Running as unit: rb-build-amd64_20-72922.service; invocation ID: 0414cdc4aaf2472287efc6173ba028b9 ==================================================================================== Thu Nov 6 20:19:52 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_20) on jenkins, called using "ionos15-amd64 ionos1-amd64" as arguments. Thu Nov 6 20:19:52 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-GZT48aP2" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 6 20:19:52 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Nov 6 20:19:52 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ycaaZD' Thu Nov 6 20:19:52 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Thu Nov 6 20:19:52 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-U6kNtQ' ok, let's check if isospec is building anywhere yet… ok, isospec is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of isospec in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Thu Nov 6 20:20:04 UTC 2025 I: starting to build isospec/unstable/amd64 on jenkins on '2025-11-06 20:19' Thu Nov 6 20:20:04 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_20/72922/console.log 1762460404 amd64 unstable isospec Thu Nov 6 20:20:04 UTC 2025 I: Downloading source for unstable/isospec=2.3.2-1 --2025-11-06 20:20:04-- http://deb.debian.org/debian/pool/main/i/isospec/isospec_2.3.2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2477 (2.4K) [text/prs.lines.tag] Saving to: ‘isospec_2.3.2-1.dsc’ 0K .. 100% 281M=0s 2025-11-06 20:20:04 (281 MB/s) - ‘isospec_2.3.2-1.dsc’ saved [2477/2477] --2025-11-06 20:20:04-- http://deb.debian.org/debian/pool/main/i/isospec/isospec_2.3.2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2477 (2.4K) [text/prs.lines.tag] Saving to: ‘isospec_2.3.2-1.dsc’ 0K .. 100% 281M=0s 2025-11-06 20:20:04 (281 MB/s) - ‘isospec_2.3.2-1.dsc’ saved [2477/2477] Thu Nov 6 20:20:04 UTC 2025 I: isospec_2.3.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: isospec Binary: libisospec++-dev, libisospec++2t64, python3-isospec, libisospec++-doc Architecture: any all Version: 2.3.2-1 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: https://github.com/MatteoLacki/IsoSpec Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/isospec Vcs-Git: https://salsa.debian.org/debichem-team/isospec.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), quilt, dh-exec, librsvg2-bin, cmake, d-shlibs, dh-python, python3-dev, python3-setuptools, pybuild-plugin-pyproject, python3-cffi, python3-scikit-build-core, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax Package-List: libisospec++-dev deb libdevel optional arch=any libisospec++-doc deb doc optional arch=all libisospec++2t64 deb libs optional arch=any python3-isospec deb python optional arch=any Checksums-Sha1: 7a054b349d296ab7a086d876d8b2ed595bcea378 2176151 isospec_2.3.2.orig.tar.gz 449bd5cce92f7e45def49d46ef71738dc9edddcb 33740 isospec_2.3.2-1.debian.tar.xz Checksums-Sha256: 3e6a5ea83f8ad95ecf4cb92c7021b3589fca36b835ac5c78d7c05b9c9e9c06ac 2176151 isospec_2.3.2.orig.tar.gz 6c70519171ebfe88d1c0300b9417a8b8b284f75ab4598709dbdfde5d2923f1d3 33740 isospec_2.3.2-1.debian.tar.xz Files: d0d65d7454a282a9288d37e90541d676 2176151 isospec_2.3.2.orig.tar.gz d1bfc0bd5eac107f9f49756151be17bb 33740 isospec_2.3.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAmkL1CIACgkQQatITXaU z0KP2w/9GAQ97PYXvkRslyqJTd5o+BOi4fsqKZtIr0l9uGnuIz4cdy6IB9DTpDOA +09GofCxLoVOtJw0mi1HxmSzZU7bx3U5X8t11xmRu4JsKVA/H3IyyOVie4WK8aeO 1hwy4uHhNzA+nhDv+2teW7NzLS9oXHuBkX72TbCihBUbbOzXoTkQevMDzshzyrYn nIJdkwG8dNazVGBMXx/wgQdleKFQGogo9vEPBvVw5uVpnEjEH6SnxLK7ykIbyWjT bgz5i+Cj/skpxm8HgwPPHFyP6QMQXtUkiwIV6B7k6sojRRtgvjxnb4hrcWxFpt7F PcHGu3XpG1FEnsD21BJFSHJiULCnuFTxczmhE6Fh0JF9YA73e0qGG9FdBoxAF7iX 8v0YM6xSps/8IaMCplT2vU1yjumJXfq+DqugrL9ONZ6unwNIghtUgpJfucu3VdRN 18M4+r9Nn3iabeMkevnDCTqvX/TEXxu1cMQ8eVxv1qK+XnJvq7CmDB0qqRPnUVDg niIb4IimfOnfBzclSSXUcoVsLP2sGiG2bBzh95mkhlDTK8FuoTnw7m7dLpr0dWP3 +WHZDP1smEEyZqlWUM0+Vapzbq3cxbT9xBCHu0L79p5uIs5pXVvFclDxaUqUYwn1 Kztrm6QhsgNQEn7lkyAujnlrimQM8/R+1KTXjw0L+I2v/NMSqP4= =iVF9 -----END PGP SIGNATURE----- Thu Nov 6 20:20:04 UTC 2025 I: Checking whether the package is not for us Thu Nov 6 20:20:04 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu Nov 6 20:20:04 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu Nov 6 20:20:04 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Thu Nov 6 20:20:04 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-sVQezQ' ==================================================================================== Thu Dec 10 02:43:05 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 isospec unstable /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO 2.3.2-1" as arguments. Thu Dec 10 02:43:05 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-0ShXUV5t" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 10 02:43:05 UTC 2026 I: Downloading source for unstable/isospec=2.3.2-1 Reading package lists... NOTICE: 'isospec' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/isospec.git Please use: git clone https://salsa.debian.org/debichem-team/isospec.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2212 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (dsc) [2477 B] Get:2 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (tar) [2176 kB] Get:3 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (diff) [33.7 kB] Fetched 2212 kB in 0s (51.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'isospec' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/isospec.git Please use: git clone https://salsa.debian.org/debichem-team/isospec.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2212 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (dsc) [2477 B] Get:2 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (tar) [2176 kB] Get:3 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (diff) [33.7 kB] Fetched 2212 kB in 0s (51.5 MB/s) Download complete and in download only mode ============================================================================= Building isospec in unstable on amd64 on ionos15-amd64 now. Date: Thu Dec 10 02:43:05 UTC 2026 Date UTC: Thu Dec 10 02:43:05 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 9 14:43:05 -12 2026 I: pbuilder-time-stamp: 1796870585 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [isospec_2.3.2-1.dsc] I: copying [./isospec_2.3.2.orig.tar.gz] I: copying [./isospec_2.3.2-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./isospec_2.3.2-1.dsc: no acceptable signature found dpkg-source: info: extracting isospec in isospec-2.3.2 dpkg-source: info: unpacking isospec_2.3.2.orig.tar.gz dpkg-source: info: unpacking isospec_2.3.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying library-version.patch dpkg-source: info: applying header-file-inclusion.patch dpkg-source: info: applying disable-pdf-refman-generation.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2328783/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='07c94e60452e4fae9f070c9301d898b0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2328783' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/pbuilderrc_OFDh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b1 --logfile b1/build.log isospec_2.3.2-1.