Running as unit: rb-build-amd64_20-49800.service ==================================================================================== Sun Apr 27 12:18:55 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_20) on jenkins, called using "ionos15-amd64 ionos1-amd64" as arguments. Sun Apr 27 12:18:55 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-v3KMuJ2H" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Apr 27 12:18:55 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sun Apr 27 12:18:55 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-pEgzTD' Sun Apr 27 12:18:56 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sun Apr 27 12:18:56 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-z7JorU' ok, let's check if seqmagick is building anywhere yet… ok, seqmagick is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of seqmagick in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Sun Apr 27 12:19:11 UTC 2025 I: starting to build seqmagick/unstable/amd64 on jenkins on '2025-04-27 12:18' Sun Apr 27 12:19:11 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_20/49800/console.log 1745756351 amd64 unstable seqmagick Sun Apr 27 12:19:11 UTC 2025 I: Downloading source for unstable/seqmagick=0.8.6-3 --2025-04-27 12:19:11-- http://deb.debian.org/debian/pool/main/s/seqmagick/seqmagick_0.8.6-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2262 (2.2K) [text/prs.lines.tag] Saving to: ‘seqmagick_0.8.6-3.dsc’ 0K .. 100% 362M=0s 2025-04-27 12:19:11 (362 MB/s) - ‘seqmagick_0.8.6-3.dsc’ saved [2262/2262] --2025-04-27 12:19:11-- http://deb.debian.org/debian/pool/main/s/seqmagick/seqmagick_0.8.6-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2262 (2.2K) [text/prs.lines.tag] Saving to: ‘seqmagick_0.8.6-3.dsc’ 0K .. 100% 362M=0s 2025-04-27 12:19:11 (362 MB/s) - ‘seqmagick_0.8.6-3.dsc’ saved [2262/2262] Sun Apr 27 12:19:11 UTC 2025 I: seqmagick_0.8.6-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqmagick Binary: seqmagick Architecture: all Version: 0.8.6-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/fhcrc/seqmagick/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/seqmagick Vcs-Git: https://salsa.debian.org/med-team/seqmagick.git Testsuite: autopkgtest, autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-pytest , python3-biopython, python3-pygtrie Package-List: seqmagick deb science optional arch=all Checksums-Sha1: d4235a62684b2bcd3cd5987cde946db127b50ef4 664548 seqmagick_0.8.6.orig.tar.gz f46d7c559f986ec87ad0e21ceb21ebe47f9b3aec 6012 seqmagick_0.8.6-3.debian.tar.xz Checksums-Sha256: 83a83bbbf76eae756e96470075b729f2ae78a017a9432330133c6f94d9d49cba 664548 seqmagick_0.8.6.orig.tar.gz 50115b409644ade48c176a6c3b80189263756f315a66cf024365e3fe7d8dbd38 6012 seqmagick_0.8.6-3.debian.tar.xz Files: ce0227e287a5fb54ac8312a3a4a54403 664548 seqmagick_0.8.6.orig.tar.gz e132a2b0dc649c2f4042bf9065b2cf0e 6012 seqmagick_0.8.6-3.debian.tar.xz Dgit: 22b5585dbbd9ffd0d12c812cfe3c8df78cc039aa debian archive/debian/0.8.6-3 https://git.dgit.debian.org/seqmagick -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmayhKEUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrFaw//ZuiU4lRQ18uCafgiXtEShFo6A4Kc i2sqwG2pJ+PPCO7YN5mZ5qWuUtATlkGdgaIYp+BD0RBuBNyeijeAzxF2TWYgcK84 7Igr7wyXAgQQp67QYzjqWKP6EEttFcK4l54kSSwy7Asl8EMHeq0ov/50X+tm142e dyZqSWPNJJ8SOw1LkMAlPH5F2p+2OR0SsVgorQ39NsNwnSzpYDvz3Kok/N+Fc28x d3a3qVw+1RUrvefbbO1cG8Uuz0wmbPJs/f/vR738ynsszLHccqRw1ptLTwKMrCfM 3e7KTuVZJQrl35RLU4Rj9poIwfRZempZItH89vk3OnbN3TregjS98gaibxkN+3ZV 3Wssg6BFJVmIPymcvMGz/8QyZOcEKilx02dotyOkBRcG6ljR7V/14znAv1PZJtXH oI4LzwAz6dRAblqZ0RjFLHDGYkH/PCmJx3JWKnIltH9SUQujIGvHu3UdAUOcvbtd 8gt52eCi+CpntgIdoarbdXaihreXMsCstjdQMDQ+UhRVQCmxbDxy4qF75cpUF9RB r92zDfa0V5zM8KU4l5huIcUCnJt8H2/W5FDPiWNjBQReN0rqL6BWFlkdvYzswoIU vzWOq1VcFgL0/fk2aaDLMr8C6T1/cuGlVLCn1K+13WXYMEBiXLi99JMCafTC6BAi LJUUfN/mycqj9b0= =xtMr -----END PGP SIGNATURE----- Sun Apr 27 12:19:11 UTC 2025 I: Checking whether the package is not for us Sun Apr 27 12:19:11 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sun Apr 27 12:19:11 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sun Apr 27 12:19:11 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sun Apr 27 12:19:11 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-hflgJs' ==================================================================================== Sat May 30 18:42:12 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 seqmagick unstable /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr 0.8.6-3" as arguments. Sat May 30 18:42:12 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-EdY3iFGB" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat May 30 18:42:12 UTC 2026 I: Downloading source for unstable/seqmagick=0.8.6-3 Reading package lists... NOTICE: 'seqmagick' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqmagick.git Please use: git clone https://salsa.debian.org/med-team/seqmagick.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 673 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (dsc) [2262 B] Get:2 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (tar) [665 kB] Get:3 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (diff) [6012 B] Fetched 673 kB in 0s (17.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'seqmagick' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqmagick.git Please use: git clone https://salsa.debian.org/med-team/seqmagick.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 673 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (dsc) [2262 B] Get:2 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (tar) [665 kB] Get:3 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (diff) [6012 B] Fetched 673 kB in 0s (17.8 MB/s) Download complete and in download only mode ============================================================================= Building seqmagick in unstable on amd64 on ionos15-amd64 now. Date: Sat May 30 18:42:13 UTC 2026 Date UTC: Sat May 30 18:42:13 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat May 30 06:42:13 -12 2026 I: pbuilder-time-stamp: 1780166533 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqmagick_0.8.6-3.dsc] I: copying [./seqmagick_0.8.6.orig.tar.gz] I: copying [./seqmagick_0.8.6-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqmagick_0.8.6-3.dsc: unsupported subcommand dpkg-source: info: extracting seqmagick in seqmagick-0.8.6 dpkg-source: info: unpacking seqmagick_0.8.6.orig.tar.gz dpkg-source: info: unpacking seqmagick_0.8.6-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying biopython_1.71_dual_coding_support.patch dpkg-source: info: applying pytest.patch dpkg-source: info: applying replace-ungap.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3394556/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='373d2a2eff9d432da0a4f6fe6099c490' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3394556' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/pbuilderrc_V2Ki --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b1 --logfile b1/build.log seqmagick_0.8.6-3.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3394556/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-pytest, python3-biopython, python3-pygtrie dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pygtrie; however: Package python3-pygtrie is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygtrie{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 53.2 MB of archives. After unpacking 183 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.3-2 [861 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.3-2 [2212 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.3-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.3-2 [1953 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.3-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.3-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 60 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.1-2 [1514 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.3-1 [1048 B] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.0-1.2 [224 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.0-1.2 [738 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pygtrie all 2.2-3 [17.