deb science optional arch=any seqan-needle-doc deb doc optional arch=all Checksums-Sha1: 3560c1218bcab7c03a614bc63ac74fe26b24a08a 14656416 seqan-needle_1.0.3+ds.orig.tar.xz 631215f2ca4b9799372fa5cd86618408e90d8528 6296 seqan-needle_1.0.3+ds-1.debian.tar.xz Checksums-Sha256: c26e8be818b237b5d1dd5c04d2f308413d80ab7176521385e4b663e4eb44f75c 14656416 seqan-needle_1.0.3+ds.orig.tar.xz 11002794c7a80c08d26309ab74244809253de5c0c7354f4d30fa58d8adbe2e88 6296 seqan-needle_1.0.3+ds-1.debian.tar.xz Files: 50a8401714f027bb344a49b5ead1acc4 14656416 seqan-needle_1.0.3+ds.orig.tar.xz 8c7ded76b128b4404bedc14d39fafef5 6296 seqan-needle_1.0.3+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmcx9nsACgkQPCZ2P2xn 5uIHxxAAltOK2CfvMOAFA/XzUwd0t7R2SCOXxQpezG19Fyy9Q+5OaIrHmNGPWov2 9sGmZ159YjPsFE6rXtOdABfmnZuCkhXfyhLz78IlBLazm0O4RsuY7LX7w/yB2gmz Ygx286XNmRRd8/UbFLLDtrfJgKqnIp0h7b0o8yz0cAHVmoRTiktSEmointrXu6V7 kbUrV0FG5vM54RF0IstZS30fT6hfxuFa1fJjy1wlN93cqdCuvEih3baeXyuMmUfE /fM3Cn6t853uF7Bszp2ygn8MpGmdu16UldAGpVrh4AkGjAkFW6i4w0JU4EiritMZ vZuxP/r62rDWY1pdj717TW3FMFKT7LyVFcTvJPJwiz4ASbVjV70gkYNR2mgTBRuX JSAK5YM+3kQjk1fNva1YLiDCSbUVeOTa0cuKlKGaZzNyMMVmkH8fXscam7FWI016 cPRLwGOm5hvZPl8b4ACN0KeA3ZG7pfNWVmqz1GYNzQN5kUGSxoC+g8ihUi6EV0nV LfxCn/w12+NAi4MtbmiETQ/H5zjXnX9XWC3ZIWIH9wTP1+nTiuuhpU9Jy08Tduut rRpmppeJmoeqY+YoAxmPutxqVS9JlT7gOxJQ3Il0Evegos6r8apteItE8W4wVlWM x92gph95tGQK/J1mhkCR/Wc8vIBWd5SGVVBXEOXVL/uITEMQNXU= =b6Iq -----END PGP SIGNATURE----- Sun Feb 23 02:44:13 UTC 2025 I: Checking whether the package is not for us Sun Feb 23 02:44:13 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sun Feb 23 02:44:13 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sun Feb 23 02:44:13 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Sun Feb 23 02:44:13 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-luVyxP' ==================================================================================== Sat Mar 28 09:07:14 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 seqan-needle unstable /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N 1.0.3+ds-1" as arguments. Sat Mar 28 09:07:14 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-BLip9lvR" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Mar 28 09:07:14 UTC 2026 I: Downloading source for unstable/seqan-needle=1.0.3+ds-1 Reading package lists... NOTICE: 'seqan-needle' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqan-needle.git Please use: git clone https://salsa.debian.org/med-team/seqan-needle.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.7 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (dsc) [2319 B] Get:2 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (tar) [14.7 MB] Get:3 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (diff) [6296 B] Fetched 14.7 MB in 0s (66.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'seqan-needle' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqan-needle.git Please use: git clone https://salsa.debian.org/med-team/seqan-needle.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.7 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (dsc) [2319 B] Get:2 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (tar) [14.7 MB] Get:3 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (diff) [6296 B] Fetched 14.7 MB in 0s (66.1 MB/s) Download complete and in download only mode ============================================================================= Building seqan-needle in unstable on amd64 on ionos5-amd64 now. Date: Sat Mar 28 09:07:15 UTC 2026 Date UTC: Sat Mar 28 09:07:15 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 21:07:15 -12 2026 I: pbuilder-time-stamp: 1774688835 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.3+ds-1.dsc] I: copying [./seqan-needle_1.0.3+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.3+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.3+ds-1.dsc: unsupported subcommand dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.3+ds dpkg-source: info: unpacking seqan-needle_1.0.3+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.3+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-seqan3 dpkg-source: info: applying privacy dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4049726/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8d60571c7c9d49b09d84cae3be007ddc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4049726' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/pbuilderrc_9qkh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b1 --logfile b1/build.log seqan-needle_1.0.3+ds-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4049726/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkgconf, git, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on git; however: Package git is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} git{a} git-man{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales less libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx openssh-client psmisc publicsuffix wget 0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After unpacking 506 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.2.5 [2272 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 56 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-1+b1 [26.0 MB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libclang-cpp19 amd64 1:19.1.7-1+b1 [13.2 MB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libclang1-19 amd64 1:19.1.7-1+b1 [7614 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-2 [365 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 git-man all 1:2.47.2-0.1 [2205 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 git amd64 1:2.47.2-0.1 [8788 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 googletest all 1.16.0-1 [517 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libseqan3-dev all 3.4.0~rc.3+ds-3 [769 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Fetched 116 MB in 2s (66.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libllvm19:amd64 (1:19.1.7-1+b1) ... Setting up gettext (0.23.1-1) ... Setting up libclang1-19 (1:19.1.7-1+b1) ... Setting up libgtest-dev:amd64 (1.16.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libclang-cpp19 (1:19.1.7-1+b1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libseqan3-dev (3.4.0~rc.3+ds-3) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up doxygen (1.9.8+ds-2.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-2) ... Setting up debhelper (13.24.1) ... Setting up git (1:2.47.2-0.1) ... Setting up cmake (3.31.5-2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan-needle-1.0.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.3+ds-1_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.3+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_configure --arch -- -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.4.0-rc.3 -- Found Git: /usr/bin/git (found version "2.47.2") CMake Deprecation Warning at vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (2.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY SEQAN3_NO_LEMON -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: No configuration needed for the docs I: No configuration needed for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_build --arch -- tests cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" tests VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 tests make[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles 31 make -f CMakeFiles/Makefile2 test/CMakeFiles/tests.dir/all make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp [ 9%] Linking CXX static library ../lib/libneedle_lib.a cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/needle_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_lib.dir/link.txt --verbose=1 "/usr/bin/gcc-ar-14" qc ../lib/libneedle_lib.a CMakeFiles/needle_lib.dir/estimate.cpp.o CMakeFiles/needle_lib.dir/ibf.cpp.o "/usr/bin/gcc-ranlib-14" ../lib/libneedle_lib.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 9%] Built target needle_lib make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 12%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DNEEDLE_DATE=\"2024-11-07\" -DNEEDLE_VERSION=\"1.0.3\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle.dir/main.cpp.o -MF CMakeFiles/needle.dir/main.cpp.o.d -o CMakeFiles/needle.dir/main.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp [ 16%] Linking CXX executable ../bin/needle cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/needle.dir/link.d CMakeFiles/needle.dir/main.cpp.o -o ../bin/needle ../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 16%] Built target needle make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/depend make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/depend make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/depend make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/delete_options_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/count_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/insert_delete_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/estimate_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibf_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibfmin_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/depend make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/minimiser_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/needle_options_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/ibf_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/insert_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/estimate_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 32%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o [ 32%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o [ 32%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o [ 32%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o [ 32%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o [ 38%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -MF CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o.d -o CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/delete_options_test.cpp [ 41%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o [ 41%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -MF CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o.d -o CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/insert_delete_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/count_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/estimate_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibf_test.cpp [ 45%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o [ 48%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o [ 51%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o [ 54%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/minimiser_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/needle_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -MF CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o.d -o CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/insert_options_test.cpp [ 58%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/ibf_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibfmin_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -MF CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o.d -o CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/minimiser_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/estimate_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -MF CMakeFiles/count_options_test.dir/count_options_test.cpp.o.d -o CMakeFiles/count_options_test.dir/count_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/count_options_test.cpp [ 61%] Linking CXX executable ../../needle_options_test [ 64%] Linking CXX executable ../../minimiser_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_options_test.dir/link.txt --verbose=1 cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_options_test.dir/link.txt --verbose=1 [ 67%] Linking CXX executable ../../count_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_options_test.dir/link.txt --verbose=1 [ 70%] Linking CXX executable ../../ibf_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/needle_options_test.dir/link.d CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -o ../../needle_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target needle_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_options_test.dir/link.d CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -o ../../ibf_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target ibf_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_options_test.dir/link.d CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o ../../minimiser_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target minimiser_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_options_test.dir/link.d CMakeFiles/count_options_test.dir/count_options_test.cpp.o -o ../../count_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target count_options_test [ 74%] Linking CXX executable ../../insert_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_options_test.dir/link.txt --verbose=1 [ 77%] Linking CXX executable ../../delete_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/delete_options_test.dir/link.txt --verbose=1 [ 80%] Linking CXX executable ../../count_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_test.dir/link.txt --verbose=1 [ 83%] Linking CXX executable ../../estimate_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 [ 87%] Linking CXX executable ../../estimate_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_options_test.dir/link.txt --verbose=1 [ 90%] Linking CXX executable ../../ibfmin_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 [ 93%] Linking CXX executable ../../insert_delete_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_delete_test.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../../minimiser_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_test.dir/link.txt --verbose=1 [100%] Linking CXX executable ../../ibf_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/delete_options_test.dir/link.d CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -o ../../delete_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target delete_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_options_test.dir/link.d CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -o ../../insert_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target insert_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_options_test.dir/link.d CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -o ../../estimate_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_test.dir/link.d CMakeFiles/count_test.dir/count_test.cpp.o -o ../../count_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target count_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_test.dir/link.d CMakeFiles/estimate_test.dir/estimate_test.cpp.o -o ../../estimate_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibfmin_test.dir/link.d CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ../../ibfmin_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target ibfmin_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_delete_test.dir/link.d CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -o ../../insert_delete_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target insert_delete_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_test.dir/link.d CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ../../ibf_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_test.dir/link.d CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -o ../../minimiser_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target ibf_test [100%] Built target minimiser_test make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/CMakeFiles/tests.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'test/CMakeFiles/tests.dir/build'. make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target tests make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' doxygen doc/doxygen_cfg warning: Tag 'HTML_TIMESTAMP' at line 224 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 260 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 295 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 364 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 365 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 393 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: tag INCLUDE_PATH: include path '${CMAKE_SOURCE_DIR}/include' does not exist warning: source '${CMAKE_SOURCE_DIR}/include' is not a readable file or directory... skipping. Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/include Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Reading /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating file documentation... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2seqan-needle-1_80_83_09ds_2_l_i_c_e_n_s_e... Generating group documentation... Generating class documentation... Generating docs for compound all_arguments... Generating docs for compound estimate_arguments... Generating docs for compound estimate_ibf_arguments... Generating docs for compound min_arguments... Generating docs for compound minimiser_arguments... Generating docs for compound my_traits... Generating docs for compound RandomGenerator... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 125/65536 hits=272 misses=132 symbol lookup cache used 135/65536 hits=345 misses=135 finished... make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules execute_after_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' obj-*/bin/needle --export-help man > debian/needle.1 obj-*/bin/needle count --export-help man > debian/needle-count.1 obj-*/bin/needle estimate --export-help man > debian/needle-estimate.1 obj-*/bin/needle ibf --export-help man > debian/needle-ibf.1 obj-*/bin/needle minimiser --export-help man > debian/needle-minimiser.1 make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: Not running tests for the docs I: Not running tests for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_test -Nseqan-needle-doc cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --output-on-failure --no-tests=error --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: count_test 1: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_test 1: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: insert_delete_test 2: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_delete_test 2: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 2: Test timeout computed to be: 10000000 test 3 Start 3: estimate_test 3: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_test 3: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 3: Test timeout computed to be: 10000000 test 4 Start 4: ibf_test 4: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_test 4: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 4: Test timeout computed to be: 10000000 test 5 Start 5: ibfmin_test 5: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibfmin_test 5: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 5: Test timeout computed to be: 10000000 test 6 Start 6: minimiser_test 6: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_test 6: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 6: Test timeout computed to be: 10000000 test 7 Start 7: needle_options_test 7: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/needle_options_test 7: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 7: Test timeout computed to be: 10000000 test 8 Start 8: ibf_options_test 8: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_options_test 8: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 8: Test timeout computed to be: 10000000 test 9 Start 9: insert_options_test 9: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_options_test 9: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 9: Test timeout computed to be: 10000000 test 10 Start 10: minimiser_options_test 10: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_options_test 10: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 10: Test timeout computed to be: 10000000 test 11 Start 11: estimate_options_test 11: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_options_test 11: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 11: Test timeout computed to be: 10000000 test 12 Start 12: count_options_test 12: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_options_test 12: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 12: Test timeout computed to be: 10000000 test 13 Start 13: delete_options_test 13: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/delete_options_test 13: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 13: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 4 tests from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 4 tests from count_test 1: [ RUN ] count_test.small_example 1: [ OK ] count_test.small_example (1 ms) 1: [ RUN ] count_test.small_example_paired 1: [ OK ] count_test.small_example_paired (1 ms) 1: [ RUN ] count_test.small_example_exclude 1: [ OK ] count_test.small_example_exclude (0 ms) 1: [ RUN ] count_test.genome_small_example 1: [ OK ] count_test.genome_small_example (0 ms) 1: [----------] 4 tests from count_test (4 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 4 tests from 1 test suite ran. (4 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete_test 2: [ RUN ] delete_test.no_given_thresholds 2: [ OK ] delete_test.no_given_thresholds (2 ms) 2: [----------] 1 test from delete_test (2 ms total) 2: 2: [----------] 8 tests from insert_test 2: [ RUN ] insert_test.ibf 2: [ OK ] insert_test.ibf (0 ms) 2: [ RUN ] insert_test.ibf_no_given_thresholds 2: [ OK ] insert_test.ibf_no_given_thresholds (0 ms) 2: [ RUN ] insert_test.ibf_delete 2: [ OK ] insert_test.ibf_delete (1 ms) 2: [ RUN ] insert_test.ibf_delete_no_given_threshold 2: [ OK ] insert_test.ibf_delete_no_given_threshold (2 ms) 2: [ RUN ] insert_test.ibfmin 2: [ OK ] insert_test.ibfmin (0 ms) 2: [ RUN ] insert_test.ibfmin_delete 2: [ OK ] insert_test.ibfmin_delete (1 ms) 2: [ RUN ] insert_test.ibfmin_no_given_thresholds 2: [ OK ] insert_test.ibfmin_no_given_thresholds (0 ms) 2: [ RUN ] insert_test.delete_ibfmin_no_given_thresholds 2: [ OK ] insert_test.delete_ibfmin_no_given_thresholds (3 ms) 2: [----------] 8 tests from insert_test (12 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 9 tests from 2 test suites ran. (14 ms total) 2: [ PASSED ] 9 tests. 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate_test 3: [ RUN ] estimate_test.small_example 3: [ OK ] estimate_test.small_example (2 ms) 3: [ RUN ] estimate_test.small_example_uncompressed 3: [ OK ] estimate_test.small_example_uncompressed (0 ms) 3: [ RUN ] estimate_test.small_example_gene_not_found 3: [ OK ] estimate_test.small_example_gene_not_found (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level 3: [ OK ] estimate_test.small_example_different_expressions_per_level (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1 (1 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed (0 ms) 3: [ RUN ] estimate_test.example 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 8 tests from 1 test suite. 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf_test 4: [ RUN ] ibf_test.given_expression_thresholds 4: [ OK ] ibf_test.given_expression_thresholds (1 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_include_file 4: [ OK ] ibf_test.given_expression_thresholds_include_file (1 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_exclude_file 4: [ OK ] ibf_test.given_expression_thresholds_exclude_file (0 ms) 4: [ RUN ] ibf_test.no_given_expression_thresholds 4: [ OK ] ibf_test.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibf_test.expression_thresholds_by_genome 4: [ OK ] ibf_test.expression_thresholds_by_genome (0 ms) 4: [ RUN ] ibf_test.throws 4: [ OK ] ibf_test.throws (0 ms) 4: [ RUN ] ibf_test.given_cutoffs 4: [ OK ] ibf_test.given_cutoffs (0 ms) 4: [ RUN ] ibf_test.different_file_sizes 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 6 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 6 tests from ibfmin_test 5: [ RUN ] ibfmin_test.given_expression_thresholds 5: [ OK ] ibfmin_test.given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.given_expression_thresholds_multiple_threads (2 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds 5: [ OK ] ibfmin_test.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.expression_thresholds_by_genome 5: [ OK ] ibfmin_test.expression_thresholds_by_genome (1 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.no_given_expression_thresholds_multiple_threads (1 ms) 5: [ RUN ] ibfmin_test.different_shape 5: [ OK ] ibfmin_test.different_shape (1 ms) 5: [----------] 6 tests from ibfmin_test (7 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 6 tests from 1 test suite ran. (7 ms total) 5: [ PASSED ] 6 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 8 tests from minimiser_test 6: [ RUN ] minimiser_test.small_example 6: [ OK ] minimiser_test.small_example (2 ms) 6: [ RUN ] minimiser_test.small_example_different_shape 6: [ OK ] minimiser_test.small_example_different_shape (0 ms) 6: [ RUN ] minimiser_test.small_example_samplewise 6: [ OK ] minimiser_test.small_example_samplewise (0 ms) 6: [ RUN ] minimiser_test.cutoff_by_filesize 6: [ OK ] minimiser_test.cutoff_by_filesize (0 ms) 6: [ RUN ] minimiser_test.small_example_two_threads 6: [ OK ] minimiser_test.small_example_two_threads (1 ms) 6: [ RUN ] minimiser_test.small_example_include 6: [ OK ] minimiser_test.small_example_include (0 ms) 6: [ RUN ] minimiser_test.small_example_exclude 6: [ OK ] minimiser_test.small_example_exclude (0 ms) 6: [ RUN ] minimiser_test.small_example_shape 6: [ OK ] minimiser_test.small_example_shape (0 ms) 6: [----------] 8 tests from minimiser_test (6 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 8 tests from 1 test suite ran. (6 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options 7: [ OK ] needle_options_test.no_options (3 ms) 7: [ RUN ] needle_options_test.fail_no_argument 7: [ OK ] needle_options_test.fail_no_argument (3 ms) 7: [----------] 2 tests from needle_options_test (6 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 2 tests from 1 test suite ran. (6 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options 8: [ OK ] ibf_options_test.ibf_no_options (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument 8: [ OK ] ibf_options_test.ibf_fail_no_argument (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options 9: [ OK ] insert_options_test.insert_no_options (3 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options 10: [ OK ] minimiser_options_test.no_options (3 ms) 10: [ RUN ] minimiser_options_test.fail_no_argument 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. 11: [----------] Global test environment set-up. 11: [----------] 5 tests from estimate_options_test 11: [ RUN ] estimate_options_test.no_options 12: Running main() from ./googletest/src/gtest_main.cc 12: [==========] Running 8 tests from 2 test suites. 12: [----------] Global test environment set-up. 12: [----------] 5 tests from count_options_test 12: [ RUN ] count_options_test.no_options 1/13 Test #1: count_test ....................... Passed 0.02 sec 2/13 Test #2: insert_delete_test ............... Passed 0.02 sec 3/13 Test #5: ibfmin_test ...................... Passed 0.02 sec 4/13 Test #6: minimiser_test ................... Passed 0.01 sec 5/13 Test #7: needle_options_test .............. Passed 0.01 sec 11: [ OK ] estimate_options_test.no_options (3 ms) 11: [ RUN ] estimate_options_test.fail_no_argument 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options 9: [ OK ] insert_options_test.insert_fail_no_argument (3 ms) 9: [ RUN ] insert_options_test.with_argument 12: [ OK ] count_options_test.no_options (3 ms) 12: [ RUN ] count_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.fail_no_argument (3 ms) 10: [ RUN ] minimiser_options_test.with_arguments 8: [ OK ] ibf_options_test.ibf_fail_contradiction (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 13: [ OK ] delete_options_test.delete_no_options (3 ms) 13: [ RUN ] delete_options_test.with_argument 11: [ OK ] estimate_options_test.fail_no_argument (3 ms) 11: [ RUN ] estimate_options_test.with_argument 12: [ OK ] count_options_test.fail_no_argument (3 ms) 12: [ RUN ] count_options_test.with_arguments 10: [ OK ] minimiser_options_test.with_arguments (4 ms) 10: [ RUN ] minimiser_options_test.cutoff 8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (4 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_fpr 12: [ OK ] count_options_test.with_arguments (5 ms) 12: [ RUN ] count_options_test.multithreads 8: [ OK ] ibf_options_test.ibf_fail_no_fpr (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs 10: [ OK ] minimiser_options_test.cutoff (4 ms) 10: [ RUN ] minimiser_options_test.multiple_sample 8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (3 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument 12: [ OK ] count_options_test.multithreads (5 ms) 12: [ RUN ] count_options_test.paired 10: [ OK ] minimiser_options_test.multiple_sample (5 ms) 10: [ RUN ] minimiser_options_test.multithreads 10: [ OK ] minimiser_options_test.multithreads (4 ms) 10: [ RUN ] minimiser_options_test.paired 12: [ OK ] count_options_test.paired (6 ms) 12: [----------] 5 tests from count_options_test (24 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options 12: [ OK ] genome_options_test.no_options (3 ms) 12: [ RUN ] genome_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.paired (5 ms) 10: [ RUN ] minimiser_options_test.invalid_argument 12: [ OK ] genome_options_test.fail_no_argument (3 ms) 12: [ RUN ] genome_options_test.with_arguments 10: [ OK ] minimiser_options_test.invalid_argument (3 ms) 10: [----------] 8 tests from minimiser_options_test (35 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 8 tests from 1 test suite ran. (35 ms total) 10: [ PASSED ] 8 tests. 6/13 Test #10: minimiser_options_test ........... Passed 0.04 sec 12: [ OK ] genome_options_test.with_arguments (4 ms) 12: [----------] 3 tests from genome_options_test (11 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 8 tests from 2 test suites ran. (35 ms total) 12: [ PASSED ] 8 tests. 7/13 Test #12: count_options_test ............... Passed 0.04 sec 4: [ OK ] ibf_test.different_file_sizes (1716 ms) 4: [----------] 8 tests from ibf_test (1720 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 8 tests from 1 test suite ran. (1720 ms total) 4: [ PASSED ] 8 tests. 8/13 Test #4: ibf_test ......................... Passed 1.72 sec 8: [ OK ] ibf_options_test.ibf_with_argument (2240 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_options 3: [ OK ] estimate_test.example (2679 ms) 3: [ RUN ] estimate_test.example_multiple_threads 11: [ OK ] estimate_options_test.with_argument (3786 ms) 11: [ RUN ] estimate_options_test.with_argument_normalization_method 9: [ OK ] insert_options_test.with_argument (4113 ms) 9: [----------] 3 tests from insert_options_test (4120 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 3 tests from 1 test suite ran. (4121 ms total) 9: [ PASSED ] 3 tests. 9/13 Test #9: insert_options_test .............. Passed 4.12 sec 8: [ OK ] ibf_options_test.ibf_with_argument_with_options (3041 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape 3: [ OK ] estimate_test.example_multiple_threads (3042 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level 3: [ OK ] estimate_test.example_different_expressions_per_level (1131 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level_multiple_threads 3: [ OK ] estimate_test.example_different_expressions_per_level_multiple_threads (1125 ms) 3: [----------] 10 tests from estimate_test (7985 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 10 tests from 1 test suite ran. (7985 ms total) 3: [ PASSED ] 10 tests. 10/13 Test #3: estimate_test .................... Passed 7.99 sec 13: [ OK ] delete_options_test.with_argument (11458 ms) 13: [----------] 2 tests from delete_options_test (11462 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 2 tests from 1 test suite ran. (11462 ms total) 13: [ PASSED ] 2 tests. 11/13 Test #13: delete_options_test .............. Passed 11.47 sec 11: [ OK ] estimate_options_test.with_argument_normalization_method (25538 ms) 11: [ RUN ] estimate_options_test.with_argument_out 8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (36100 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options 8: [ OK ] ibf_options_test.ibfmin_no_options (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument 8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr 8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs 8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument 8: [ OK ] ibf_options_test.ibfmin_with_argument (3 ms) 8: [ RUN ] ibf_options_test.compressed 8: [ OK ] ibf_options_test.compressed (3 ms) 8: [ RUN ] ibf_options_test.more_hash_functions 8: [ OK ] ibf_options_test.more_hash_functions (3 ms) 8: [ RUN ] ibf_options_test.expression_thresholds 8: [ OK ] ibf_options_test.expression_thresholds (3 ms) 8: [----------] 19 tests from ibf_options_test (41443 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 19 tests from 1 test suite ran. (41443 ms total) 8: [ PASSED ] 19 tests. 12/13 Test #8: ibf_options_test ................. Passed 41.45 sec 11: [ OK ] estimate_options_test.with_argument_out (39650 ms) 11: [----------] 5 tests from estimate_options_test (68984 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 5 tests from 1 test suite ran. (68984 ms total) 11: [ PASSED ] 5 tests. 13/13 Test #11: estimate_options_test ............ Passed 68.99 sec 100% tests passed, 0 tests failed out of 13 Total Test time (real) = 69.00 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' rm -Rf obj-*/test make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/seqan-needle-1.0.3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.4.0-rc.3 CMake Deprecation Warning at vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/seqan-needle-1.0.3+ds/debian/tmp/usr/bin/needle make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.3+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4049726 and its subdirectories I: Current time: Fri Mar 27 21:10:46 -12 2026 I: pbuilder-time-stamp: 1774689046 Sat Mar 28 09:10:46 UTC 2026 I: Signing ./b1/seqan-needle_1.0.3+ds-1_amd64.buildinfo as seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc Sat Mar 28 09:10:46 UTC 2026 I: Signed ./b1/seqan-needle_1.0.3+ds-1_amd64.buildinfo as ./b1/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc Sat Mar 28 09:10:46 UTC 2026 - build #1 for seqan-needle/unstable/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Sat Mar 28 09:10:46 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-BLip9lvR, removing. /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 23 02:47 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 23 02:44 b2 -rw------- 1 jenkins jenkins 3470 Feb 23 02:44 rbuildlog.gvLREGr -rw-r--r-- 1 jenkins jenkins 2319 Nov 12 10:01 seqan-needle_1.0.3+ds-1.dsc /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b1: total 20264 -rw-r--r-- 1 jenkins jenkins 127578 Feb 23 02:47 build.log -rw-r--r-- 1 jenkins jenkins 5445592 Feb 23 02:47 seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 116208 Feb 23 02:47 seqan-needle-doc_1.0.3+ds-1_all.deb -rw-r--r-- 1 jenkins jenkins 6296 Feb 23 02:47 seqan-needle_1.0.3+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2319 Feb 23 02:47 seqan-needle_1.0.3+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 7034 Feb 23 02:47 seqan-needle_1.0.3+ds-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7916 Feb 23 02:47 seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2017 Feb 23 02:47 seqan-needle_1.0.3+ds-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 354920 Feb 23 02:47 seqan-needle_1.0.3+ds-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1756 Feb 23 02:47 seqan-needle_1.0.3+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 14656416 Feb 23 02:47 seqan-needle_1.0.3+ds.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b2: total 0 Sun Feb 23 02:47:47 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 21:07:15 -12 2026 I: pbuilder-time-stamp: 1774688835 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.3+ds-1.dsc] I: copying [./seqan-needle_1.0.3+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.3+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.3+ds-1.dsc: unsupported subcommand dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.3+ds dpkg-source: info: unpacking seqan-needle_1.0.3+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.3+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-seqan3 dpkg-source: info: applying privacy dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4049726/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8d60571c7c9d49b09d84cae3be007ddc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4049726' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/pbuilderrc_9qkh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b1 --logfile b1/build.log seqan-needle_1.0.3+ds-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4049726/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkgconf, git, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on git; however: Package git is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} git{a} git-man{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales less libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx openssh-client psmisc publicsuffix wget 0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After unpacking 506 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.2.5 [2272 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 56 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-1+b1 [26.0 MB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libclang-cpp19 amd64 1:19.1.7-1+b1 [13.2 MB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libclang1-19 amd64 1:19.1.7-1+b1 [7614 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-2 [365 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 git-man all 1:2.47.2-0.1 [2205 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 git amd64 1:2.47.2-0.1 [8788 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 googletest all 1.16.0-1 [517 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libseqan3-dev all 3.4.0~rc.3+ds-3 [769 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Fetched 116 MB in 2s (66.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libllvm19:amd64 (1:19.1.7-1+b1) ... Setting up gettext (0.23.1-1) ... Setting up libclang1-19 (1:19.1.7-1+b1) ... Setting up libgtest-dev:amd64 (1.16.