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2328783/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), quilt, dh-exec, librsvg2-bin, cmake, d-shlibs, dh-python, python3-dev, python3-setuptools, pybuild-plugin-pyproject, python3-cffi, python3-scikit-build-core, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on quilt; however: Package quilt is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on librsvg2-bin; however: Package librsvg2-bin is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-cffi; however: Package python3-cffi is not installed. pbuilder-satisfydepends-dummy depends on python3-scikit-build-core; however: Package python3-scikit-build-core is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} diffstat{a} doxygen{a} dwz{a} ed{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-mathjax{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4t64{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu76{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libopenjp2-7{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} libptexenc1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librsvg2-2{a} librsvg2-bin{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsynctex2{a} libtasn1-6{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libz3-4{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} pybuild-plugin-pyproject{a} python3{a} python3-autocommand{a} python3-build{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pathspec{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-scikit-build-core{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} quilt{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-luatex{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus default-jre dvisvgm fonts-droid-fallback krb5-locales less libarchive-cpio-perl libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl librsvg2-common libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lynx ps2eps psmisc publicsuffix ruby tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 353 MB of archives. After unpacking 1232 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 30 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 46 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.17.0-1 [409 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 66 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 diffstat amd64 1.68-1 [35.2 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-10 [26.0 MB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libclang-cpp19 amd64 1:19.1.7-10 [13.1 MB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libclang1-19 amd64 1:19.1.7-10 [7732 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 ed amd64 1.22.2-1 [62.9 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 99 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.06.0~dfsg-3 [149 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.06.0~dfsg-3 [479 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-17 [112 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-17 [47.3 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-17 [52.1 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.14-1 [255 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.43-2 [48.3 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-16 [16.0 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b3 [65.1 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.06.0~dfsg-3 [2909 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.06.0~dfsg-3 [50.6 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 33-2 [5852 B] Get: 135 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.1-2 [1547 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libcairo-gobject2 amd64 1.18.4-1+b1 [130 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.2-1 [564 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [313 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.4+dfsg-1 [144 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2025.20250727.75242+ds-4 [154 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b2 [25.6 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2025.20250727.75242+ds-4 [50.5 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 librsvg2-2 amd64 2.61.3+dfsg-2 [1838 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 librsvg2-bin amd64 2.61.3+dfsg-2 [2001 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2025.20250727.75242+ds-4 [58.2 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1+b1 [341 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-4 [99.4 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [59.2 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 lmodern all 2.005-1 [9480 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1.1 [350 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-4 [36.2 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-cffi-backend amd64 2.0.0-2 [95.1 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-ply all 3.11-9 [62.9 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-pycparser all 2.23-1 [78.4 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-cffi all 2.0.0-2 [90.4 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-metadata all 0.9.1-2 [21.6 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-scikit-build-core all 0.11.6-1 [122 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 quilt all 0.68-1 [437 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2025.20250727.75242+ds-4 [7261 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2025.20250927-4 [23.1 MB] Get: 217 http://deb.debian.org/debian unstable/main amd64 texlive-font-utils all 2025.20250927-3 [6979 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2025.20250927-4 [4991 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 texlive-luatex all 2025.20250927-4 [36.0 MB] Get: 220 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2025.20250927-4 [1319 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2025.20250927-4 [8509 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2025.20250927-4 [23.6 MB] Get: 223 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2025.20250927-3 [27.7 MB] Get: 224 http://deb.debian.org/debian unstable/main amd64 texlive-plain-generic all 2025.20250927-3 [29.9 MB] Fetched 353 MB in 8s (41.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/isospec-2.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../isospec_2.3.2-1_source.changes dpkg-buildpackage: info: source package isospec dpkg-buildpackage: info: source version 2.3.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_quilt_unpatch quilt --quiltrc /dev/null pop -a || test $? = 2 Removing patch disable-pdf-refman-generation.patch Restoring man/CMakeLists.txt Removing patch header-file-inclusion.patch Restoring Examples/C++/radiolabelling.cpp Restoring Examples/C++/water.cpp Removing patch library-version.patch Restoring CMakeLists.txt No patches applied rm -rf .pc rm -rf obj-x86_64-linux-gnu rm -rf build rm -f compile_commands.json rm -rf .pc rm -rf IsoSpecPy.egg-info rm -rf .pybuild/ rm -rf tmp-install/ rm -rf IsoSpec++/IsoSpec++ rm -rf IsoSpecPy/build/ # Now the default target dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars debian/files rm -fr -- debian/libisospec\+\+-dev/ debian/tmp/ debian/libisospec\+\+2t64/ debian/python3-isospec/ debian/libisospec\+\+-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' debian/rules binary dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_quilt_patch quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch library-version.patch patching file CMakeLists.txt Applying patch header-file-inclusion.patch patching file Examples/C++/radiolabelling.cpp patching file Examples/C++/water.cpp Applying patch disable-pdf-refman-generation.patch patching file man/CMakeLists.txt Now at patch disable-pdf-refman-generation.patch dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.3.2 -DISOSPEC_LIB_SOVERSION=2 cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.3.2 -DISOSPEC_LIB_SOVERSION=2 .