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.5-2 [250 kB] Fetched 53.2 MB in 1s (57.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.3-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-2_amd64.deb ... Unpacking python3.13-minimal (3.13.3-2) ... Setting up libpython3.13-minimal:amd64 (3.13.3-2) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20173 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.3-1_amd64.deb ... Unpacking python3-minimal (3.13.3-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_amd64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.3-1) ... Setting up python3-minimal (3.13.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21185 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.3-1_amd64.deb ... Unpacking python3 (3.13.3-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_14.2.0-19_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-19) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../008-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../014-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../027-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../029-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package dh-python. Preparing to unpack .../035-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../036-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../037-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../038-libfontenc1_1%3a1.1.8-1+b2_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1+b2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../039-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../040-libpng16-16t64_1.6.47-1.1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.47-1.1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../041-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../042-x11-common_1%3a7.7+24_all.deb ... Unpacking x11-common (1:7.7+24) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../043-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../044-xfonts-utils_1%3a7.7+7_amd64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../045-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../046-fontconfig-config_2.15.0-2.3_amd64.deb ... Unpacking fontconfig-config (2.15.0-2.3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../047-libfontconfig1_2.15.0-2.3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-2.3) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../048-libpixman-1-0_0.44.0-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.44.0-3) ... Selecting previously unselected package libxau6:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqmagick-0.8.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqmagick_0.8.6-3_source.changes dpkg-buildpackage: info: source package seqmagick dpkg-buildpackage: info: source version 0.8.6-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' mkdir -p seqmagick/data echo 0.8.6 > seqmagick/data/ver make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' mkdir -p seqmagick/data rm -rf seqmagick/data rm -rf seqmagick.egg-info make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules execute_before_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' mkdir -p seqmagick/data echo 0.8.6 > seqmagick/data/ver make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts copying seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts copying seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data copying seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data copying seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/seqmagick-0.8.6 plugins: typeguard-4.4.2 collected 154 items seqmagick/test/integration/test_convert.py .ss.............. [ 11%] seqmagick/test/integration/test_extract_ids.py ..ss.. [ 14%] seqmagick/test/integration/test_info.py ...s [ 17%] seqmagick/test/integration/test_mogrify.py .s. [ 19%] seqmagick/test/test_subcommands_backtrans_align.py ......... [ 25%] seqmagick/test/test_subcommands_common.py ..................s..... [ 40%] seqmagick/test/test_subcommands_convert.py ...... [ 44%] seqmagick/test/test_subcommands_quality_filter.py ...................... [ 59%] .... [ 61%] seqmagick/test/test_transform.py ....................................... [ 87%] .................... [100%] ======================== 147 passed, 7 skipped in 1.07s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/seqmagick/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data running install_lib creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/fileformat.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/transform.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_backtrans_align.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_common.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_transform.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_quality_filter.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_extract_ids.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_info.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_mogrify.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/extract_ids.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/quality_filter.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/mogrify.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/info.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/backtrans_align.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/convert.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/fileformat.py to fileformat.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_quality_filter.py to test_subcommands_quality_filter.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_convert.py to test_subcommands_convert.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_backtrans_align.py to test_subcommands_backtrans_align.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_transform.py to test_transform.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_mogrify.py to test_mogrify.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_extract_ids.py to test_extract_ids.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_convert.py to test_convert.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_info.py to test_info.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_common.py to test_subcommands_common.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/transform.py to transform.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/convert.py to convert.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/backtrans_align.py to backtrans_align.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/info.py to info.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/mogrify.py to mogrify.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/extract_ids.py to extract_ids.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/quality_filter.py to quality_filter.