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libclang-cpp19 (1:19.1.7-1+b1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libseqan3-dev (3.4.0~rc.3+ds-3) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up doxygen (1.9.8+ds-2.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-2) ... Setting up debhelper (13.24.1) ... Setting up git (1:2.47.2-0.1) ... Setting up cmake (3.31.5-2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan-needle-1.0.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.3+ds-1_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.3+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_configure --arch -- -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.4.0-rc.3 -- Found Git: /usr/bin/git (found version "2.47.2") CMake Deprecation Warning at vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (2.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY SEQAN3_NO_LEMON -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: No configuration needed for the docs I: No configuration needed for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_build --arch -- tests cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" tests VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 tests make[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles 31 make -f CMakeFiles/Makefile2 test/CMakeFiles/tests.dir/all make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp [ 9%] Linking CXX static library ../lib/libneedle_lib.a cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/needle_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_lib.dir/link.txt --verbose=1 "/usr/bin/gcc-ar-14" qc ../lib/libneedle_lib.a CMakeFiles/needle_lib.dir/estimate.cpp.o CMakeFiles/needle_lib.dir/ibf.cpp.o "/usr/bin/gcc-ranlib-14" ../lib/libneedle_lib.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 9%] Built target needle_lib make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 12%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DNEEDLE_DATE=\"2024-11-07\" -DNEEDLE_VERSION=\"1.0.3\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle.dir/main.cpp.o -MF CMakeFiles/needle.dir/main.cpp.o.d -o CMakeFiles/needle.dir/main.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp [ 16%] Linking CXX executable ../bin/needle cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/needle.dir/link.d CMakeFiles/needle.dir/main.cpp.o -o ../bin/needle ../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 16%] Built target needle make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/depend make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/depend make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/depend make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/delete_options_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/count_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/insert_delete_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/estimate_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibf_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibfmin_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/depend make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/minimiser_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/needle_options_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/ibf_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/insert_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/estimate_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 32%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o [ 32%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o [ 32%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o [ 32%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o [ 32%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o [ 38%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -MF CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o.d -o CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/delete_options_test.cpp [ 41%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o [ 41%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -MF CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o.d -o CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/insert_delete_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/count_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/estimate_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibf_test.cpp [ 45%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o [ 48%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o [ 51%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o [ 54%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/minimiser_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/needle_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -MF CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o.d -o CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/insert_options_test.cpp [ 58%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/ibf_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibfmin_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -MF CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o.d -o CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/minimiser_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/estimate_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -MF CMakeFiles/count_options_test.dir/count_options_test.cpp.o.d -o CMakeFiles/count_options_test.dir/count_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/count_options_test.cpp [ 61%] Linking CXX executable ../../needle_options_test [ 64%] Linking CXX executable ../../minimiser_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_options_test.dir/link.txt --verbose=1 cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_options_test.dir/link.txt --verbose=1 [ 67%] Linking CXX executable ../../count_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_options_test.dir/link.txt --verbose=1 [ 70%] Linking CXX executable ../../ibf_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/needle_options_test.dir/link.d CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -o ../../needle_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target needle_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_options_test.dir/link.d CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -o ../../ibf_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target ibf_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_options_test.dir/link.d CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o ../../minimiser_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target minimiser_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_options_test.dir/link.d CMakeFiles/count_options_test.dir/count_options_test.cpp.o -o ../../count_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target count_options_test [ 74%] Linking CXX executable ../../insert_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_options_test.dir/link.txt --verbose=1 [ 77%] Linking CXX executable ../../delete_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/delete_options_test.dir/link.txt --verbose=1 [ 80%] Linking CXX executable ../../count_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_test.dir/link.txt --verbose=1 [ 83%] Linking CXX executable ../../estimate_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 [ 87%] Linking CXX executable ../../estimate_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_options_test.dir/link.txt --verbose=1 [ 90%] Linking CXX executable ../../ibfmin_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 [ 93%] Linking CXX executable ../../insert_delete_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_delete_test.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../../minimiser_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_test.dir/link.txt --verbose=1 [100%] Linking CXX executable ../../ibf_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/delete_options_test.dir/link.d CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -o ../../delete_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target delete_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_options_test.dir/link.d CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -o ../../insert_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target insert_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_options_test.dir/link.d CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -o ../../estimate_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_test.dir/link.d CMakeFiles/count_test.dir/count_test.cpp.o -o ../../count_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target count_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_test.dir/link.d CMakeFiles/estimate_test.dir/estimate_test.cpp.o -o ../../estimate_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibfmin_test.dir/link.d CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ../../ibfmin_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target ibfmin_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_delete_test.dir/link.d CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -o ../../insert_delete_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target insert_delete_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_test.dir/link.d CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ../../ibf_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_test.dir/link.d CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -o ../../minimiser_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target ibf_test [100%] Built target minimiser_test make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/CMakeFiles/tests.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'test/CMakeFiles/tests.dir/build'. make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target tests make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' doxygen doc/doxygen_cfg warning: Tag 'HTML_TIMESTAMP' at line 224 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 260 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 295 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 364 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 365 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 393 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: tag INCLUDE_PATH: include path '${CMAKE_SOURCE_DIR}/include' does not exist warning: source '${CMAKE_SOURCE_DIR}/include' is not a readable file or directory... skipping. Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/include Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Reading /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating file documentation... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2seqan-needle-1_80_83_09ds_2_l_i_c_e_n_s_e... Generating group documentation... Generating class documentation... Generating docs for compound all_arguments... Generating docs for compound estimate_arguments... Generating docs for compound estimate_ibf_arguments... Generating docs for compound min_arguments... Generating docs for compound minimiser_arguments... Generating docs for compound my_traits... Generating docs for compound RandomGenerator... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 125/65536 hits=272 misses=132 symbol lookup cache used 135/65536 hits=345 misses=135 finished... make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules execute_after_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' obj-*/bin/needle --export-help man > debian/needle.1 obj-*/bin/needle count --export-help man > debian/needle-count.1 obj-*/bin/needle estimate --export-help man > debian/needle-estimate.1 obj-*/bin/needle ibf --export-help man > debian/needle-ibf.1 obj-*/bin/needle minimiser --export-help man > debian/needle-minimiser.1 make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: Not running tests for the docs I: Not running tests for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_test -Nseqan-needle-doc cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --output-on-failure --no-tests=error --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: count_test 1: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_test 1: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: insert_delete_test 2: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_delete_test 2: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 2: Test timeout computed to be: 10000000 test 3 Start 3: estimate_test 3: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_test 3: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 3: Test timeout computed to be: 10000000 test 4 Start 4: ibf_test 4: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_test 4: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 4: Test timeout computed to be: 10000000 test 5 Start 5: ibfmin_test 5: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibfmin_test 5: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 5: Test timeout computed to be: 10000000 test 6 Start 6: minimiser_test 6: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_test 6: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 6: Test timeout computed to be: 10000000 test 7 Start 7: needle_options_test 7: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/needle_options_test 7: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 7: Test timeout computed to be: 10000000 test 8 Start 8: ibf_options_test 8: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_options_test 8: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 8: Test timeout computed to be: 10000000 test 9 Start 9: insert_options_test 9: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_options_test 9: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 9: Test timeout computed to be: 10000000 test 10 Start 10: minimiser_options_test 10: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_options_test 10: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 10: Test timeout computed to be: 10000000 test 11 Start 11: estimate_options_test 11: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_options_test 11: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 11: Test timeout computed to be: 10000000 test 12 Start 12: count_options_test 12: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_options_test 12: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 12: Test timeout computed to be: 10000000 test 13 Start 13: delete_options_test 13: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/delete_options_test 13: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 13: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 4 tests from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 4 tests from count_test 1: [ RUN ] count_test.small_example 1: [ OK ] count_test.small_example (1 ms) 1: [ RUN ] count_test.small_example_paired 1: [ OK ] count_test.small_example_paired (1 ms) 1: [ RUN ] count_test.small_example_exclude 1: [ OK ] count_test.small_example_exclude (0 ms) 1: [ RUN ] count_test.genome_small_example 1: [ OK ] count_test.genome_small_example (0 ms) 1: [----------] 4 tests from count_test (4 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 4 tests from 1 test suite ran. (4 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete_test 2: [ RUN ] delete_test.no_given_thresholds 2: [ OK ] delete_test.no_given_thresholds (2 ms) 2: [----------] 1 test from delete_test (2 ms total) 2: 2: [----------] 8 tests from insert_test 2: [ RUN ] insert_test.ibf 2: [ OK ] insert_test.ibf (0 ms) 2: [ RUN ] insert_test.ibf_no_given_thresholds 2: [ OK ] insert_test.ibf_no_given_thresholds (0 ms) 2: [ RUN ] insert_test.ibf_delete 2: [ OK ] insert_test.ibf_delete (1 ms) 2: [ RUN ] insert_test.ibf_delete_no_given_threshold 2: [ OK ] insert_test.ibf_delete_no_given_threshold (2 ms) 2: [ RUN ] insert_test.ibfmin 2: [ OK ] insert_test.ibfmin (0 ms) 2: [ RUN ] insert_test.ibfmin_delete 2: [ OK ] insert_test.ibfmin_delete (1 ms) 2: [ RUN ] insert_test.ibfmin_no_given_thresholds 2: [ OK ] insert_test.ibfmin_no_given_thresholds (0 ms) 2: [ RUN ] insert_test.delete_ibfmin_no_given_thresholds 2: [ OK ] insert_test.delete_ibfmin_no_given_thresholds (3 ms) 2: [----------] 8 tests from insert_test (12 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 9 tests from 2 test suites ran. (14 ms total) 2: [ PASSED ] 9 tests. 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate_test 3: [ RUN ] estimate_test.small_example 3: [ OK ] estimate_test.small_example (2 ms) 3: [ RUN ] estimate_test.small_example_uncompressed 3: [ OK ] estimate_test.small_example_uncompressed (0 ms) 3: [ RUN ] estimate_test.small_example_gene_not_found 3: [ OK ] estimate_test.small_example_gene_not_found (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level 3: [ OK ] estimate_test.small_example_different_expressions_per_level (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1 (1 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed (0 ms) 3: [ RUN ] estimate_test.example 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 8 tests from 1 test suite. 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf_test 4: [ RUN ] ibf_test.given_expression_thresholds 4: [ OK ] ibf_test.given_expression_thresholds (1 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_include_file 4: [ OK ] ibf_test.given_expression_thresholds_include_file (1 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_exclude_file 4: [ OK ] ibf_test.given_expression_thresholds_exclude_file (0 ms) 4: [ RUN ] ibf_test.no_given_expression_thresholds 4: [ OK ] ibf_test.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibf_test.expression_thresholds_by_genome 4: [ OK ] ibf_test.expression_thresholds_by_genome (0 ms) 4: [ RUN ] ibf_test.throws 4: [ OK ] ibf_test.throws (0 ms) 4: [ RUN ] ibf_test.given_cutoffs 4: [ OK ] ibf_test.given_cutoffs (0 ms) 4: [ RUN ] ibf_test.different_file_sizes 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 6 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 6 tests from ibfmin_test 5: [ RUN ] ibfmin_test.given_expression_thresholds 5: [ OK ] ibfmin_test.given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.given_expression_thresholds_multiple_threads (2 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds 5: [ OK ] ibfmin_test.