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Library version: 2.3.2 Library soname: 2 Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/reproducible-path/isospec-2.3.2 -- CMAKE_BINARY_DIR: /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. Now configuring IsoSpec++/ for IsoSpec Library version: 2.3.2 Library soname: 2 -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED ISOSPEC_LIB_SOVERSION ISOSPEC_LIB_VERSION -- Build files have been written to: /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core # The C++ lib dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make -f src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make -f src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [ 25%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o [ 50%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/c++ -I/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ -I/build/reproducible-path/isospec-2.3.2/src/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -pedantic -fPIC -MD -MT src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/c++ -DIsoSpec___shared_EXPORTS -I/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ -I/build/reproducible-path/isospec-2.3.2/src/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -pedantic -fPIC -MD -MT src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp In file included from /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp:30: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp: In constructor ‘IsoSpec::Iso::Iso()’: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:53:25: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 53 | isotopeNumbers(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:54:21: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 54 | atomCounts(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:57:26: warning: allocation of insufficient size ‘0’ for type ‘IsoSpec::Marginal*’ with size ‘8’ [-Walloc-size] 57 | marginals(new Marginal*[0]) | ^ In file included from /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp:30: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp: In constructor ‘IsoSpec::Iso::Iso()’: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:53:25: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 53 | isotopeNumbers(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:54:21: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 54 | atomCounts(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:57:26: warning: allocation of insufficient size ‘0’ for type ‘IsoSpec::Marginal*’ with size ‘8’ [-Walloc-size] 57 | marginals(new Marginal*[0]) | ^ [ 75%] Linking CXX static library libIsoSpec++.a cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -P CMakeFiles/IsoSpec++-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-static.dir/link.txt --verbose=1 /usr/bin/ar qc libIsoSpec++.a "CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o" /usr/bin/ranlib libIsoSpec++.a make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [ 75%] Built target IsoSpec++-static [100%] Linking CXX shared library libIsoSpec++.so cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/IsoSpec++-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libIsoSpec++.so.2 -o libIsoSpec++.so.2.3.2 "CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o" cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_symlink_library libIsoSpec++.so.2.3.2 libIsoSpec++.so.2 libIsoSpec++.so make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [100%] Built target IsoSpec++-shared make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Python module dh_auto_build --buildsystem=pybuild pybuild --build -i python{version} -p 3.13 I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/isospec-2.3.2/.pybuild/cpython3_3.13_isospec * Building wheel... *** scikit-build-core 0.11.6 using CMake 3.31.6 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmpinaclyoi/build/CMakeInit.txt -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.3s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmpinaclyoi/build *** Building project with Unix Makefiles... gmake[2]: Entering directory '/tmp/tmpinaclyoi/build' [ 50%] Building CXX object CMakeFiles/IsoSpecCppPy.dir/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp.o [100%] Linking CXX shared library libIsoSpecCppPy.so [100%] Built target IsoSpecCppPy gmake[2]: Leaving directory '/tmp/tmpinaclyoi/build' *** Installing project into wheel... -- Install configuration: "Release" -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/libIsoSpecCppPy.so -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++ -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/conf.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/marginalTrek++.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/btrd.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/platform.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/pod_vector.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/fixedEnvelopes.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/cwrapper.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/summator.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/element_tables.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/misc.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/fasta.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/isoMath.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/allocator.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/platform_incl.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/isoSpec++.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/operators.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/mman.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/dirtyAllocator.h *** Making wheel... *** Created isospecpy-2.3.2-cp313-cp313-linux_x86_64.whl Successfully built isospecpy-2.3.2-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module # The Doxygen-based HTML format documentation dh_auto_build -O--buildsystem=cmake -- html_doc cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" html_doc VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc make[3]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend make[5]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/man /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/man /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build make[5]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [100%] Doxygen-based developer html documentation generation cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/man && doxygen doxyfile warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1256 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1545 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1833 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1849 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1915 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2013 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2206 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2257 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2264 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2488 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSp/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:40: warning: Compound IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:460: warning: Compound IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:586: warning: Compound IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:525: warning: Compound IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:433: warning: Compound IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:32: warning: Compound pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:152: warning: Compound ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:394: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:473: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command ec++/mman.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform_incl.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform_incl.