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating seqmagick.egg-info writing seqmagick.egg-info/PKG-INFO writing dependency_links to seqmagick.egg-info/dependency_links.txt writing entry points to seqmagick.egg-info/entry_points.txt writing requirements to seqmagick.egg-info/requires.txt writing top-level names to seqmagick.egg-info/top_level.txt writing manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.png' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'seqmagick.egg-info/SOURCES.txt' Copying seqmagick.egg-info to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick-0.8.6.egg-info Skipping SOURCES.txt running install_scripts Installing seqmagick script to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/seqmagick/usr/bin/seqmagick dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'seqmagick' in '../seqmagick_0.8.6-3_all.deb'. dpkg-genbuildinfo --build=binary -O../seqmagick_0.8.6-3_amd64.buildinfo dpkg-genchanges --build=binary -O../seqmagick_0.8.6-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3394556 and its subdirectories I: Current time: Sat May 30 06:46:05 -12 2026 I: pbuilder-time-stamp: 1780166765 Sat May 30 18:46:05 UTC 2026 I: Signing ./b1/seqmagick_0.8.6-3_amd64.buildinfo as seqmagick_0.8.6-3_amd64.buildinfo.asc Sat May 30 18:46:05 UTC 2026 I: Signed ./b1/seqmagick_0.8.6-3_amd64.buildinfo as ./b1/seqmagick_0.8.6-3_amd64.buildinfo.asc Sat May 30 18:46:05 UTC 2026 - build #1 for seqmagick/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Sat May 30 18:46:05 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-EdY3iFGB, removing. /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 27 12:23 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 27 12:19 b2 -rw------- 1 jenkins jenkins 3378 Apr 27 12:19 rbuildlog.dNF76sk -rw-r--r-- 1 jenkins jenkins 2262 Aug 6 2024 seqmagick_0.8.6-3.dsc /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b1: total 164 -rw-r--r-- 1 jenkins jenkins 89167 Apr 27 12:23 build.log -rw-r--r-- 1 jenkins jenkins 6012 Apr 27 12:23 seqmagick_0.8.6-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2262 Apr 27 12:23 seqmagick_0.8.6-3.dsc -rw-r--r-- 1 jenkins jenkins 40104 Apr 27 12:23 seqmagick_0.8.6-3_all.deb -rw-r--r-- 1 jenkins jenkins 7208 Apr 27 12:23 seqmagick_0.8.6-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8090 Apr 27 12:23 seqmagick_0.8.6-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1250 Apr 27 12:23 seqmagick_0.8.6-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1418 Apr 27 12:23 seqmagick_0.8.6-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b2: total 0 Sun Apr 27 12:23:05 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 30 06:42:13 -12 2026 I: pbuilder-time-stamp: 1780166533 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqmagick_0.8.6-3.dsc] I: copying [./seqmagick_0.8.6.orig.tar.gz] I: copying [./seqmagick_0.8.6-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqmagick_0.8.6-3.dsc: unsupported subcommand dpkg-source: info: extracting seqmagick in seqmagick-0.8.6 dpkg-source: info: unpacking seqmagick_0.8.6.orig.tar.gz dpkg-source: info: unpacking seqmagick_0.8.6-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying biopython_1.71_dual_coding_support.patch dpkg-source: info: applying pytest.patch dpkg-source: info: applying replace-ungap.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3394556/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='373d2a2eff9d432da0a4f6fe6099c490' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3394556' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/pbuilderrc_V2Ki --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b1 --logfile b1/build.log seqmagick_0.8.6-3.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3394556/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-pytest, python3-biopython, python3-pygtrie dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pygtrie; however: Package python3-pygtrie is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygtrie{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 53.2 MB of archives. After unpacking 183 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.3-2 [861 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.3-2 [2212 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.3-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.3-2 [1953 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.3-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.3-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 60 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.1-2 [1514 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.3-1 [1048 B] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.0-1.2 [224 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.0-1.2 [738 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pygtrie all 2.2-3 [17.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.5-2 [250 kB] Fetched 53.2 MB in 1s (57.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.3-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... 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Selecting previously unselected package python3-pytest. Preparing to unpack .../102-python3-pytest_8.3.5-2_all.deb ... Unpacking python3-pytest (8.3.5-2) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up file (1:5.46-5) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat May 30 18:43:53 UTC 2026. Universal Time is now: Sat May 30 18:43:53 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3.1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.47-1.1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up autoconf (2.72-3.1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libtiff6:amd64 (4.7.0-3) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libopenjp2-7:amd64 (2.5.3-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-4) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:amd64 (2.84.1-2) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libpython3.13-stdlib:amd64 (3.13.3-2) ... Setting up libpython3-stdlib:amd64 (3.13.3-1) ... Setting up python3.13 (3.13.3-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.3-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3-pygtrie (2.2-3) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-all (3.13.3-1) ... Setting up debhelper (13.24.2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.3.1-1) ... Setting up python3-pkg-resources (78.1.0-1.2) ... Setting up python3-setuptools (78.1.0-1.2) ... Processing triggers for libc-bin (2.41-7) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqmagick-0.8.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqmagick_0.8.6-3_source.changes dpkg-buildpackage: info: source package seqmagick dpkg-buildpackage: info: source version 0.8.6-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' mkdir -p seqmagick/data echo 0.8.6 > seqmagick/data/ver make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' mkdir -p seqmagick/data rm -rf seqmagick/data rm -rf seqmagick.egg-info make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules execute_before_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' mkdir -p seqmagick/data echo 0.8.6 > seqmagick/data/ver make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts copying seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts copying seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data copying seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data copying seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/seqmagick-0.8.6 plugins: typeguard-4.4.2 collected 154 items seqmagick/test/integration/test_convert.py .ss.............. [ 11%] seqmagick/test/integration/test_extract_ids.py ..ss.. [ 14%] seqmagick/test/integration/test_info.py ...s [ 17%] seqmagick/test/integration/test_mogrify.py .s. [ 19%] seqmagick/test/test_subcommands_backtrans_align.py ......... [ 25%] seqmagick/test/test_subcommands_common.py ..................s..... [ 40%] seqmagick/test/test_subcommands_convert.py ...... [ 44%] seqmagick/test/test_subcommands_quality_filter.py ...................... [ 59%] .... [ 61%] seqmagick/test/test_transform.py ....................................... [ 87%] .................... [100%] ======================== 147 passed, 7 skipped in 1.07s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/seqmagick/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data running install_lib creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/fileformat.