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.expression_thresholds_by_genome 5: [ OK ] ibfmin_test.expression_thresholds_by_genome (1 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.no_given_expression_thresholds_multiple_threads (1 ms) 5: [ RUN ] ibfmin_test.different_shape 5: [ OK ] ibfmin_test.different_shape (1 ms) 5: [----------] 6 tests from ibfmin_test (7 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 6 tests from 1 test suite ran. (7 ms total) 5: [ PASSED ] 6 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 8 tests from minimiser_test 6: [ RUN ] minimiser_test.small_example 6: [ OK ] minimiser_test.small_example (2 ms) 6: [ RUN ] minimiser_test.small_example_different_shape 6: [ OK ] minimiser_test.small_example_different_shape (0 ms) 6: [ RUN ] minimiser_test.small_example_samplewise 6: [ OK ] minimiser_test.small_example_samplewise (0 ms) 6: [ RUN ] minimiser_test.cutoff_by_filesize 6: [ OK ] minimiser_test.cutoff_by_filesize (0 ms) 6: [ RUN ] minimiser_test.small_example_two_threads 6: [ OK ] minimiser_test.small_example_two_threads (1 ms) 6: [ RUN ] minimiser_test.small_example_include 6: [ OK ] minimiser_test.small_example_include (0 ms) 6: [ RUN ] minimiser_test.small_example_exclude 6: [ OK ] minimiser_test.small_example_exclude (0 ms) 6: [ RUN ] minimiser_test.small_example_shape 6: [ OK ] minimiser_test.small_example_shape (0 ms) 6: [----------] 8 tests from minimiser_test (6 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 8 tests from 1 test suite ran. (6 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options 7: [ OK ] needle_options_test.no_options (3 ms) 7: [ RUN ] needle_options_test.fail_no_argument 7: [ OK ] needle_options_test.fail_no_argument (3 ms) 7: [----------] 2 tests from needle_options_test (6 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 2 tests from 1 test suite ran. (6 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options 8: [ OK ] ibf_options_test.ibf_no_options (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument 8: [ OK ] ibf_options_test.ibf_fail_no_argument (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options 9: [ OK ] insert_options_test.insert_no_options (3 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options 10: [ OK ] minimiser_options_test.no_options (3 ms) 10: [ RUN ] minimiser_options_test.fail_no_argument 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. 11: [----------] Global test environment set-up. 11: [----------] 5 tests from estimate_options_test 11: [ RUN ] estimate_options_test.no_options 12: Running main() from ./googletest/src/gtest_main.cc 12: [==========] Running 8 tests from 2 test suites. 12: [----------] Global test environment set-up. 12: [----------] 5 tests from count_options_test 12: [ RUN ] count_options_test.no_options 1/13 Test #1: count_test ....................... Passed 0.02 sec 2/13 Test #2: insert_delete_test ............... Passed 0.02 sec 3/13 Test #5: ibfmin_test ...................... Passed 0.02 sec 4/13 Test #6: minimiser_test ................... Passed 0.01 sec 5/13 Test #7: needle_options_test .............. Passed 0.01 sec 11: [ OK ] estimate_options_test.no_options (3 ms) 11: [ RUN ] estimate_options_test.fail_no_argument 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options 9: [ OK ] insert_options_test.insert_fail_no_argument (3 ms) 9: [ RUN ] insert_options_test.with_argument 12: [ OK ] count_options_test.no_options (3 ms) 12: [ RUN ] count_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.fail_no_argument (3 ms) 10: [ RUN ] minimiser_options_test.with_arguments 8: [ OK ] ibf_options_test.ibf_fail_contradiction (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 13: [ OK ] delete_options_test.delete_no_options (3 ms) 13: [ RUN ] delete_options_test.with_argument 11: [ OK ] estimate_options_test.fail_no_argument (3 ms) 11: [ RUN ] estimate_options_test.with_argument 12: [ OK ] count_options_test.fail_no_argument (3 ms) 12: [ RUN ] count_options_test.with_arguments 10: [ OK ] minimiser_options_test.with_arguments (4 ms) 10: [ RUN ] minimiser_options_test.cutoff 8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (4 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_fpr 12: [ OK ] count_options_test.with_arguments (5 ms) 12: [ RUN ] count_options_test.multithreads 8: [ OK ] ibf_options_test.ibf_fail_no_fpr (3 ms) 8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs 10: [ OK ] minimiser_options_test.cutoff (4 ms) 10: [ RUN ] minimiser_options_test.multiple_sample 8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (3 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument 12: [ OK ] count_options_test.multithreads (5 ms) 12: [ RUN ] count_options_test.paired 10: [ OK ] minimiser_options_test.multiple_sample (5 ms) 10: [ RUN ] minimiser_options_test.multithreads 10: [ OK ] minimiser_options_test.multithreads (4 ms) 10: [ RUN ] minimiser_options_test.paired 12: [ OK ] count_options_test.paired (6 ms) 12: [----------] 5 tests from count_options_test (24 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options 12: [ OK ] genome_options_test.no_options (3 ms) 12: [ RUN ] genome_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.paired (5 ms) 10: [ RUN ] minimiser_options_test.invalid_argument 12: [ OK ] genome_options_test.fail_no_argument (3 ms) 12: [ RUN ] genome_options_test.with_arguments 10: [ OK ] minimiser_options_test.invalid_argument (3 ms) 10: [----------] 8 tests from minimiser_options_test (35 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 8 tests from 1 test suite ran. (35 ms total) 10: [ PASSED ] 8 tests. 6/13 Test #10: minimiser_options_test ........... Passed 0.04 sec 12: [ OK ] genome_options_test.with_arguments (4 ms) 12: [----------] 3 tests from genome_options_test (11 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 8 tests from 2 test suites ran. (35 ms total) 12: [ PASSED ] 8 tests. 7/13 Test #12: count_options_test ............... Passed 0.04 sec 4: [ OK ] ibf_test.different_file_sizes (1716 ms) 4: [----------] 8 tests from ibf_test (1720 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 8 tests from 1 test suite ran. (1720 ms total) 4: [ PASSED ] 8 tests. 8/13 Test #4: ibf_test ......................... Passed 1.72 sec 8: [ OK ] ibf_options_test.ibf_with_argument (2240 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_options 3: [ OK ] estimate_test.example (2679 ms) 3: [ RUN ] estimate_test.example_multiple_threads 11: [ OK ] estimate_options_test.with_argument (3786 ms) 11: [ RUN ] estimate_options_test.with_argument_normalization_method 9: [ OK ] insert_options_test.with_argument (4113 ms) 9: [----------] 3 tests from insert_options_test (4120 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 3 tests from 1 test suite ran. (4121 ms total) 9: [ PASSED ] 3 tests. 9/13 Test #9: insert_options_test .............. Passed 4.12 sec 8: [ OK ] ibf_options_test.ibf_with_argument_with_options (3041 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape 3: [ OK ] estimate_test.example_multiple_threads (3042 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level 3: [ OK ] estimate_test.example_different_expressions_per_level (1131 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level_multiple_threads 3: [ OK ] estimate_test.example_different_expressions_per_level_multiple_threads (1125 ms) 3: [----------] 10 tests from estimate_test (7985 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 10 tests from 1 test suite ran. (7985 ms total) 3: [ PASSED ] 10 tests. 10/13 Test #3: estimate_test .................... Passed 7.99 sec 13: [ OK ] delete_options_test.with_argument (11458 ms) 13: [----------] 2 tests from delete_options_test (11462 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 2 tests from 1 test suite ran. (11462 ms total) 13: [ PASSED ] 2 tests. 11/13 Test #13: delete_options_test .............. Passed 11.47 sec 11: [ OK ] estimate_options_test.with_argument_normalization_method (25538 ms) 11: [ RUN ] estimate_options_test.with_argument_out 8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (36100 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options 8: [ OK ] ibf_options_test.ibfmin_no_options (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument 8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (4 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr 8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs 8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (3 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument 8: [ OK ] ibf_options_test.ibfmin_with_argument (3 ms) 8: [ RUN ] ibf_options_test.compressed 8: [ OK ] ibf_options_test.compressed (3 ms) 8: [ RUN ] ibf_options_test.more_hash_functions 8: [ OK ] ibf_options_test.more_hash_functions (3 ms) 8: [ RUN ] ibf_options_test.expression_thresholds 8: [ OK ] ibf_options_test.expression_thresholds (3 ms) 8: [----------] 19 tests from ibf_options_test (41443 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 19 tests from 1 test suite ran. (41443 ms total) 8: [ PASSED ] 19 tests. 12/13 Test #8: ibf_options_test ................. Passed 41.45 sec 11: [ OK ] estimate_options_test.with_argument_out (39650 ms) 11: [----------] 5 tests from estimate_options_test (68984 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 5 tests from 1 test suite ran. (68984 ms total) 11: [ PASSED ] 5 tests. 13/13 Test #11: estimate_options_test ............ Passed 68.99 sec 100% tests passed, 0 tests failed out of 13 Total Test time (real) = 69.00 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' rm -Rf obj-*/test make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/seqan-needle-1.0.3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.4.0-rc.3 CMake Deprecation Warning at vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/seqan-needle-1.0.3+ds/debian/tmp/usr/bin/needle make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.3+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4049726 and its subdirectories I: Current time: Fri Mar 27 21:10:46 -12 2026 I: pbuilder-time-stamp: 1774689046 Sun Feb 23 02:47:48 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sun Feb 23 02:47:48 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sun Feb 23 02:47:48 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sun Feb 23 02:47:48 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-X80Arp' ==================================================================================== Sun Feb 23 02:47:49 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "2 seqan-needle unstable /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N 1.0.3+ds-1" as arguments. Sun Feb 23 02:47:49 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-6DCOmJh7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Feb 23 02:47:49 UTC 2025 I: Downloading source for unstable/seqan-needle=1.0.3+ds-1 Reading package lists... NOTICE: 'seqan-needle' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqan-needle.git Please use: git clone https://salsa.debian.org/med-team/seqan-needle.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.7 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (dsc) [2319 B] Get:2 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (tar) [14.7 MB] Get:3 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (diff) [6296 B] Fetched 14.7 MB in 0s (60.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'seqan-needle' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqan-needle.git Please use: git clone https://salsa.debian.org/med-team/seqan-needle.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.7 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (dsc) [2319 B] Get:2 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (tar) [14.7 MB] Get:3 http://deb.debian.org/debian unstable/main seqan-needle 1.0.3+ds-1 (diff) [6296 B] Fetched 14.7 MB in 0s (60.0 MB/s) Download complete and in download only mode ============================================================================= Re-Building seqan-needle in unstable on amd64 on ionos1-amd64 now. Date: Sun Feb 23 02:47:50 UTC 2025 Date UTC: Sun Feb 23 02:47:50 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/pbuilderrc_SMhZ + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' seqan-needle = debian-installer -o seqan-needle = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' seqan-needle = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/pbuilderrc_SMhZ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b2 --logfile b2/build.log seqan-needle_1.0.3+ds-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 23 16:47:51 +14 2025 I: pbuilder-time-stamp: 1740278871 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.3+ds-1.dsc] I: copying [./seqan-needle_1.0.3+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.3+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.3+ds-1.dsc: unsupported subcommand dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.3+ds dpkg-source: info: unpacking seqan-needle_1.0.3+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.3+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-seqan3 dpkg-source: info: applying privacy dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/58407/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 23 02:48 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/58407/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/58407/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=7825caa1cc924b658cc5a78bb309d91c LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=58407 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/pbuilderrc_SMhZ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b2 --logfile b2/build.log seqan-needle_1.0.3+ds-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/58407/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkgconf, git, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on git; however: Package git is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} git{a} git-man{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales less libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx openssh-client psmisc publicsuffix wget 0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After unpacking 506 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.2.5 [2272 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.5-2 [2267 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.5-2 [12.0 MB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 56 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-1+b1 [26.0 MB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libclang-cpp19 amd64 1:19.1.7-1+b1 [13.2 MB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libclang1-19 amd64 1:19.1.7-1+b1 [7614 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-2 [365 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 git-man all 1:2.47.2-0.1 [2205 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 git amd64 1:2.47.2-0.1 [8788 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 googletest all 1.16.0-1 [517 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libseqan3-dev all 3.4.0~rc.3+ds-3 [769 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Fetched 116 MB in 5s (22.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-4_amd64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package architecture-properties:amd64. Preparing to unpack .../12-architecture-properties_0.2.5_amd64.deb ... Unpacking architecture-properties:amd64 (0.2.5) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_3.31.5-2_all.deb ... Unpacking cmake-data (3.31.5-2) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../19-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../20-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../21-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../22-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../23-libkrb5support0_1.21.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../24-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../25-libk5crypto3_1.21.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../26-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../27-libkrb5-3_1.21.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../28-libgssapi-krb5-2_1.21.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../29-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../30-libidn2-0_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../31-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../32-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../33-libldap2_2.6.9+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../34-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../35-libnghttp3-9_1.6.0-2_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.6.0-2) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../36-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../37-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../38-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../39-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../40-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../41-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../42-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../43-libcurl4t64_8.12.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.12.1-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../44-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../45-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../46-librhash1_1.4.5-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../47-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../48-cmake_3.31.5-2_amd64.deb ... Unpacking cmake (3.31.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../49-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../50-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../51-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../52-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../53-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../54-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../55-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../56-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../57-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../58-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../59-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../60-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../61-libedit2_3.1-20250104-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20250104-1) ... Selecting previously unselected package libz3-4:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/58407/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/58407/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/seqan-needle-1.0.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-needle_1.0.3+ds-1_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.3+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_configure --arch -- -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.4.0-rc.3 -- Found Git: /usr/bin/git (found version "2.47.2") CMake Deprecation Warning at vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (16.7s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY SEQAN3_NO_LEMON -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: No configuration needed for the docs I: No configuration needed for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_build --arch -- tests cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" tests VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 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"/usr/bin/gcc-ar-14" qc ../lib/libneedle_lib.a CMakeFiles/needle_lib.dir/estimate.cpp.o CMakeFiles/needle_lib.dir/ibf.cpp.o "/usr/bin/gcc-ranlib-14" ../lib/libneedle_lib.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 9%] Built target needle_lib make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 12%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DNEEDLE_DATE=\"2024-11-07\" -DNEEDLE_VERSION=\"1.0.3\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle.dir/main.cpp.o -MF CMakeFiles/needle.dir/main.cpp.o.d -o CMakeFiles/needle.dir/main.