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/python-build.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/python-build.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h... Genera/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:194: warning: Member iterator (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:195: warning: Member const_iterator (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:196: warning: Member value_type (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:197: warning: Member size_type (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:198: warning: Member reference (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:199: warning: Member const_reference (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:39: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:54: warning: Member operator=(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:64: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:74: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:82: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:94: warning: Member reserve(size_t n) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:100: warning: Member resize(size_t new_size) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:114: warning: Member resize_and_wipe(size_t new_size) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:122: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:129: warning: Member push_back(const T &val) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:137: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:143: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:149: warning: Member size() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:154: warning: Member capacity() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:159: warning: Member data() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:164: warning: Member data() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:169: warning: Member empty() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:174: warning: Member back() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:180: warning: Member pop_back() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:187: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:201: warning: Member begin() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:202: warning: Member begin() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:203: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:204: warning: Member end() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:205: warning: Member end() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:206: warning: Member cend() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:208: warning: Member front() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:214: warning: Member clear() (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:372: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:373: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:374: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:375: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:376: warning: Member reference (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:377: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:234: warning: Member init() (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:242: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:261: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:272: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:278: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:292: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:300: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:307: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:315: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:321: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:327: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:332: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:337: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:342: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:347: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:352: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:358: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:365: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:379: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:380: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:381: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:382: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:383: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:384: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:386: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:392: warning: Member clear() (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:153: warning: Member res1 (variable) of struct ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:154: warning: Member res2 (variable) of struct ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:155: warning: Member flow (variable) of struct ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:307: warning: Member IsoOrderedGenerator (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:583: warning: Member IsoLayeredGenerator (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:691: warning: Member IsoStochasticGenerator (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp:135: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:37: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:149: warning: Member random_gen(std::random_device{}()) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:150: warning: Member stdunif(0.0, 1.0) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:152: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, size_t n, size_t start, size_t end) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, size_t size, const char *prefix="") (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:99: warning: Member printVector(const pod_vector< T > &vec) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:104: warning: Member printOffsets(const T **array, size_t size, const T *offset, const char *prefix="") (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:113: warning: Member printNestedArray(const T **array, const int *shape, size_t size) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:138: warning: Member dealloc_table(T *tbl, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:147: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:156: warning: Member get_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:167: warning: Member get_inverse_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:178: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp:53: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented: parameter 'isotopeNo' parameter 'lprobs' parameter 'res' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:70: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:71: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:73: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:82: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:83: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:86: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:88: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:89: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:90: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:92: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:93: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:94: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:95: warning: Member