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/transform.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_backtrans_align.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_common.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_transform.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_quality_filter.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_extract_ids.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_info.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_mogrify.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/extract_ids.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/quality_filter.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/mogrify.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/info.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/backtrans_align.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/convert.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/fileformat.py to fileformat.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_quality_filter.py to test_subcommands_quality_filter.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_convert.py to test_subcommands_convert.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_backtrans_align.py to test_subcommands_backtrans_align.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_transform.py to test_transform.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_mogrify.py to test_mogrify.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_extract_ids.py to test_extract_ids.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_convert.py to test_convert.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_info.py to test_info.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_common.py to test_subcommands_common.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/transform.py to transform.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/convert.py to convert.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/backtrans_align.py to backtrans_align.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/info.py to info.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/mogrify.py to mogrify.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/extract_ids.py to extract_ids.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/quality_filter.py to quality_filter.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating seqmagick.egg-info writing seqmagick.egg-info/PKG-INFO writing dependency_links to seqmagick.egg-info/dependency_links.txt writing entry points to seqmagick.egg-info/entry_points.txt writing requirements to seqmagick.egg-info/requires.txt writing top-level names to seqmagick.egg-info/top_level.txt writing manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.png' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'seqmagick.egg-info/SOURCES.txt' Copying seqmagick.egg-info to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick-0.8.6.egg-info Skipping SOURCES.txt running install_scripts Installing seqmagick script to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/seqmagick/usr/bin/seqmagick dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'seqmagick' in '../seqmagick_0.8.6-3_all.deb'. dpkg-genbuildinfo --build=binary -O../seqmagick_0.8.6-3_amd64.buildinfo dpkg-genchanges --build=binary -O../seqmagick_0.8.6-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3394556 and its subdirectories I: Current time: Sat May 30 06:46:05 -12 2026 I: pbuilder-time-stamp: 1780166765 Sun Apr 27 12:23:06 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sun Apr 27 12:23:06 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sun Apr 27 12:23:06 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sun Apr 27 12:23:06 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-SSBBnt' ==================================================================================== Sun Apr 27 12:23:08 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "2 seqmagick unstable /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr 0.8.6-3" as arguments. Sun Apr 27 12:23:08 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-dY915HCe" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Apr 27 12:23:09 UTC 2025 I: Downloading source for unstable/seqmagick=0.8.6-3 Reading package lists... NOTICE: 'seqmagick' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqmagick.git Please use: git clone https://salsa.debian.org/med-team/seqmagick.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 673 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (dsc) [2262 B] Get:2 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (tar) [665 kB] Get:3 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (diff) [6012 B] Fetched 673 kB in 0s (10.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'seqmagick' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqmagick.git Please use: git clone https://salsa.debian.org/med-team/seqmagick.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 673 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (dsc) [2262 B] Get:2 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (tar) [665 kB] Get:3 http://deb.debian.org/debian unstable/main seqmagick 0.8.6-3 (diff) [6012 B] Fetched 673 kB in 0s (10.3 MB/s) Download complete and in download only mode ============================================================================= Re-Building seqmagick in unstable on amd64 on ionos1-amd64 now. Date: Sun Apr 27 12:23:09 UTC 2025 Date UTC: Sun Apr 27 12:23:09 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/pbuilderrc_EoFs + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' seqmagick = debian-installer -o seqmagick = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' seqmagick = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/pbuilderrc_EoFs --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b2 --logfile b2/build.log seqmagick_0.8.6-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 28 02:23:09 +14 2025 I: pbuilder-time-stamp: 1745756589 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqmagick_0.8.6-3.dsc] I: copying [./seqmagick_0.8.6.orig.tar.gz] I: copying [./seqmagick_0.8.6-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqmagick_0.8.6-3.dsc: unsupported subcommand dpkg-source: info: extracting seqmagick in seqmagick-0.8.6 dpkg-source: info: unpacking seqmagick_0.8.6.orig.tar.gz dpkg-source: info: unpacking seqmagick_0.8.6-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying biopython_1.71_dual_coding_support.patch dpkg-source: info: applying pytest.patch dpkg-source: info: applying replace-ungap.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 27 12:23 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=9573f301e5ed49cfba0ad31037eb55b6 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1904420 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/pbuilderrc_EoFs --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b2 --logfile b2/build.log seqmagick_0.8.6-3.