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp [ 16%] Linking CXX executable ../bin/needle cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/needle.dir/link.d CMakeFiles/needle.dir/main.cpp.o -o ../bin/needle ../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 16%] Built target needle make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/depend make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/delete_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/count_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/insert_delete_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/estimate_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibf_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibfmin_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/minimiser_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/depend make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/needle_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/ibf_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/depend make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/insert_options_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/build make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/build [ 19%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/count_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build [ 22%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/build cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -MF CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o.d -o CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/insert_delete_test.cpp [ 25%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/estimate_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend [ 29%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -MF CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o.d -o CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/delete_options_test.cpp [ 32%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend [ 38%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/estimate_options_test.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 35%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibf_test.cpp make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibfmin_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/ibf_options_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 41%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o [ 45%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/needle_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/minimiser_test.cpp make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 51%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o [ 48%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -MF CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o.d -o CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/minimiser_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -MF CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o.d -o CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/insert_options_test.cpp make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 54%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -MF CMakeFiles/count_options_test.dir/count_options_test.cpp.o.d -o CMakeFiles/count_options_test.dir/count_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/count_options_test.cpp [ 58%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/estimate_options_test.cpp [ 61%] Linking CXX executable ../../needle_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_options_test.dir/link.txt --verbose=1 [ 64%] Linking CXX executable ../../minimiser_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_options_test.dir/link.txt --verbose=1 [ 67%] Linking CXX executable ../../count_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_options_test.dir/link.txt --verbose=1 [ 70%] Linking CXX executable ../../ibf_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/needle_options_test.dir/link.d CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -o ../../needle_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target needle_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_options_test.dir/link.d CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -o ../../ibf_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target ibf_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_options_test.dir/link.d CMakeFiles/count_options_test.dir/count_options_test.cpp.o -o ../../count_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target count_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_options_test.dir/link.d CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o ../../minimiser_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target minimiser_options_test [ 74%] Linking CXX executable ../../insert_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_options_test.dir/link.txt --verbose=1 [ 77%] Linking CXX executable ../../count_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_test.dir/link.txt --verbose=1 [ 80%] Linking CXX executable ../../estimate_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_options_test.dir/link.txt --verbose=1 [ 83%] Linking CXX executable ../../delete_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/delete_options_test.dir/link.txt --verbose=1 [ 87%] Linking CXX executable ../../estimate_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 [ 90%] Linking CXX executable ../../insert_delete_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_delete_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_options_test.dir/link.d CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -o ../../insert_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 90%] Built target insert_options_test [ 93%] Linking CXX executable ../../ibfmin_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../../minimiser_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_test.dir/link.txt --verbose=1 [100%] Linking CXX executable ../../ibf_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_options_test.dir/link.d CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -o ../../estimate_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_test.dir/link.d CMakeFiles/count_test.dir/count_test.cpp.o -o ../../count_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target count_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/delete_options_test.dir/link.d CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -o ../../delete_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target delete_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_test.dir/link.d CMakeFiles/estimate_test.dir/estimate_test.cpp.o -o ../../estimate_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_delete_test.dir/link.d CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -o ../../insert_delete_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target insert_delete_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_test.dir/link.d CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -o ../../minimiser_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target minimiser_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibfmin_test.dir/link.d CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ../../ibfmin_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target ibfmin_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_test.dir/link.d CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ../../ibf_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target ibf_test make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/CMakeFiles/tests.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f 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'HTML_TIMESTAMP' at line 224 of file 'doc/doxygen_cfg' has become obsolete. 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To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: tag INCLUDE_PATH: include path '${CMAKE_SOURCE_DIR}/include' does not exist warning: source '${CMAKE_SOURCE_DIR}/include' is not a readable file or directory... skipping. Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/include Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Reading /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating file documentation... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2seqan-needle-1_80_83_09ds_2_l_i_c_e_n_s_e... Generating group documentation... Generating class documentation... Generating docs for compound all_arguments... Generating docs for compound estimate_arguments... Generating docs for compound estimate_ibf_arguments... Generating docs for compound min_arguments... Generating docs for compound minimiser_arguments... Generating docs for compound my_traits... Generating docs for compound RandomGenerator... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 125/65536 hits=272 misses=132 symbol lookup cache used 135/65536 hits=345 misses=135 finished... make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules execute_after_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' obj-*/bin/needle --export-help man > debian/needle.1 obj-*/bin/needle count --export-help man > debian/needle-count.1 obj-*/bin/needle estimate --export-help man > debian/needle-estimate.1 obj-*/bin/needle ibf --export-help man > debian/needle-ibf.1 obj-*/bin/needle minimiser --export-help man > debian/needle-minimiser.1 make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: Not running tests for the docs I: Not running tests for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_test -Nseqan-needle-doc cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --output-on-failure --no-tests=error --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: count_test 1: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_test 1: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: insert_delete_test 2: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_delete_test 2: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 2: Test timeout computed to be: 10000000 test 3 Start 3: estimate_test 3: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_test 3: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 3: Test timeout computed to be: 10000000 test 4 Start 4: ibf_test 4: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_test 4: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 4: Test timeout computed to be: 10000000 test 5 Start 5: ibfmin_test 5: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibfmin_test 5: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 5: Test timeout computed to be: 10000000 test 6 Start 6: minimiser_test 6: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_test 6: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 6: Test timeout computed to be: 10000000 test 7 Start 7: needle_options_test 7: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/needle_options_test 7: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 7: Test timeout computed to be: 10000000 test 8 Start 8: ibf_options_test 8: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_options_test 8: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 8: Test timeout computed to be: 10000000 test 9 Start 9: insert_options_test 9: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_options_test 9: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 9: Test timeout computed to be: 10000000 test 10 Start 10: minimiser_options_test 10: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_options_test 10: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 10: Test timeout computed to be: 10000000 test 11 Start 11: estimate_options_test 11: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_options_test 11: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 11: Test timeout computed to be: 10000000 test 12 Start 12: count_options_test 12: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_options_test 12: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 12: Test timeout computed to be: 10000000 test 13 Start 13: delete_options_test 13: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/delete_options_test 13: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 13: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 4 tests from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 4 tests from count_test 1: [ RUN ] count_test.small_example 1: [ OK ] count_test.small_example (13 ms) 1: [ RUN ] count_test.small_example_paired 1: [ OK ] count_test.small_example_paired (29 ms) 1: [ RUN ] count_test.small_example_exclude 1: [ OK ] count_test.small_example_exclude (3 ms) 1: [ RUN ] count_test.genome_small_example 1: [ OK ] count_test.genome_small_example (0 ms) 1: [----------] 4 tests from count_test (47 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 4 tests from 1 test suite ran. (47 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete_test 2: [ RUN ] delete_test.no_given_thresholds 2: [ OK ] delete_test.no_given_thresholds (17 ms) 2: [----------] 1 test from delete_test (17 ms total) 2: 2: [----------] 8 tests from insert_test 2: [ RUN ] insert_test.ibf 2: [ OK ] insert_test.ibf (4 ms) 2: [ RUN ] insert_test.ibf_no_given_thresholds 2: [ OK ] insert_test.ibf_no_given_thresholds (11 ms) 2: [ RUN ] insert_test.ibf_delete 2: [ OK ] insert_test.ibf_delete (52 ms) 2: [ RUN ] insert_test.ibf_delete_no_given_threshold 2: [ OK ] insert_test.ibf_delete_no_given_threshold (40 ms) 2: [ RUN ] insert_test.ibfmin 2: [ OK ] insert_test.ibfmin (45 ms) 2: [ RUN ] insert_test.ibfmin_delete 2: [ OK ] insert_test.ibfmin_delete (14 ms) 2: [ RUN ] insert_test.ibfmin_no_given_thresholds 2: [ OK ] insert_test.ibfmin_no_given_thresholds (3 ms) 2: [ RUN ] insert_test.delete_ibfmin_no_given_thresholds 2: [ OK ] insert_test.delete_ibfmin_no_given_thresholds (40 ms) 2: [----------] 8 tests from insert_test (213 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 9 tests from 2 test suites ran. (231 ms total) 2: [ PASSED ] 9 tests. 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate_test 3: [ RUN ] estimate_test.small_example 3: [ OK ] estimate_test.small_example (12 ms) 3: [ RUN ] estimate_test.small_example_uncompressed 3: [ OK ] estimate_test.small_example_uncompressed (26 ms) 3: [ RUN ] estimate_test.small_example_gene_not_found 3: [ OK ] estimate_test.small_example_gene_not_found (1 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level 3: [ OK ] estimate_test.small_example_different_expressions_per_level (7 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1 (11 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed (10 ms) 3: [ RUN ] estimate_test.example 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 8 tests from 1 test suite. 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf_test 4: [ RUN ] ibf_test.given_expression_thresholds 4: [ OK ] ibf_test.given_expression_thresholds (9 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_include_file 4: [ OK ] ibf_test.given_expression_thresholds_include_file (2 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_exclude_file 4: [ OK ] ibf_test.given_expression_thresholds_exclude_file (6 ms) 4: [ RUN ] ibf_test.no_given_expression_thresholds 4: [ OK ] ibf_test.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibf_test.expression_thresholds_by_genome 4: [ OK ] ibf_test.expression_thresholds_by_genome (0 ms) 4: [ RUN ] ibf_test.throws 4: [ OK ] ibf_test.throws (4 ms) 4: [ RUN ] ibf_test.given_cutoffs 4: [ OK ] ibf_test.given_cutoffs (1 ms) 4: [ RUN ] ibf_test.different_file_sizes 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 6 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 6 tests from ibfmin_test 5: [ RUN ] ibfmin_test.given_expression_thresholds 5: [ OK ] ibfmin_test.given_expression_thresholds (5 ms) 5: [ RUN ] ibfmin_test.given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.given_expression_thresholds_multiple_threads (50 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds 5: [ OK ] ibfmin_test.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.expression_thresholds_by_genome 5: [ OK ] ibfmin_test.expression_thresholds_by_genome (29 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.no_given_expression_thresholds_multiple_threads (16 ms) 5: [ RUN ] ibfmin_test.different_shape 5: [ OK ] ibfmin_test.different_shape (14 ms) 5: [----------] 6 tests from ibfmin_test (117 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 6 tests from 1 test suite ran. (118 ms total) 5: [ PASSED ] 6 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 8 tests from minimiser_test 6: [ RUN ] minimiser_test.small_example 6: [ OK ] minimiser_test.small_example (30 ms) 6: [ RUN ] minimiser_test.small_example_different_shape 6: [ OK ] minimiser_test.small_example_different_shape (15 ms) 6: [ RUN ] minimiser_test.small_example_samplewise 6: [ OK ] minimiser_test.small_example_samplewise (4 ms) 6: [ RUN ] minimiser_test.cutoff_by_filesize 6: [ OK ] minimiser_test.cutoff_by_filesize (35 ms) 6: [ RUN ] minimiser_test.small_example_two_threads 6: [ OK ] minimiser_test.small_example_two_threads (34 ms) 6: [ RUN ] minimiser_test.small_example_include 6: [ OK ] minimiser_test.small_example_include (1 ms) 6: [ RUN ] minimiser_test.small_example_exclude 6: [ OK ] minimiser_test.small_example_exclude (1 ms) 6: [ RUN ] minimiser_test.small_example_shape 6: [ OK ] minimiser_test.small_example_shape (3 ms) 6: [----------] 8 tests from minimiser_test (136 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 8 tests from 1 test suite ran. (148 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options 7: [ OK ] needle_options_test.no_options (57 ms) 7: [ RUN ] needle_options_test.fail_no_argument 7: [ OK ] needle_options_test.fail_no_argument (34 ms) 7: [----------] 2 tests from needle_options_test (91 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 2 tests from 1 test suite ran. (91 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options 8: [ OK ] ibf_options_test.ibf_no_options (28 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument 8: [ OK ] ibf_options_test.ibf_fail_no_argument (46 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options 9: [ OK ] insert_options_test.insert_no_options (24 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument 9: [ OK ] insert_options_test.insert_fail_no_argument (32 ms) 9: [ RUN ] insert_options_test.with_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options 10: [ OK ] minimiser_options_test.no_options (34 ms) 10: [ RUN ] minimiser_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.fail_no_argument (39 ms) 10: [ RUN ] minimiser_options_test.with_arguments 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. 11: [----------] Global test environment set-up. 11: [----------] 5 tests from estimate_options_test 11: [ RUN ] estimate_options_test.no_options 11: [ OK ] estimate_options_test.no_options (45 ms) 11: [ RUN ] estimate_options_test.fail_no_argument 12: Running main() from ./googletest/src/gtest_main.cc 12: [==========] Running 8 tests from 2 test suites. 