release_everything() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:98: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:99: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:100: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:102: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:103: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:105: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:106: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:107: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:108: warning: Member shift_mass(double shift) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:109: warning: Member resample(size_t ionic_current, double beta_bias=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:111: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:112: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:113: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:115: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:116: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:117: warning: Member AbyssalWassersteinDistance(FixedEnvelope &other, double abyss_depth, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:118: warning: Member WassersteinMatch(FixedEnvelope &other, double flow_distance, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:125: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:170: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:172: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:181: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:216: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:121: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:122: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:194: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:199: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:211: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:218: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:230: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:235: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:236: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:132: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:139: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:152: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:166: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:167: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:42: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:43: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:44: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:45: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:46: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:47: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:48: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:49: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:50: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:51: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:52: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:53: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:54: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:241: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (friend) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\use_nominal_masses' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:112: warning: Found unknown command '\add_water' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:107: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented: parameter 'use_nominal_masses' parameter 'add_water' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:504: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:506: warning: Member IsoLayeredGeneratorTemplate(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:520: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:555: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:557: warning: Member get_conf_by_indexes(int *space) const (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:291: warning: Member get_conf_by_indexes(int *space) (function) of class IsoSpec::IsoOrderedGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:598: warning: Member IsoStochasticGeneratorTemplate(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0, std::mt19937 &rdvariate_gen=random_gen) (function) of class IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:600: warning: Member count() const (function) of class IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:685: warning: Member get_indexes(int *space) (function) of class IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:360: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:360: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:360: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:394: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:420: warning: Member conf_lprobs() const (function) of class IsoSpec::LayeredMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:421: warning: Member conf_masses() const (function) of class IsoSpec::LayeredMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:376: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:386: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:394: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:532: warning: Member LoggingMarginal(T &&m) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:533: warning: Member LoggingMarginal(T &&m, int tabSize, int hashSize) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:539: warning: Member getModeLProb() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:540: warning: Member get_lProb(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:541: warning: Member get_prob(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:542: warning: Member get_mass(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:543: warning: Member get_lProbs_ptr() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:544: warning: Member get_conf(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:545: warning: Member get_no_confs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:546: warning: Member probeConfigurationIdx(int idx) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:547: warning: Member get_min_mass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:548: warning: Member get_max_mass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:549: warning: Member getModeMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:550: warning: Member getLightestConfMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:551: warning: Member getHeaviestConfMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:552: warning: Member getMonoisotopicConfMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:553: warning: Member getAtomAverageMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:554: warning: Member variance() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:555: warning: Member getTheoreticalAverageMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:556: warning: Member getLogSizeEstimate(double logEllipsoidRadius) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:562: warning: Member ensureModeConf() (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:563: warning: Member conf_lprobs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:564: warning: Member conf_masses() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:565: warning: Member get_original_position(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:566: warning: Member get_isotopeNo() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:567: warning: Member get_lProbs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:568: warning: Member get_masses() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:569: warning: Member get_atom_lProbs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:570: warning: Member get_atom_masses() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:571: warning: Member extend(double new_threshold, bool do_sort=true) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:60: warning: found documented return type for IsoSpec::Marginal::Marginal that does not return anything /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:241: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:242: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:243: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:207: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:146: warning: Member operator()(size_t m1, size_t m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:262: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:263: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:264: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:265: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:266: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:267: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:268: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:272: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:272: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:272: warning: found documented return type for IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal that does not return anything /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented. ting code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform_incl.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/python-build.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound pod_vector... Generating docs for compound unsafe_pod_vector... Generating docs for compound ws_match_res... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::FixedEnvelope... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoLayeredGeneratorTemplate... Generating docs for compound IsoSpec::IsoOrderedGeneratorTemplate... Generating docs for compound IsoSpec::IsoStochasticGeneratorTemplate... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::LayeredMarginal... Generating docs for compound IsoSpec::LoggingMarginal... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::ProbAndConfPtr... Ge/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:473: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:504: warning: Member probeConfigurationIdx(int idx) (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:508: warning: Member conf_lprobs() const (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:509: warning: Member conf_masses() const (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:511: warning: Member get_original_position(int idx) const (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:455: warning: The following parameter of IsoSpec::SingleAtomMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:473: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:129: warning: Member operator()(size_t i, size_t j) (function) of class IsoSpec::TableOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. nerating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::SingleAtomMarginal... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 3261/65536 hits=17845 misses=3351 symbol lookup cache used 3109/65536 hits=24371 misses=3109 finished... make[5]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [100%] Built target html_doc make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Doxygen-based PDF format documentation # As of 20251016, pdflatex refman.tex fails. # dh_auto_build -O--buildsystem=cmake -- pdf_doc # sed-based replacement of the cloudflare URL with the MathJax.js file from the # libjs-mathjax package sh debian/replace-mathjax-cloudflare-url-local-file.sh make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' dh_auto_test -O--buildsystem=pybuild pybuild --test -i python{version} -p 3.13 I: pybuild base:311: cd /build/reproducible-path/isospec-2.3.2/.pybuild/cpython3_3.13_isospec/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN rm -fr -- /tmp/dh-xdg-rundir-x6BTUS1z create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars rm -fr -- debian/.debhelper/generated/libisospec\+\+-dev/ debian/libisospec\+\+-dev/ debian/tmp/ debian/.debhelper/generated/libisospec\+\+2t64/ debian/libisospec\+\+2t64/ debian/.debhelper/generated/python3-isospec/ debian/python3-isospec/ debian/.debhelper/generated/libisospec\+\+-doc/ debian/libisospec\+\+-doc/ rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core # The C++ lib dh_auto_install -O--buildsystem=cmake install -m0755 -d /build/reproducible-path/isospec-2.3.2/debian/tmp cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/isospec-2.3.2/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec++/FindIsoSpec++.cmake -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec++/IsoSpec++Config.cmake -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libisospec++.pc -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/platform__incl_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_s.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderopen.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/menu.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_hd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doxygen.css -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/conf_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/files.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderclosed.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/misc_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_fd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fasta_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/operators_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classpod__vector-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/unity-build_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/python-build_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/cwrapper_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_ad.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/bc_sd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/operators_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_bd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/plusd.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/misc_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/closed.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dynsections.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doxygen.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/docd.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/splitbar.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/element__tables_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderclosedd.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doc.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_h.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/index.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_h.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dir_b34879a1d7d063b9f8968807d451b7a6.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/btrd_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderopend.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fasta_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions_vars.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/annotated.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespace_iso_spec.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/summator_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/platform_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespaces.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/allocator_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/jquery.