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-pytest, python3-biopython, python3-pygtrie dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pygtrie; however: Package python3-pygtrie is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygtrie{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 53.2 MB of archives. After unpacking 183 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.3-2 [861 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.3-2 [2212 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.3-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.3-2 [1953 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.3-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.3-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 60 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.1-2 [1514 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.3-1 [1048 B] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.0-1.2 [224 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.0-1.2 [738 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pygtrie all 2.2-3 [17.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.5-2 [250 kB] Fetched 53.2 MB in 5s (10.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.3-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-2_amd64.deb ... Unpacking python3.13-minimal (3.13.3-2) ... Setting up libpython3.13-minimal:amd64 (3.13.3-2) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20173 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.3-1_amd64.deb ... Unpacking python3-minimal (3.13.3-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_amd64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.3-1) ... Setting up python3-minimal (3.13.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21185 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.3-1_amd64.deb ... Unpacking python3 (3.13.3-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_14.2.0-19_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-19) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../008-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../014-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 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Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up file (1:5.46-5) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Apr 27 12:24:43 UTC 2025. Universal Time is now: Sun Apr 27 12:24:43 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3.1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.47-1.1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up autoconf (2.72-3.1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libtiff6:amd64 (4.7.0-3) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libopenjp2-7:amd64 (2.5.3-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-4) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:amd64 (2.84.1-2) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libpython3.13-stdlib:amd64 (3.13.3-2) ... Setting up libpython3-stdlib:amd64 (3.13.3-1) ... Setting up python3.13 (3.13.3-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.3-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3-pygtrie (2.2-3) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-all (3.13.3-1) ... Setting up debhelper (13.24.2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.3.1-1) ... Setting up python3-pkg-resources (78.1.0-1.2) ... Setting up python3-setuptools (78.1.0-1.2) ... Processing triggers for libc-bin (2.41-7) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/seqmagick-0.8.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqmagick_0.8.6-3_source.changes dpkg-buildpackage: info: source package seqmagick dpkg-buildpackage: info: source version 0.8.6-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' mkdir -p seqmagick/data echo 0.8.6 > seqmagick/data/ver make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' mkdir -p seqmagick/data rm -rf seqmagick/data rm -rf seqmagick.egg-info make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules execute_before_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/seqmagick-0.8.6' mkdir -p seqmagick/data echo 0.8.6 > seqmagick/data/ver make[1]: Leaving directory '/build/reproducible-path/seqmagick-0.8.6' dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts copying seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts copying seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test copying seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data copying seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data copying seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/seqmagick-0.8.6 plugins: typeguard-4.4.2 collected 154 items seqmagick/test/integration/test_convert.py .ss.............. [ 11%] seqmagick/test/integration/test_extract_ids.py ..ss.. [ 14%] seqmagick/test/integration/test_info.py ...s [ 17%] seqmagick/test/integration/test_mogrify.py .s. [ 19%] seqmagick/test/test_subcommands_backtrans_align.py ......... [ 25%] seqmagick/test/test_subcommands_common.py ..................s..... [ 40%] seqmagick/test/test_subcommands_convert.py ...... [ 44%] seqmagick/test/test_subcommands_quality_filter.py ...................... [ 59%] .... [ 61%] seqmagick/test/test_transform.py ....................................... [ 87%] .................... [100%] ======================== 147 passed, 7 skipped in 0.73s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/seqmagick/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data running install_lib creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/quality_filter.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/mogrify.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/info.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/backtrans_align.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/extract_ids.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/convert.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/fileformat.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/transform.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_extract_ids.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_info.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_mogrify.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_quality_filter.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_backtrans_align.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_common.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_transform.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/quality_filter.py to quality_filter.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/backtrans_align.py to backtrans_align.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/extract_ids.py to extract_ids.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/info.py to info.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/mogrify.py to mogrify.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/convert.py to convert.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/fileformat.py to fileformat.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/transform.py to transform.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_extract_ids.py to test_extract_ids.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_info.py to test_info.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_convert.py to test_convert.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_mogrify.py to test_mogrify.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_backtrans_align.py to test_subcommands_backtrans_align.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_common.py to test_subcommands_common.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_transform.py to test_transform.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_quality_filter.py to test_subcommands_quality_filter.