12: [----------] Global test environment set-up. 12: [----------] 5 tests from count_options_test 12: [ RUN ] count_options_test.no_options 1/13 Test #1: count_test ....................... Passed 0.39 sec 2/13 Test #2: insert_delete_test ............... Passed 0.37 sec 3/13 Test #5: ibfmin_test ...................... Passed 0.28 sec 4/13 Test #6: minimiser_test ................... Passed 0.27 sec 5/13 Test #7: needle_options_test .............. Passed 0.24 sec 8: [ OK ] ibf_options_test.ibf_fail_contradiction (91 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 12: [ OK ] count_options_test.no_options (58 ms) 12: [ RUN ] count_options_test.fail_no_argument 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options 11: [ OK ] estimate_options_test.fail_no_argument (68 ms) 11: [ RUN ] estimate_options_test.with_argument 10: [ OK ] minimiser_options_test.with_arguments (64 ms) 10: [ RUN ] minimiser_options_test.cutoff 13: [ OK ] delete_options_test.delete_no_options (66 ms) 13: [ RUN ] delete_options_test.with_argument 12: [ OK ] count_options_test.fail_no_argument (50 ms) 12: [ RUN ] count_options_test.with_arguments 8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (58 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_fpr 10: [ OK ] minimiser_options_test.cutoff (56 ms) 10: [ RUN ] minimiser_options_test.multiple_sample 12: [ OK ] count_options_test.with_arguments (49 ms) 12: [ RUN ] count_options_test.multithreads 8: [ OK ] ibf_options_test.ibf_fail_no_fpr (48 ms) 8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs 10: [ OK ] minimiser_options_test.multiple_sample (50 ms) 10: [ RUN ] minimiser_options_test.multithreads 12: [ OK ] count_options_test.multithreads (58 ms) 12: [ RUN ] count_options_test.paired 8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (77 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument 10: [ OK ] minimiser_options_test.multithreads (95 ms) 10: [ RUN ] minimiser_options_test.paired 12: [ OK ] count_options_test.paired (79 ms) 12: [----------] 5 tests from count_options_test (295 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options 10: [ OK ] minimiser_options_test.paired (71 ms) 10: [ RUN ] minimiser_options_test.invalid_argument 12: [ OK ] genome_options_test.no_options (86 ms) 12: [ RUN ] genome_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.invalid_argument (35 ms) 10: [----------] 8 tests from minimiser_options_test (449 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 8 tests from 1 test suite ran. (450 ms total) 10: [ PASSED ] 8 tests. 6/13 Test #10: minimiser_options_test ........... Passed 0.48 sec 12: [ OK ] genome_options_test.fail_no_argument (71 ms) 12: [ RUN ] genome_options_test.with_arguments 12: [ OK ] genome_options_test.with_arguments (73 ms) 12: [----------] 3 tests from genome_options_test (231 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 8 tests from 2 test suites ran. (527 ms total) 12: [ PASSED ] 8 tests. 7/13 Test #12: count_options_test ............... Passed 0.56 sec 4: [ OK ] ibf_test.different_file_sizes (26792 ms) 4: [----------] 8 tests from ibf_test (26819 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 8 tests from 1 test suite ran. (26819 ms total) 4: [ PASSED ] 8 tests. 8/13 Test #4: ibf_test ......................... Passed 26.87 sec 3: [ OK ] estimate_test.example (37952 ms) 3: [ RUN ] estimate_test.example_multiple_threads 8: [ OK ] ibf_options_test.ibf_with_argument (49011 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_options 9: [ OK ] insert_options_test.with_argument (65954 ms) 9: [----------] 3 tests from insert_options_test (66011 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 3 tests from 1 test suite ran. (66011 ms total) 9: [ PASSED ] 3 tests. 9/13 Test #9: insert_options_test .............. Passed 66.06 sec 11: [ OK ] estimate_options_test.with_argument (66599 ms) 11: [ RUN ] estimate_options_test.with_argument_normalization_method 3: [ OK ] estimate_test.example_multiple_threads (49086 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level 3: [ OK ] estimate_test.example_different_expressions_per_level (7416 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level_multiple_threads 3: [ OK ] estimate_test.example_different_expressions_per_level_multiple_threads (5288 ms) 3: [----------] 10 tests from estimate_test (99814 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 10 tests from 1 test suite ran. (99814 ms total) 3: [ PASSED ] 10 tests. 10/13 Test #3: estimate_test .................... Passed 99.86 sec 8: [ OK ] ibf_options_test.ibf_with_argument_with_options (52151 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape 13: [ OK ] delete_options_test.with_argument (101999 ms) 13: [----------] 2 tests from delete_options_test (102066 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 2 tests from 1 test suite ran. (102066 ms total) 13: [ PASSED ] 2 tests. 11/13 Test #13: delete_options_test .............. Passed 102.10 sec 11: [ OK ] estimate_options_test.with_argument_normalization_method (65416 ms) 11: [ RUN ] estimate_options_test.with_argument_out 8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (60515 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options 8: [ OK ] ibf_options_test.ibfmin_no_options (27 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument 8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (31 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (179 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (27 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr 8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (35 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs 8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (27 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument 8: [ OK ] ibf_options_test.ibfmin_with_argument (27 ms) 8: [ RUN ] ibf_options_test.compressed 8: [ OK ] ibf_options_test.compressed (27 ms) 8: [ RUN ] ibf_options_test.more_hash_functions 8: [ OK ] ibf_options_test.more_hash_functions (23 ms) 8: [ RUN ] ibf_options_test.expression_thresholds 8: [ OK ] ibf_options_test.expression_thresholds (35 ms) 8: [----------] 19 tests from ibf_options_test (162479 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 19 tests from 1 test suite ran. (162479 ms total) 8: [ PASSED ] 19 tests. 12/13 Test #8: ibf_options_test ................. Passed 162.52 sec 11: [ OK ] estimate_options_test.with_argument_out (51719 ms) 11: [----------] 5 tests from estimate_options_test (183849 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 5 tests from 1 test suite ran. (183849 ms total) 11: [ PASSED ] 5 tests. 13/13 Test #11: estimate_options_test ............ Passed 183.87 sec 100% tests passed, 0 tests failed out of 13 Total Test time (real) = 184.17 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' rm -Rf obj-*/test make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/seqan-needle-1.0.3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.4.0-rc.3 CMake Deprecation Warning at vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (13.4s) -- Generating done (0.7s) -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/seqan-needle-1.0.3+ds/debian/tmp/usr/bin/needle make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.3+ds-1_all.deb'. dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.3+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/58407/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/58407/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/58407 and its subdirectories I: Current time: Sun Feb 23 17:07:13 +14 2025 I: pbuilder-time-stamp: 1740280033 + false + set +x Sun Feb 23 03:07:13 UTC 2025 I: Signing ./b2/seqan-needle_1.0.3+ds-1_amd64.buildinfo as seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc Sun Feb 23 03:07:13 UTC 2025 I: Signed ./b2/seqan-needle_1.0.3+ds-1_amd64.buildinfo as ./b2/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc Sun Feb 23 03:07:13 UTC 2025 - build #2 for seqan-needle/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Sun Feb 23 03:07:14 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-6DCOmJh7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N: total 148 drwxr-xr-x 2 jenkins jenkins 4096 Feb 23 02:47 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 23 03:07 b2 -rw------- 1 jenkins jenkins 131334 Feb 23 02:47 rbuildlog.gvLREGr -rw-r--r-- 1 jenkins jenkins 2319 Nov 12 10:01 seqan-needle_1.0.3+ds-1.dsc /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b1: total 20308 -rw-r--r-- 1 jenkins jenkins 127578 Feb 23 02:47 build.log -rw-r--r-- 1 jenkins jenkins 5445592 Feb 23 02:47 seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 116208 Feb 23 02:47 seqan-needle-doc_1.0.3+ds-1_all.deb -rw-r--r-- 1 jenkins jenkins 6296 Feb 23 02:47 seqan-needle_1.0.3+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2319 Feb 23 02:47 seqan-needle_1.0.3+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 7034 Feb 23 02:47 seqan-needle_1.0.3+ds-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7916 Feb 23 02:47 seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2017 Feb 23 02:47 seqan-needle_1.0.3+ds-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 354920 Feb 23 02:47 seqan-needle_1.0.3+ds-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1756 Feb 23 02:47 seqan-needle_1.0.3+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 14656416 Feb 23 02:47 seqan-needle_1.0.3+ds.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b2: total 20264 -rw-r--r-- 1 jenkins jenkins 129582 Feb 23 03:07 build.log -rw-r--r-- 1 jenkins jenkins 5445592 Feb 23 03:07 seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 116208 Feb 23 03:07 seqan-needle-doc_1.0.3+ds-1_all.deb -rw-r--r-- 1 jenkins jenkins 6296 Feb 23 03:07 seqan-needle_1.0.3+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2319 Feb 23 03:07 seqan-needle_1.0.3+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 7025 Feb 23 03:07 seqan-needle_1.0.3+ds-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7907 Feb 23 03:07 seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2017 Feb 23 03:07 seqan-needle_1.0.3+ds-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 354920 Feb 23 03:07 seqan-needle_1.0.3+ds-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1756 Feb 23 03:07 seqan-needle_1.0.3+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 14656416 Feb 23 03:07 seqan-needle_1.0.3+ds.orig.tar.xz Sun Feb 23 03:07:15 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sun Feb 23 03:07:15 UTC 2025 I: seqan-needle_1.0.3+ds-1_amd64.changes: Format: 1.8 Date: Mon, 11 Nov 2024 11:24:30 +0100 Source: seqan-needle Binary: seqan-needle seqan-needle-dbgsym seqan-needle-doc Architecture: amd64 all Version: 1.0.3+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: seqan-needle - pre-filter for the counting of very large collections of nucleoti seqan-needle-doc - HTML documentation for seqan-needle and its APIs Changes: seqan-needle (1.0.3+ds-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * Replace transitional package pkg-config by pkgconf in Build-Depends (routine-update) * Refreshed patches * d/rules: ensure that the tests are built Checksums-Sha1: bcb2da999134355d2b367cd5caf27ed932db41cc 5445592 seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb 8d4ae13ca69eba323e5f19f6402769c45590c407 116208 seqan-needle-doc_1.0.3+ds-1_all.deb 462d436edb6783b325ba9771e5c1865b3a1b6a98 7034 seqan-needle_1.0.3+ds-1_amd64.buildinfo 103964027f9b5930780c9df6732cb5d3d86b0052 354920 seqan-needle_1.0.3+ds-1_amd64.deb Checksums-Sha256: 2da3ec5526197c4a5bc8d28d8ba88f301a300aa99a3d6402fc3090f34aa11816 5445592 seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb 5da92c4d42ea26c874714830f48c41ceefadd5b472cfa3f04c8f139b83423019 116208 seqan-needle-doc_1.0.3+ds-1_all.deb 9a2bbd9486a39a01fc2dfe64260cfef05ddf65c5af3736658908d021639a3a29 7034 seqan-needle_1.0.3+ds-1_amd64.buildinfo 33e72e708b2fab16bab9c14caf2576a7ecdfe0b12fbfec35e30022e5f986a1fe 354920 seqan-needle_1.0.3+ds-1_amd64.deb Files: 34f3eaaf4a65c77b91254e1cdcfd56f0 5445592 debug optional seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb 410befb172eb1121510483aa29cf5bec 116208 doc optional seqan-needle-doc_1.0.3+ds-1_all.deb 8a67eb7a0a7679fe0ec9d5879b36c568 7034 science optional seqan-needle_1.0.3+ds-1_amd64.buildinfo 8dab71b0438907c46f1f80d13e2279b8 354920 science optional seqan-needle_1.0.3+ds-1_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/seqan-needle_1.0.3+ds-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/seqan-needle_1.0.3+ds-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/seqan-needle_1.0.3+ds-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/seqan-needle_1.0.3+ds-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/seqan-needle_1.0.3+ds-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/seqan-needle_1.0.3+ds-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-23 02:47:47.546488140 +0000 +++ b2/build.log 2025-02-23 03:07:14.733855637 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Mar 27 21:07:15 -12 2026 -I: pbuilder-time-stamp: 1774688835 +I: Current time: Sun Feb 23 16:47:51 +14 2025 +I: pbuilder-time-stamp: 1740278871 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4049726/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/58407/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 23 02:48 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/58407/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/58407/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='8d60571c7c9d49b09d84cae3be007ddc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4049726' - PS1='# ' - PS2='> ' + INVOCATION_ID=7825caa1cc924b658cc5a78bb309d91c + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=58407 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/pbuilderrc_9qkh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b1 --logfile b1/build.log seqan-needle_1.0.3+ds-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/pbuilderrc_SMhZ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b2 --logfile b2/build.log seqan-needle_1.0.3+ds-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4049726/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/58407/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -209,7 +241,7 @@ Get: 82 http://deb.debian.org/debian unstable/main amd64 libseqan3-dev all 3.4.0~rc.3+ds-3 [769 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] -Fetched 116 MB in 2s (66.0 MB/s) +Fetched 116 MB in 5s (22.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) @@ -560,7 +592,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqan-needle-1.0.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.3+ds-1_source.changes +I: user script /srv/workspace/pbuilder/58407/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/58407/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqan-needle-1.0.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-needle_1.0.3+ds-1_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.3+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -622,8 +658,8 @@ -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. --- Configuring done (2.7s) --- Generating done (0.1s) +-- Configuring done (16.7s) +-- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: @@ -642,7 +678,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_build --arch -- tests - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" tests VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" tests VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 @@ -659,10 +695,10 @@ make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -[ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o +[ 3%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp [ 9%] Linking CXX static library ../lib/libneedle_lib.a cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/needle_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_lib.dir/link.txt --verbose=1 @@ -685,111 +721,111 @@ [ 16%] Built target needle make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/depend make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/depend -make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/depend -make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/delete_options_test.dir/DependInfo.cmake "--color=" -make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/count_test.dir/DependInfo.cmake "--color=" -make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend -make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/insert_delete_test.dir/DependInfo.cmake "--color=" -make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/estimate_test.dir/DependInfo.cmake "--color=" -make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibf_test.dir/DependInfo.cmake "--color=" +make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibfmin_test.dir/DependInfo.cmake "--color=" -make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/depend -make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/minimiser_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/depend +make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/needle_options_test.dir/DependInfo.cmake "--color=" -make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend +make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/ibf_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/insert_options_test.dir/DependInfo.cmake "--color=" -make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake "--color=" -make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/estimate_options_test.dir/DependInfo.cmake "--color=" -make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake "--color=" -make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/depend make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build +make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/insert_options_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/build -make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/build +make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build +make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake "--color=" +make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build +make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build +make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/build +[ 19%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/count_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build +[ 22%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/build +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -MF CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o.d -o CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/insert_delete_test.cpp +[ 25%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/estimate_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend +[ 29%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -MF CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o.d -o CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/delete_options_test.cpp +[ 32%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o +make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend +[ 38%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/estimate_options_test.