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/pod__vector_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/hierarchy.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions_func.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/mman_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classpod__vector.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/structws__match__res-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/open.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_hd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/bc_s.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/plus.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/minus.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_a.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/cwrapper_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_6.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_10.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_6.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_0.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_b.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_2.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_b.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_7.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/search.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_3.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_1.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_6.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_10.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_seld.svg -- Installing: 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-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/menudata.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_b.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/mman_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_sd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tabs.css -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/structws__match__res.html -- Installing: 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-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_f.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_g.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/sync_off.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespacemembers.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/minusd.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/allocator_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespacemembers_func.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TSummator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TableOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SSummator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_MarginalTrek.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_FixedEnvelope.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoGenerator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Allocator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_PrecalculatedMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_KeyHasher.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrderMarginalDescending.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ProbAndConfPtr.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Iso.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoOrderedGeneratorTemplate.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoStochasticGeneratorTemplate.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SingleAtomMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Marginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_DirtyAllocator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfEqual.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/pod_vector.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LoggingMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Summator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoLayeredGeneratorTemplate.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoThresholdGenerator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_OrderMarginalsBySizeDecresing.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrderMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/ws_match_res.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LayeredMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/unsafe_pod_vector.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ReverseOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++ -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/radiolabelling.cpp -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/water.cpp -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/COMPILING -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/binned_spectrum.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/fasta.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/water.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/custom_elements.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/radiolabelling.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R/radiolabelling.R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R/water.R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2.3.2 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.a -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++ -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/conf.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/marginalTrek++.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/btrd.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/platform.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/pod_vector.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/fixedEnvelopes.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/cwrapper.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/summator.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/element_tables.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/misc.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/fasta.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoMath.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/allocator.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/platform_incl.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoSpec++.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/operators.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/mman.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/dirtyAllocator.h make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Python module dh_auto_install -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/isospec-2.3.2/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/isospec-2.3.2/debian/tmp I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir # Now remove the links, that we'll provide using d/*.links # So that we can use libIsoSpec++.so.