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_convert.py to test_subcommands_convert.cpython-313.pyc running install_egg_info running egg_info creating seqmagick.egg-info writing seqmagick.egg-info/PKG-INFO writing dependency_links to seqmagick.egg-info/dependency_links.txt writing entry points to seqmagick.egg-info/entry_points.txt writing requirements to seqmagick.egg-info/requires.txt writing top-level names to seqmagick.egg-info/top_level.txt writing manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.png' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'seqmagick.egg-info/SOURCES.txt' Copying seqmagick.egg-info to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick-0.8.6.egg-info Skipping SOURCES.txt running install_scripts Installing seqmagick script to /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/seqmagick/usr/bin/seqmagick dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'seqmagick' in '../seqmagick_0.8.6-3_all.deb'. dpkg-genbuildinfo --build=binary -O../seqmagick_0.8.6-3_amd64.buildinfo dpkg-genchanges --build=binary -O../seqmagick_0.8.6-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1904420 and its subdirectories I: Current time: Mon Apr 28 02:25:43 +14 2025 I: pbuilder-time-stamp: 1745756743 + false + set +x Sun Apr 27 12:25:43 UTC 2025 I: Signing ./b2/seqmagick_0.8.6-3_amd64.buildinfo as seqmagick_0.8.6-3_amd64.buildinfo.asc Sun Apr 27 12:25:43 UTC 2025 I: Signed ./b2/seqmagick_0.8.6-3_amd64.buildinfo as ./b2/seqmagick_0.8.6-3_amd64.buildinfo.asc Sun Apr 27 12:25:43 UTC 2025 - build #2 for seqmagick/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Sun Apr 27 12:25:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-dY915HCe, removing. /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr: total 108 drwxr-xr-x 2 jenkins jenkins 4096 Apr 27 12:23 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 27 12:25 b2 -rw------- 1 jenkins jenkins 92832 Apr 27 12:23 rbuildlog.dNF76sk -rw-r--r-- 1 jenkins jenkins 2262 Aug 6 2024 seqmagick_0.8.6-3.dsc /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b1: total 168 -rw-r--r-- 1 jenkins jenkins 89167 Apr 27 12:23 build.log -rw-r--r-- 1 jenkins jenkins 6012 Apr 27 12:23 seqmagick_0.8.6-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2262 Apr 27 12:23 seqmagick_0.8.6-3.dsc -rw-r--r-- 1 jenkins jenkins 40104 Apr 27 12:23 seqmagick_0.8.6-3_all.deb -rw-r--r-- 1 jenkins jenkins 7208 Apr 27 12:23 seqmagick_0.8.6-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8090 Apr 27 12:23 seqmagick_0.8.6-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1250 Apr 27 12:23 seqmagick_0.8.6-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1418 Apr 27 12:23 seqmagick_0.8.6-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b2: total 168 -rw-r--r-- 1 jenkins jenkins 91085 Apr 27 12:25 build.log -rw-r--r-- 1 jenkins jenkins 6012 Apr 27 12:25 seqmagick_0.8.6-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2262 Apr 27 12:25 seqmagick_0.8.6-3.dsc -rw-r--r-- 1 jenkins jenkins 40104 Apr 27 12:25 seqmagick_0.8.6-3_all.deb -rw-r--r-- 1 jenkins jenkins 7197 Apr 27 12:25 seqmagick_0.8.6-3_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8079 Apr 27 12:25 seqmagick_0.8.6-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1250 Apr 27 12:25 seqmagick_0.8.6-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1418 Apr 27 12:25 seqmagick_0.8.6-3_source.changes Sun Apr 27 12:25:43 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sun Apr 27 12:25:44 UTC 2025 I: seqmagick_0.8.6-3_amd64.changes: Format: 1.8 Date: Tue, 06 Aug 2024 22:05:39 +0200 Source: seqmagick Binary: seqmagick Architecture: all Version: 0.8.6-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: seqmagick - imagemagick-like frontend to Biopython SeqIO Closes: 1077409 Changes: seqmagick (0.8.6-3) unstable; urgency=medium . * d/rules: workaround upstream __version__ setting. The original setup.py code uses git, but this is not available in the build environment. (Closes: #1077409) * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: a046c0f2466ce10fc37f78c37e1c9e1368eb5db4 40104 seqmagick_0.8.6-3_all.deb 8733e6af4c0eee2826e0f45bc2f79bde073eac44 7208 seqmagick_0.8.6-3_amd64.buildinfo Checksums-Sha256: 8d119fc9fc5b7463aa0f5c0a0144123b53c1148432c930a49f14b587753c8c24 40104 seqmagick_0.8.6-3_all.deb 68b3710dfa12c5465645d5cfa2f15a48e678516746b26b6a58c10d92ed7e3643 7208 seqmagick_0.8.6-3_amd64.buildinfo Files: ea72f9a6835a77a157b4576fa3d09a91 40104 science optional seqmagick_0.8.6-3_all.deb 90e127f78720c68869000328e0c32cad 7208 science optional seqmagick_0.8.6-3_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/seqmagick_0.8.6-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/seqmagick_0.8.6-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/seqmagick_0.8.6-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/seqmagick_0.8.6-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/seqmagick_0.8.6-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/seqmagick_0.8.6-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-27 12:23:05.834284002 +0000 +++ b2/build.log 2025-04-27 12:25:43.542832985 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 30 06:42:13 -12 2026 -I: pbuilder-time-stamp: 1780166533 +I: Current time: Mon Apr 28 02:23:09 +14 2025 +I: pbuilder-time-stamp: 1745756589 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying replace-ungap.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3394556/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 27 12:23 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='373d2a2eff9d432da0a4f6fe6099c490' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3394556' - PS1='# ' - PS2='> ' + INVOCATION_ID=9573f301e5ed49cfba0ad31037eb55b6 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1904420 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/pbuilderrc_V2Ki --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b1 --logfile b1/build.log seqmagick_0.8.6-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/pbuilderrc_EoFs --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b2 --logfile b2/build.log seqmagick_0.8.6-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3394556/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -235,7 +267,7 @@ Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pygtrie all 2.2-3 [17.1 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.5-2 [250 kB] -Fetched 53.2 MB in 1s (57.4 MB/s) +Fetched 53.2 MB in 5s (10.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) @@ -626,8 +658,8 @@ Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat May 30 18:43:53 UTC 2026. -Universal Time is now: Sat May 30 18:43:53 UTC 2026. +Local time is now: Sun Apr 27 12:24:43 UTC 2025. +Universal Time is now: Sun Apr 27 12:24:43 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... @@ -732,7 +764,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqmagick-0.8.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqmagick_0.8.6-3_source.changes +I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqmagick-0.8.