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build +[ 35%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibf_test.cpp +make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibfmin_test.cpp +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/ibf_options_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +[ 41%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o +[ 45%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/needle_options_test.cpp +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/minimiser_test.cpp +make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -[ 32%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -[ 32%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -[ 32%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -[ 32%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -[ 32%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o -[ 38%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -MF CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o.d -o CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/delete_options_test.cpp -[ 41%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -[ 41%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -MF CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o.d -o CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/insert_delete_test.cpp -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/count_test.cpp -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/estimate_test.cpp -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibf_test.cpp -[ 45%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -[ 48%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -[ 51%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -[ 54%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/minimiser_test.cpp -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/needle_options_test.cpp -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -MF CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o.d -o CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/insert_options_test.cpp -[ 58%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/ibf_options_test.cpp -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibfmin_test.cpp +[ 51%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o +[ 48%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -MF CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o.d -o CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/minimiser_options_test.cpp -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/estimate_options_test.cpp +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -MF CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o.d -o CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/insert_options_test.cpp +make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build +make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +[ 54%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -MF CMakeFiles/count_options_test.dir/count_options_test.cpp.o.d -o CMakeFiles/count_options_test.dir/count_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/count_options_test.cpp +[ 58%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/estimate_options_test.cpp [ 61%] Linking CXX executable ../../needle_options_test -[ 64%] Linking CXX executable ../../minimiser_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_options_test.dir/link.txt --verbose=1 +[ 64%] Linking CXX executable ../../minimiser_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_options_test.dir/link.txt --verbose=1 [ 67%] Linking CXX executable ../../count_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_options_test.dir/link.txt --verbose=1 @@ -801,57 +837,57 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_options_test.dir/link.d CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -o ../../ibf_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target ibf_options_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_options_test.dir/link.d CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o ../../minimiser_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -[ 70%] Built target minimiser_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_options_test.dir/link.d CMakeFiles/count_options_test.dir/count_options_test.cpp.o -o ../../count_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target count_options_test +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_options_test.dir/link.d CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o ../../minimiser_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a +make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +[ 70%] Built target minimiser_options_test [ 74%] Linking CXX executable ../../insert_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_options_test.dir/link.txt --verbose=1 -[ 77%] Linking CXX executable ../../delete_options_test -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/delete_options_test.dir/link.txt --verbose=1 -[ 80%] Linking CXX executable ../../count_test +[ 77%] Linking CXX executable ../../count_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_test.dir/link.txt --verbose=1 -[ 83%] Linking CXX executable ../../estimate_test -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 -[ 87%] Linking CXX executable ../../estimate_options_test +[ 80%] Linking CXX executable ../../estimate_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_options_test.dir/link.txt --verbose=1 -[ 90%] Linking CXX executable ../../ibfmin_test -cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 -[ 93%] Linking CXX executable ../../insert_delete_test +[ 83%] Linking CXX executable ../../delete_options_test +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/delete_options_test.dir/link.txt --verbose=1 +[ 87%] Linking CXX executable ../../estimate_test +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 +[ 90%] Linking CXX executable ../../insert_delete_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_delete_test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_options_test.dir/link.d CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -o ../../insert_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a +make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +[ 90%] Built target insert_options_test +[ 93%] Linking CXX executable ../../ibfmin_test +cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../../minimiser_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_test.dir/link.txt --verbose=1 [100%] Linking CXX executable ../../ibf_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/delete_options_test.dir/link.d CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -o ../../delete_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -[100%] Built target delete_options_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_options_test.dir/link.d CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -o ../../insert_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -[100%] Built target insert_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_options_test.dir/link.d CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -o ../../estimate_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_test.dir/link.d CMakeFiles/count_test.dir/count_test.cpp.o -o ../../count_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target count_test +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/delete_options_test.dir/link.d CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -o ../../delete_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a +make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +[100%] Built target delete_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_test.dir/link.d CMakeFiles/estimate_test.dir/estimate_test.cpp.o -o ../../estimate_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibfmin_test.dir/link.d CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ../../ibfmin_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -[100%] Built target ibfmin_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_delete_test.dir/link.d CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -o ../../insert_delete_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target insert_delete_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_test.dir/link.d CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ../../ibf_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_test.dir/link.d CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -o ../../minimiser_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' -[100%] Built target ibf_test [100%] Built target minimiser_test +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibfmin_test.dir/link.d CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ../../ibfmin_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a +make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +[100%] Built target ibfmin_test +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_test.dir/link.d CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ../../ibf_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a +make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' +[100%] Built target ibf_test make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/CMakeFiles/tests.dir/DependInfo.cmake "--color=" @@ -1035,10 +1071,10 @@ I: Not running tests for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_test -Nseqan-needle-doc - cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 + cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --output-on-failure --no-tests=error --verbose -j42 +/usr/bin/ctest --force-new-ctest-process --output-on-failure --no-tests=error --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu @@ -1132,325 +1168,325 @@ 1: [----------] Global test environment set-up. 1: [----------] 4 tests from count_test 1: [ RUN ] count_test.small_example -1: [ OK ] count_test.small_example (1 ms) +1: [ OK ] count_test.small_example (13 ms) 1: [ RUN ] count_test.small_example_paired -1: [ OK ] count_test.small_example_paired (1 ms) +1: [ OK ] count_test.small_example_paired (29 ms) 1: [ RUN ] count_test.small_example_exclude -1: [ OK ] count_test.small_example_exclude (0 ms) +1: [ OK ] count_test.small_example_exclude (3 ms) 1: [ RUN ] count_test.genome_small_example 1: [ OK ] count_test.genome_small_example (0 ms) -1: [----------] 4 tests from count_test (4 ms total) +1: [----------] 4 tests from count_test (47 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 4 tests from 1 test suite ran. (4 ms total) +1: [==========] 4 tests from 1 test suite ran. (47 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete_test 2: [ RUN ] delete_test.no_given_thresholds -2: [ OK ] delete_test.no_given_thresholds (2 ms) -2: [----------] 1 test from delete_test (2 ms total) +2: [ OK ] delete_test.no_given_thresholds (17 ms) +2: [----------] 1 test from delete_test (17 ms total) 2: 2: [----------] 8 tests from insert_test 2: [ RUN ] insert_test.ibf -2: [ OK ] insert_test.ibf (0 ms) +2: [ OK ] insert_test.ibf (4 ms) 2: [ RUN ] insert_test.ibf_no_given_thresholds -2: [ OK ] insert_test.ibf_no_given_thresholds (0 ms) +2: [ OK ] insert_test.ibf_no_given_thresholds (11 ms) 2: [ RUN ] insert_test.ibf_delete -2: [ OK ] insert_test.ibf_delete (1 ms) +2: [ OK ] insert_test.ibf_delete (52 ms) 2: [ RUN ] insert_test.ibf_delete_no_given_threshold -2: [ OK ] insert_test.ibf_delete_no_given_threshold (2 ms) +2: [ OK ] insert_test.ibf_delete_no_given_threshold (40 ms) 2: [ RUN ] insert_test.ibfmin -2: [ OK ] insert_test.ibfmin (0 ms) +2: [ OK ] insert_test.ibfmin (45 ms) 2: [ RUN ] insert_test.ibfmin_delete -2: [ OK ] insert_test.ibfmin_delete (1 ms) +2: [ OK ] insert_test.ibfmin_delete (14 ms) 2: [ RUN ] insert_test.ibfmin_no_given_thresholds -2: [ OK ] insert_test.ibfmin_no_given_thresholds (0 ms) +2: [ OK ] insert_test.ibfmin_no_given_thresholds (3 ms) 2: [ RUN ] insert_test.delete_ibfmin_no_given_thresholds -2: [ OK ] insert_test.delete_ibfmin_no_given_thresholds (3 ms) -2: [----------] 8 tests from insert_test (12 ms total) +2: [ OK ] insert_test.delete_ibfmin_no_given_thresholds (40 ms) +2: [----------] 8 tests from insert_test (213 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 9 tests from 2 test suites ran. (14 ms total) +2: [==========] 9 tests from 2 test suites ran. (231 ms total) 2: [ PASSED ] 9 tests. 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate_test 3: [ RUN ] estimate_test.small_example -3: [ OK ] estimate_test.small_example (2 ms) +3: [ OK ] estimate_test.small_example (12 ms) 3: [ RUN ] estimate_test.small_example_uncompressed -3: [ OK ] estimate_test.small_example_uncompressed (0 ms) +3: [ OK ] estimate_test.small_example_uncompressed (26 ms) 3: [ RUN ] estimate_test.small_example_gene_not_found -3: [ OK ] estimate_test.small_example_gene_not_found (0 ms) +3: [ OK ] estimate_test.small_example_gene_not_found (1 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level -3: [ OK ] estimate_test.small_example_different_expressions_per_level (0 ms) +3: [ OK ] estimate_test.small_example_different_expressions_per_level (7 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1 -3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1 (1 ms) +3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1 (11 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed -3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed (0 ms) +3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed (10 ms) 3: [ RUN ] estimate_test.example 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 8 tests from 1 test suite. 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf_test 4: [ RUN ] ibf_test.given_expression_thresholds -4: [ OK ] ibf_test.given_expression_thresholds (1 ms) +4: [ OK ] ibf_test.given_expression_thresholds (9 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_include_file -4: [ OK ] ibf_test.given_expression_thresholds_include_file (1 ms) +4: [ OK ] ibf_test.given_expression_thresholds_include_file (2 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_exclude_file -4: [ OK ] ibf_test.given_expression_thresholds_exclude_file (0 ms) +4: [ OK ] ibf_test.given_expression_thresholds_exclude_file (6 ms) 4: [ RUN ] ibf_test.no_given_expression_thresholds 4: [ OK ] ibf_test.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibf_test.expression_thresholds_by_genome 4: [ OK ] ibf_test.expression_thresholds_by_genome (0 ms) 4: [ RUN ] ibf_test.throws -4: [ OK ] ibf_test.throws (0 ms) +4: [ OK ] ibf_test.throws (4 ms) 4: [ RUN ] ibf_test.given_cutoffs -4: [ OK ] ibf_test.given_cutoffs (0 ms) +4: [ OK ] ibf_test.given_cutoffs (1 ms) 4: [ RUN ] ibf_test.different_file_sizes 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 6 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 6 tests from ibfmin_test 5: [ RUN ] ibfmin_test.given_expression_thresholds -5: [ OK ] ibfmin_test.given_expression_thresholds (0 ms) +5: [ OK ] ibfmin_test.given_expression_thresholds (5 ms) 5: [ RUN ] ibfmin_test.given_expression_thresholds_multiple_threads -5: [ OK ] ibfmin_test.given_expression_thresholds_multiple_threads (2 ms) +5: [ OK ] ibfmin_test.given_expression_thresholds_multiple_threads (50 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds 5: [ OK ] ibfmin_test.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.expression_thresholds_by_genome -5: [ OK ] ibfmin_test.expression_thresholds_by_genome (1 ms) +5: [ OK ] ibfmin_test.expression_thresholds_by_genome (29 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds_multiple_threads -5: [ OK ] ibfmin_test.no_given_expression_thresholds_multiple_threads (1 ms) +5: [ OK ] ibfmin_test.no_given_expression_thresholds_multiple_threads (16 ms) 5: [ RUN ] ibfmin_test.different_shape -5: [ OK ] ibfmin_test.different_shape (1 ms) -5: [----------] 6 tests from ibfmin_test (7 ms total) +5: [ OK ] ibfmin_test.different_shape (14 ms) +5: [----------] 6 tests from ibfmin_test (117 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 6 tests from 1 test suite ran. (7 ms total) +5: [==========] 6 tests from 1 test suite ran. (118 ms total) 5: [ PASSED ] 6 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 8 tests from minimiser_test 6: [ RUN ] minimiser_test.small_example -6: [ OK ] minimiser_test.small_example (2 ms) +6: [ OK ] minimiser_test.small_example (30 ms) 6: [ RUN ] minimiser_test.small_example_different_shape -6: [ OK ] minimiser_test.small_example_different_shape (0 ms) +6: [ OK ] minimiser_test.small_example_different_shape (15 ms) 6: [ RUN ] minimiser_test.small_example_samplewise -6: [ OK ] minimiser_test.small_example_samplewise (0 ms) +6: [ OK ] minimiser_test.small_example_samplewise (4 ms) 6: [ RUN ] minimiser_test.cutoff_by_filesize -6: [ OK ] minimiser_test.cutoff_by_filesize (0 ms) +6: [ OK ] minimiser_test.cutoff_by_filesize (35 ms) 6: [ RUN ] minimiser_test.small_example_two_threads -6: [ OK ] minimiser_test.small_example_two_threads (1 ms) +6: [ OK ] minimiser_test.small_example_two_threads (34 ms) 6: [ RUN ] minimiser_test.small_example_include -6: [ OK ] minimiser_test.small_example_include (0 ms) +6: [ OK ] minimiser_test.small_example_include (1 ms) 6: [ RUN ] minimiser_test.small_example_exclude -6: [ OK ] minimiser_test.small_example_exclude (0 ms) +6: [ OK ] minimiser_test.small_example_exclude (1 ms) 6: [ RUN ] minimiser_test.small_example_shape -6: [ OK ] minimiser_test.small_example_shape (0 ms) -6: [----------] 8 tests from minimiser_test (6 ms total) +6: [ OK ] minimiser_test.small_example_shape (3 ms) +6: [----------] 8 tests from minimiser_test (136 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 8 tests from 1 test suite ran. (6 ms total) +6: [==========] 8 tests from 1 test suite ran. (148 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options -7: [ OK ] needle_options_test.no_options (3 ms) +7: [ OK ] needle_options_test.no_options (57 ms) 7: [ RUN ] needle_options_test.fail_no_argument -7: [ OK ] needle_options_test.fail_no_argument (3 ms) -7: [----------] 2 tests from needle_options_test (6 ms total) +7: [ OK ] needle_options_test.fail_no_argument (34 ms) +7: [----------] 2 tests from needle_options_test (91 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 2 tests from 1 test suite ran. (6 ms total) +7: [==========] 2 tests from 1 test suite ran. (91 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options -8: [ OK ] ibf_options_test.ibf_no_options (3 ms) +8: [ OK ] ibf_options_test.ibf_no_options (28 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument -8: [ OK ] ibf_options_test.ibf_fail_no_argument (3 ms) +8: [ OK ] ibf_options_test.ibf_fail_no_argument (46 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options -9: [ OK ] insert_options_test.insert_no_options (3 ms) +9: [ OK ] insert_options_test.insert_no_options (24 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument +9: [ OK ] insert_options_test.insert_fail_no_argument (32 ms) +9: [ RUN ] insert_options_test.with_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options -10: [ OK ] minimiser_options_test.no_options (3 ms) +10: [ OK ] minimiser_options_test.no_options (34 ms) 10: [ RUN ] minimiser_options_test.fail_no_argument +10: [ OK ] minimiser_options_test.fail_no_argument (39 ms) +10: [ RUN ] minimiser_options_test.with_arguments 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. 11: [----------] Global test environment set-up. 11: [----------] 5 tests from estimate_options_test 11: [ RUN ] estimate_options_test.no_options +11: [ OK ] estimate_options_test.no_options (45 ms) +11: [ RUN ] estimate_options_test.fail_no_argument 12: Running main() from ./googletest/src/gtest_main.cc 12: [==========] Running 8 tests from 2 test suites. 