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqmagick_0.8.6-3_source.changes dpkg-buildpackage: info: source package seqmagick dpkg-buildpackage: info: source version 0.8.6-3 dpkg-buildpackage: info: source distribution unstable @@ -855,52 +891,52 @@ copying seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick copying seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick -creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test -copying seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test -copying seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test -copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test -copying seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test -copying seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test -copying seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test -creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts -copying seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts -copying seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands -copying seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands +copying seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands +copying seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands +copying seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands copying seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands -copying seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands -copying seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands -copying seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands +copying seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands +creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts +copying seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts +copying seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts +creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test +copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test +copying seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test +copying seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test +copying seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test +copying seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test +copying seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration -copying seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration +copying seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration copying seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration -copying seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration +copying seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data creating /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data copying seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data -copying seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data -copying seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data +copying seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data -copying seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data -copying seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data -copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data -copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data -copying seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data -copying seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data -copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data -copying seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build; python3.13 -m pytest ============================= test session starts ============================== @@ -921,7 +957,7 @@ seqmagick/test/test_transform.py ....................................... [ 87%] .................... [100%] -======================== 147 passed, 7 skipped in 1.07s ======================== +======================== 147 passed, 7 skipped in 0.73s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -972,109 +1008,109 @@ running install_lib creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick +creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands +creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/quality_filter.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/mogrify.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/info.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/backtrans_align.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/extract_ids.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/convert.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/fileformat.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/transform.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ -creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/fileformat.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick +creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts +creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test -creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_backtrans_align.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_common.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_transform.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_quality_filter.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_extract_ids.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_info.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_mogrify.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/test_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.phy -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta.gz -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output3.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input6.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input3.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input1.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input2.fasta.bz2 -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input5.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/input4_ambig.fasta -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/data/output4.nex -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/integration/test_info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test +creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_quality_filter.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_backtrans_align.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_common.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_transform.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/test_subcommands_convert.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__pycache__ copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick -creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/cli.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts -creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/scripts/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts -creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/common.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands -creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/extract_ids.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/quality_filter.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/mogrify.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/info.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/backtrans_align.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__pycache__/convert.cpython-313.pyc -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__pycache__ -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/backtrans_align.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/info.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/mogrify.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/extract_ids.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/subcommands/quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands -copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/fileformat.py to fileformat.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_quality_filter.py to test_subcommands_quality_filter.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_convert.py to test_subcommands_convert.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_backtrans_align.py to test_subcommands_backtrans_align.