12: [----------] Global test environment set-up. 12: [----------] 5 tests from count_options_test 12: [ RUN ] count_options_test.no_options - 1/13 Test #1: count_test ....................... Passed 0.02 sec - 2/13 Test #2: insert_delete_test ............... Passed 0.02 sec - 3/13 Test #5: ibfmin_test ...................... Passed 0.02 sec - 4/13 Test #6: minimiser_test ................... Passed 0.01 sec - 5/13 Test #7: needle_options_test .............. Passed 0.01 sec -11: [ OK ] estimate_options_test.no_options (3 ms) -11: [ RUN ] estimate_options_test.fail_no_argument + 1/13 Test #1: count_test ....................... Passed 0.39 sec + 2/13 Test #2: insert_delete_test ............... Passed 0.37 sec + 3/13 Test #5: ibfmin_test ...................... Passed 0.28 sec + 4/13 Test #6: minimiser_test ................... Passed 0.27 sec + 5/13 Test #7: needle_options_test .............. Passed 0.24 sec +8: [ OK ] ibf_options_test.ibf_fail_contradiction (91 ms) +8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 +12: [ OK ] count_options_test.no_options (58 ms) +12: [ RUN ] count_options_test.fail_no_argument 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options -9: [ OK ] insert_options_test.insert_fail_no_argument (3 ms) -9: [ RUN ] insert_options_test.with_argument -12: [ OK ] count_options_test.no_options (3 ms) -12: [ RUN ] count_options_test.fail_no_argument -10: [ OK ] minimiser_options_test.fail_no_argument (3 ms) -10: [ RUN ] minimiser_options_test.with_arguments -8: [ OK ] ibf_options_test.ibf_fail_contradiction (3 ms) -8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 -13: [ OK ] delete_options_test.delete_no_options (3 ms) -13: [ RUN ] delete_options_test.with_argument -11: [ OK ] estimate_options_test.fail_no_argument (3 ms) +11: [ OK ] estimate_options_test.fail_no_argument (68 ms) 11: [ RUN ] estimate_options_test.with_argument -12: [ OK ] count_options_test.fail_no_argument (3 ms) -12: [ RUN ] count_options_test.with_arguments -10: [ OK ] minimiser_options_test.with_arguments (4 ms) +10: [ OK ] minimiser_options_test.with_arguments (64 ms) 10: [ RUN ] minimiser_options_test.cutoff -8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (4 ms) +13: [ OK ] delete_options_test.delete_no_options (66 ms) +13: [ RUN ] delete_options_test.with_argument +12: [ OK ] count_options_test.fail_no_argument (50 ms) +12: [ RUN ] count_options_test.with_arguments +8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (58 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_fpr -12: [ OK ] count_options_test.with_arguments (5 ms) +10: [ OK ] minimiser_options_test.cutoff (56 ms) +10: [ RUN ] minimiser_options_test.multiple_sample +12: [ OK ] count_options_test.with_arguments (49 ms) 12: [ RUN ] count_options_test.multithreads -8: [ OK ] ibf_options_test.ibf_fail_no_fpr (3 ms) +8: [ OK ] ibf_options_test.ibf_fail_no_fpr (48 ms) 8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs -10: [ OK ] minimiser_options_test.cutoff (4 ms) -10: [ RUN ] minimiser_options_test.multiple_sample -8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (3 ms) -8: [ RUN ] ibf_options_test.ibf_with_argument -12: [ OK ] count_options_test.multithreads (5 ms) -12: [ RUN ] count_options_test.paired -10: [ OK ] minimiser_options_test.multiple_sample (5 ms) +10: [ OK ] minimiser_options_test.multiple_sample (50 ms) 10: [ RUN ] minimiser_options_test.multithreads -10: [ OK ] minimiser_options_test.multithreads (4 ms) +12: [ OK ] count_options_test.multithreads (58 ms) +12: [ RUN ] count_options_test.paired +8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (77 ms) +8: [ RUN ] ibf_options_test.ibf_with_argument +10: [ OK ] minimiser_options_test.multithreads (95 ms) 10: [ RUN ] minimiser_options_test.paired -12: [ OK ] count_options_test.paired (6 ms) -12: [----------] 5 tests from count_options_test (24 ms total) +12: [ OK ] count_options_test.paired (79 ms) +12: [----------] 5 tests from count_options_test (295 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options -12: [ OK ] genome_options_test.no_options (3 ms) -12: [ RUN ] genome_options_test.fail_no_argument -10: [ OK ] minimiser_options_test.paired (5 ms) +10: [ OK ] minimiser_options_test.paired (71 ms) 10: [ RUN ] minimiser_options_test.invalid_argument -12: [ OK ] genome_options_test.fail_no_argument (3 ms) -12: [ RUN ] genome_options_test.with_arguments -10: [ OK ] minimiser_options_test.invalid_argument (3 ms) -10: [----------] 8 tests from minimiser_options_test (35 ms total) +12: [ OK ] genome_options_test.no_options (86 ms) +12: [ RUN ] genome_options_test.fail_no_argument +10: [ OK ] minimiser_options_test.invalid_argument (35 ms) +10: [----------] 8 tests from minimiser_options_test (449 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 8 tests from 1 test suite ran. (35 ms total) +10: [==========] 8 tests from 1 test suite ran. (450 ms total) 10: [ PASSED ] 8 tests. - 6/13 Test #10: minimiser_options_test ........... Passed 0.04 sec -12: [ OK ] genome_options_test.with_arguments (4 ms) -12: [----------] 3 tests from genome_options_test (11 ms total) + 6/13 Test #10: minimiser_options_test ........... Passed 0.48 sec +12: [ OK ] genome_options_test.fail_no_argument (71 ms) +12: [ RUN ] genome_options_test.with_arguments +12: [ OK ] genome_options_test.with_arguments (73 ms) +12: [----------] 3 tests from genome_options_test (231 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 8 tests from 2 test suites ran. (35 ms total) +12: [==========] 8 tests from 2 test suites ran. (527 ms total) 12: [ PASSED ] 8 tests. - 7/13 Test #12: count_options_test ............... Passed 0.04 sec -4: [ OK ] ibf_test.different_file_sizes (1716 ms) -4: [----------] 8 tests from ibf_test (1720 ms total) + 7/13 Test #12: count_options_test ............... Passed 0.56 sec +4: [ OK ] ibf_test.different_file_sizes (26792 ms) +4: [----------] 8 tests from ibf_test (26819 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 8 tests from 1 test suite ran. (1720 ms total) +4: [==========] 8 tests from 1 test suite ran. (26819 ms total) 4: [ PASSED ] 8 tests. - 8/13 Test #4: ibf_test ......................... Passed 1.72 sec -8: [ OK ] ibf_options_test.ibf_with_argument (2240 ms) -8: [ RUN ] ibf_options_test.ibf_with_argument_with_options -3: [ OK ] estimate_test.example (2679 ms) + 8/13 Test #4: ibf_test ......................... Passed 26.87 sec +3: [ OK ] estimate_test.example (37952 ms) 3: [ RUN ] estimate_test.example_multiple_threads -11: [ OK ] estimate_options_test.with_argument (3786 ms) -11: [ RUN ] estimate_options_test.with_argument_normalization_method -9: [ OK ] insert_options_test.with_argument (4113 ms) -9: [----------] 3 tests from insert_options_test (4120 ms total) +8: [ OK ] ibf_options_test.ibf_with_argument (49011 ms) +8: [ RUN ] ibf_options_test.ibf_with_argument_with_options +9: [ OK ] insert_options_test.with_argument (65954 ms) +9: [----------] 3 tests from insert_options_test (66011 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 3 tests from 1 test suite ran. (4121 ms total) +9: [==========] 3 tests from 1 test suite ran. (66011 ms total) 9: [ PASSED ] 3 tests. - 9/13 Test #9: insert_options_test .............. Passed 4.12 sec -8: [ OK ] ibf_options_test.ibf_with_argument_with_options (3041 ms) -8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape -3: [ OK ] estimate_test.example_multiple_threads (3042 ms) + 9/13 Test #9: insert_options_test .............. Passed 66.06 sec +11: [ OK ] estimate_options_test.with_argument (66599 ms) +11: [ RUN ] estimate_options_test.with_argument_normalization_method +3: [ OK ] estimate_test.example_multiple_threads (49086 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level -3: [ OK ] estimate_test.example_different_expressions_per_level (1131 ms) +3: [ OK ] estimate_test.example_different_expressions_per_level (7416 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level_multiple_threads -3: [ OK ] estimate_test.example_different_expressions_per_level_multiple_threads (1125 ms) -3: [----------] 10 tests from estimate_test (7985 ms total) +3: [ OK ] estimate_test.example_different_expressions_per_level_multiple_threads (5288 ms) +3: [----------] 10 tests from estimate_test (99814 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 10 tests from 1 test suite ran. (7985 ms total) +3: [==========] 10 tests from 1 test suite ran. (99814 ms total) 3: [ PASSED ] 10 tests. -10/13 Test #3: estimate_test .................... Passed 7.99 sec -13: [ OK ] delete_options_test.with_argument (11458 ms) -13: [----------] 2 tests from delete_options_test (11462 ms total) +10/13 Test #3: estimate_test .................... Passed 99.86 sec +8: [ OK ] ibf_options_test.ibf_with_argument_with_options (52151 ms) +8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape +13: [ OK ] delete_options_test.with_argument (101999 ms) +13: [----------] 2 tests from delete_options_test (102066 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 2 tests from 1 test suite ran. (11462 ms total) +13: [==========] 2 tests from 1 test suite ran. (102066 ms total) 13: [ PASSED ] 2 tests. -11/13 Test #13: delete_options_test .............. Passed 11.47 sec -11: [ OK ] estimate_options_test.with_argument_normalization_method (25538 ms) +11/13 Test #13: delete_options_test .............. Passed 102.10 sec +11: [ OK ] estimate_options_test.with_argument_normalization_method (65416 ms) 11: [ RUN ] estimate_options_test.with_argument_out -8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (36100 ms) +8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (60515 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options -8: [ OK ] ibf_options_test.ibfmin_no_options (4 ms) +8: [ OK ] ibf_options_test.ibfmin_no_options (27 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument -8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (4 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (31 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction -8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (3 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (179 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 -8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (4 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (27 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr -8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (3 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (35 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs -8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (3 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (27 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument -8: [ OK ] ibf_options_test.ibfmin_with_argument (3 ms) +8: [ OK ] ibf_options_test.ibfmin_with_argument (27 ms) 8: [ RUN ] ibf_options_test.compressed -8: [ OK ] ibf_options_test.compressed (3 ms) +8: [ OK ] ibf_options_test.compressed (27 ms) 8: [ RUN ] ibf_options_test.more_hash_functions -8: [ OK ] ibf_options_test.more_hash_functions (3 ms) +8: [ OK ] ibf_options_test.more_hash_functions (23 ms) 8: [ RUN ] ibf_options_test.expression_thresholds -8: [ OK ] ibf_options_test.expression_thresholds (3 ms) -8: [----------] 19 tests from ibf_options_test (41443 ms total) +8: [ OK ] ibf_options_test.expression_thresholds (35 ms) +8: [----------] 19 tests from ibf_options_test (162479 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 19 tests from 1 test suite ran. (41443 ms total) +8: [==========] 19 tests from 1 test suite ran. (162479 ms total) 8: [ PASSED ] 19 tests. -12/13 Test #8: ibf_options_test ................. Passed 41.45 sec -11: [ OK ] estimate_options_test.with_argument_out (39650 ms) -11: [----------] 5 tests from estimate_options_test (68984 ms total) +12/13 Test #8: ibf_options_test ................. Passed 162.52 sec +11: [ OK ] estimate_options_test.with_argument_out (51719 ms) +11: [----------] 5 tests from estimate_options_test (183849 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 5 tests from 1 test suite ran. (68984 ms total) +11: [==========] 5 tests from 1 test suite ran. (183849 ms total) 11: [ PASSED ] 5 tests. -13/13 Test #11: estimate_options_test ............ Passed 68.99 sec +13/13 Test #11: estimate_options_test ............ Passed 183.87 sec 100% tests passed, 0 tests failed out of 13 -Total Test time (real) = 69.00 sec +Total Test time (real) = 184.17 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' @@ -1459,7 +1495,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/seqan-needle-1.0.3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/seqan-needle-1.0.3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 @@ -1498,8 +1534,8 @@ -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. --- Configuring done (1.5s) --- Generating done (0.0s) +-- Configuring done (13.4s) +-- Generating done (0.7s) -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' @@ -1528,9 +1564,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.3+ds-1_all.deb'. +dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.3+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1538,12 +1574,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/58407/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/58407/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4049726 and its subdirectories -I: Current time: Fri Mar 27 21:10:46 -12 2026 -I: pbuilder-time-stamp: 1774689046 +I: removing directory /srv/workspace/pbuilder/58407 and its subdirectories +I: Current time: Sun Feb 23 17:07:13 +14 2025 +I: pbuilder-time-stamp: 1740280033 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/seqan-needle_1.0.3+ds-1.diff: 90.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/seqan-needle_1.0.3+ds-1.diff.gz b2/build.log: 86.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 86.4% -- replaced with stdout Sun Feb 23 03:07:16 UTC 2025 I: diffoscope 288 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_seqan-needle_unstable_amd64_1740280036 + touch /var/log/reproducible-builds/diffoscope_stamp_seqan-needle_unstable_amd64_1740280036 + RESULT=0 + systemd-run '--description=diffoscope on seqan-needle/1.0.3+ds-1 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_2-32679 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N --run-session -c jenkins-reproducible-unstable-diffoscope-7944326d-79bc-46ef-8892-1afc16c38f35 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/dbd-tmp-6yWKGsH ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/seqan-needle_1.0.3+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/seqan-needle_1.0.3+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/seqan-needle_1.0.3+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b1/seqan-needle_1.0.3+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b2/seqan-needle_1.0.3+ds-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_2-32679.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/seqan-needle_1.0.3+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/seqan-needle_1.0.3+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/seqan-needle_1.0.3+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b1/seqan-needle_1.0.3+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UZ8VT46N/b2/seqan-needle_1.0.3+ds-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 228ms CPU time consumed: 229ms _ _ ___ ___ __ _ __ _ _ __ _ __ ___ ___ __| | | ___ / __|/ _ \/ _` |/ _` | '_ \ _____| '_ \ / _ \/ _ \/ _` | |/ _ \ \__ \ __/ (_| | (_| | | | |_____| | | | __/ __/ (_| | | __/ |___/\___|\__, |\__,_|_| |_| |_| |_|\___|\___|\__,_|_|\___| |_| Sun Feb 23 03:07:17 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Sun Feb 23 03:07:17 UTC 2025 I: seqan-needle from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-23 03:07:17] INFO: Starting at 2025-02-23 03:07:17.835544 [2025-02-23 03:07:17] INFO: Generating the pages of 1 package(s) [2025-02-23 03:07:18] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/seqan-needle didn't produce a buildlog, even though it has been built. [2025-02-23 03:07:18] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/seqan-needle_1.0.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/seqan-needle_1.0.3+ds-1.diff.gz is missing [2025-02-23 03:07:18] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/seqan-needle_1.0.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/seqan-needle_1.0.3+ds-1.diff.gz is missing [2025-02-23 03:07:18] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/seqan-needle_1.0.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/seqan-needle_1.0.3+ds-1.diff.gz is missing [2025-02-23 03:07:18] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/seqan-needle_1.0.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/seqan-needle_1.0.3+ds-1.diff.gz is missing [2025-02-23 03:07:18] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/seqan-needle_1.0.1.0.0.git.3011926+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/seqan-needle_1.0.1.0.0.git.3011926+ds-4.diff.gz is missing [2025-02-23 03:07:18] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/seqan-needle_1.0.1.0.0.git.3011926+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/seqan-needle_1.0.1.0.0.git.3011926+ds-4.diff.gz is missing [2025-02-23 03:07:18] INFO: Finished at 2025-02-23 03:07:18.131617, took: 0:00:00.296077 Sun Feb 23 03:07:18 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/seqan-needle.html Sun Feb 23 03:07:18 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Feb 23 03:07:18 UTC 2025 I: Submitting 8.0K b1/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc https://buildinfo.debian.net/462d436edb6783b325ba9771e5c1865b3a1b6a98/seqan-needle_1.0.3+ds-1_all Sun Feb 23 03:07:21 UTC 2025 I: Submitting 8.0K b2/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc https://buildinfo.debian.net/646c00b34b11ff3eb4aa76641623170e212cb1cf/seqan-needle_1.0.3+ds-1_all Sun Feb 23 03:07:23 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Feb 23 03:07:23 UTC 2025 I: Done submitting .buildinfo files. Sun Feb 23 03:07:23 UTC 2025 I: Removing signed seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc files: removed './b1/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc' removed './b2/seqan-needle_1.0.3+ds-1_amd64.buildinfo.asc' 1740280043 amd64 unstable seqan-needle Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/seqan-needle_1.0.3+ds-1.rbuild.log: 84.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/seqan-needle_1.0.3+ds-1.rbuild.log.gz [2025-02-23 03:07:23] INFO: Starting at 2025-02-23 03:07:23.359061 [2025-02-23 03:07:23] INFO: Generating the pages of 1 package(s) [2025-02-23 03:07:23] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/seqan-needle_1.0.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/seqan-needle_1.0.3+ds-1.diff.gz is missing [2025-02-23 03:07:23] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/seqan-needle_1.0.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/seqan-needle_1.0.3+ds-1.diff.gz is missing [2025-02-23 03:07:23] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/seqan-needle_1.0.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/seqan-needle_1.0.3+ds-1.diff.gz is missing [2025-02-23 03:07:23] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/seqan-needle_1.0.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/seqan-needle_1.0.3+ds-1.diff.gz is missing [2025-02-23 03:07:23] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/seqan-needle_1.0.1.0.0.git.3011926+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/seqan-needle_1.0.1.0.0.git.3011926+ds-4.diff.gz is missing [2025-02-23 03:07:23] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/seqan-needle_1.0.1.0.0.git.3011926+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/seqan-needle_1.0.1.0.0.git.3011926+ds-4.diff.gz is missing [2025-02-23 03:07:23] INFO: Finished at 2025-02-23 03:07:23.687425, took: 0:00:00.328369 All cleanup done. Sun Feb 23 03:07:23 UTC 2025 - total duration: 0h 23m 24s. Sun Feb 23 03:07:23 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-E1alx5VZ, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 23min 30.456s CPU time consumed: 7.418s