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_transform.py to test_transform.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_mogrify.py to test_mogrify.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_extract_ids.py to test_extract_ids.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_convert.py to test_convert.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_info.py to test_info.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_common.py to test_subcommands_common.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/transform.py to transform.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/cli.py to cli.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/convert.py to convert.cpython-313.pyc +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_transform.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_quality_filter.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/__init__.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/test/test_subcommands_convert.py -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test +creating /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data +copying /build/reproducible-path/seqmagick-0.8.6/.pybuild/cpython3_3.13/build/seqmagick/data/ver -> /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/data byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/common.py to common.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/quality_filter.py to quality_filter.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/backtrans_align.py to backtrans_align.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/extract_ids.py to extract_ids.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/info.py to info.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/mogrify.py to mogrify.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/extract_ids.py to extract_ids.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/quality_filter.py to quality_filter.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/subcommands/convert.py to convert.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/fileformat.py to fileformat.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/transform.py to transform.cpython-313.pyc byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/scripts/cli.py to cli.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_extract_ids.py to test_extract_ids.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_info.py to test_info.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_convert.py to test_convert.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/data/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/integration/test_mogrify.py to test_mogrify.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_backtrans_align.py to test_subcommands_backtrans_align.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_common.py to test_subcommands_common.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_transform.py to test_transform.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_quality_filter.py to test_subcommands_quality_filter.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/seqmagick-0.8.6/debian/seqmagick/usr/lib/python3.13/dist-packages/seqmagick/test/test_subcommands_convert.py to test_subcommands_convert.cpython-313.pyc running install_egg_info running egg_info creating seqmagick.egg-info @@ -1122,12 +1158,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1904420/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3394556 and its subdirectories -I: Current time: Sat May 30 06:46:05 -12 2026 -I: pbuilder-time-stamp: 1780166765 +I: removing directory /srv/workspace/pbuilder/1904420 and its subdirectories +I: Current time: Mon Apr 28 02:25:43 +14 2025 +I: pbuilder-time-stamp: 1745756743 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/seqmagick_0.8.6-3.diff: 91.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/seqmagick_0.8.6-3.diff.gz b2/build.log: 85.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 86.4% -- replaced with stdout Sun Apr 27 12:25:44 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_seqmagick_unstable_amd64_1745756745 + touch /var/log/reproducible-builds/diffoscope_stamp_seqmagick_unstable_amd64_1745756745 + RESULT=0 + systemd-run '--description=diffoscope on seqmagick/0.8.6-3 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_20-49800 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr --run-session -c jenkins-reproducible-unstable-diffoscope-69005e36-d3d7-4ee1-87cc-84e1f22a11aa -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/dbd-tmp-ULj481v ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/seqmagick_0.8.6-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/seqmagick_0.8.6-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/seqmagick_0.8.6-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b1/seqmagick_0.8.6-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b2/seqmagick_0.8.6-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_20-49800.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/seqmagick_0.8.6-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/seqmagick_0.8.6-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/seqmagick_0.8.6-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b1/seqmagick_0.8.6-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.657OWlqr/b2/seqmagick_0.8.6-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 224ms CPU time consumed: 225ms _ _ ___ ___ __ _ _ __ ___ __ _ __ _(_) ___| | __ / __|/ _ \/ _` | '_ ` _ \ / _` |/ _` | |/ __| |/ / \__ \ __/ (_| | | | | | | (_| | (_| | | (__| < |___/\___|\__, |_| |_| |_|\__,_|\__, |_|\___|_|\_\ |_| |___/ Sun Apr 27 12:25:45 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 27 12:25:45 UTC 2025 I: seqmagick from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-27 12:25:46] INFO: Starting at 2025-04-27 12:25:46.064879 [2025-04-27 12:25:46] INFO: Generating the pages of 1 package(s) [2025-04-27 12:25:46] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/seqmagick didn't produce a buildlog, even though it has been built. [2025-04-27 12:25:46] INFO: Finished at 2025-04-27 12:25:46.439941, took: 0:00:00.375068 Sun Apr 27 12:25:46 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/seqmagick.html Sun Apr 27 12:25:46 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Apr 27 12:25:46 UTC 2025 I: Submitting 8.0K b1/seqmagick_0.8.6-3_amd64.buildinfo.asc https://buildinfo.debian.net/8733e6af4c0eee2826e0f45bc2f79bde073eac44/seqmagick_0.8.6-3_all Sun Apr 27 12:26:08 UTC 2025 I: Submitting 8.0K b2/seqmagick_0.8.6-3_amd64.buildinfo.asc https://buildinfo.debian.net/553192c131b0f7a95471b1e0f4a9edc4ae15f2e4/seqmagick_0.8.6-3_all Sun Apr 27 12:26:29 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 27 12:26:29 UTC 2025 I: Done submitting .buildinfo files. Sun Apr 27 12:26:29 UTC 2025 I: Removing signed seqmagick_0.8.6-3_amd64.buildinfo.asc files: removed './b1/seqmagick_0.8.6-3_amd64.buildinfo.asc' removed './b2/seqmagick_0.8.6-3_amd64.buildinfo.asc' 1745756789 amd64 unstable seqmagick Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/seqmagick_0.8.6-3.rbuild.log: 84.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/seqmagick_0.8.6-3.rbuild.log.gz [2025-04-27 12:26:29] INFO: Starting at 2025-04-27 12:26:29.501848 [2025-04-27 12:26:29] INFO: Generating the pages of 1 package(s) [2025-04-27 12:26:29] INFO: Finished at 2025-04-27 12:26:29.872748, took: 0:00:00.370906 All cleanup done. Sun Apr 27 12:26:29 UTC 2025 - total duration: 0h 6m 50s. Sun Apr 27 12:26:29 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-v3KMuJ2H, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 7min 34.155s CPU time consumed: 6.808s