* in d/*.install rm -f debian/tmp/usr/lib/*/libIsoSpec++.so rm -f debian/tmp/usr/lib/*/libIsoSpec++.so.2 make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' dh_install -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/IsoSpec\+\+ debian/libisospec\+\+-dev//usr/include/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.a debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/cmake cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec\+\+ debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/cmake/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libisospec\+\+.pc debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/pkgconfig/ install -m0755 -d debian/libisospec\+\+2t64//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+2t64//usr/lib/x86_64-linux-gnu/ install -m0755 -d debian/libisospec\+\+-doc//usr/share/doc cp --reflink=auto -a debian/tmp/usr/share/doc/isospec debian/libisospec\+\+-doc//usr/share/doc/ dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/copyright debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/copyright install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64 install -p -m0644 debian/copyright debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/copyright install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/copyright debian/python3-isospec/usr/share/doc/python3-isospec/copyright install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc install -p -m0644 debian/copyright debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/copyright install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc-base/ install -p -m0644 debian/libisospec\+\+-doc.doc-base debian/libisospec\+\+-doc/usr/share/doc-base/libisospec\+\+-doc.libisospec\+\+ dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64 install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/dh_installchangelogs.dch.trimmed debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/changelog install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/.debhelper/generated/libisospec\+\+-dev/dh_installchangelogs.dch.trimmed debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc install -p -m0644 debian/.debhelper/generated/libisospec\+\+-doc/dh_installchangelogs.dch.trimmed debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/.debhelper/generated/python3-isospec/dh_installchangelogs.dch.trimmed debian/python3-isospec/usr/share/doc/python3-isospec/changelog.Debian install -p -m0644 ./CHANGELOG debian/python3-isospec/usr/share/doc/python3-isospec/changelog dh_installman -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LoggingMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/ws_match_res.3 debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package libisospec++-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:166: skipping package libisospec++2t64 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:166: skipping package libisospec++-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=isospec, binary packages=['python3-isospec'] D: dh_python3 dh_python3:205: processing package python3-isospec... D: dh_python3 fs:50: moving files from debian/python3-isospec/usr/lib/python3.13/dist-packages to debian/python3-isospec/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.13 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:421: renaming libIsoSpecCppPy.so to libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so D: dh_python3 fs:179: Writing INSTALLER in debian/python3-isospec/usr/lib/python3/dist-packages/isospecpy-2.3.2.dist-info D: dh_python3 fs:190: Deleting RECORD in debian/python3-isospec/usr/lib/python3/dist-packages/isospecpy-2.3.2.dist-info D: dh_python3 fs:338: package python3-isospec details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-isospec/usr/lib/python3/dist-packages/isospecpy-2.3.2.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-isospec D: dh_python3 pydist:175: trying to find dependency for cffi (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:220: dependency: requirement already has hardcoded version D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3:any', 'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/usr/share/lintian/overrides install -p -m0644 debian/libisospec\+\+2t64.lintian-overrides debian/libisospec\+\+2t64/usr/share/lintian/overrides/libisospec\+\+2t64 dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu rm -f debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so ln -s libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so install -m0755 -d debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu rm -f debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2 ln -s libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2 dh_strip_nondeterminism -O--buildsystem=pybuild Using 1762380009 as canonical time Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_fd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_ad.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_bd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/open.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbard.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/libisospec++-dev cd debian/libisospec++2t64 cd debian/python3-isospec cd debian/libisospec++-doc chmod a-x usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_LoggingMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 chmod a-x usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian gzip -9nf usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian gzip -9nf usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_LoggingMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' dh_fixperms -O--buildsystem=pybuild find debian/libisospec\+\+-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+2t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+2t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++2t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+2t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/man debian/libisospec\+\+-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz -- debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 dwz -- debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so dwz: debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.a strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9/f311289d1532e55c3680ac28eab799e9a43b81.debug chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9/f311289d1532e55c3680ac28eab799e9a43b81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 objcopy --add-gnu-debuglink debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9/f311289d1532e55c3680ac28eab799e9a43b81.debug debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc ln -s libisospec\+\+2t64 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc/libisospec\+\+2t64-dbgsym install -m0755 -d debian/.debhelper/libisospec\+\+2t64 dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/libisospec\+\+-dev/DEBIAN/shlibs rm -f debian/libisospec\+\+2t64/DEBIAN/shlibs install -m0755 -d debian/libisospec\+\+2t64/DEBIAN echo "libIsoSpec++ 2 libisospec++2t64 (>= 2.3.2)" >> debian/libisospec\+\+2t64/DEBIAN/shlibs chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/shlibs mv debian/.debhelper/generated/libisospec\+\+2t64/triggers.new debian/.debhelper/generated/libisospec\+\+2t64/triggers mv debian/libisospec\+\+2t64.substvars.new debian/libisospec\+\+2t64.substvars rm -f debian/python3-isospec/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/DEBIAN dpkg-shlibdeps -Tdebian/libisospec\+\+2t64.substvars debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 install -m0755 -d debian/python3-isospec/DEBIAN dpkg-shlibdeps -Tdebian/python3-isospec.substvars debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN install -m0755 -d debian/libisospec\+\+2t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/triggers debian/libisospec\+\+2t64/DEBIAN/triggers install -m0755 -d debian/python3-isospec/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/postinst cat debian/python3-isospec.postinst.debhelper >> debian/python3-isospec/DEBIAN/postinst chmod 0755 -- debian/python3-isospec/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/prerm cat debian/python3-isospec.prerm.debhelper >> debian/python3-isospec/DEBIAN/prerm chmod 0755 -- debian/python3-isospec/DEBIAN/prerm install -m0755 -d debian/libisospec\+\+-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN echo misc:Depends= >> debian/libisospec++-dev.substvars echo misc:Pre-Depends= >> debian/libisospec++-dev.substvars dpkg-gencontrol -plibisospec\+\+-dev -ldebian/changelog -Tdebian/libisospec\+\+-dev.substvars -cdebian/control -Pdebian/libisospec\+\+-dev install -m0755 -d debian/libisospec\+\+2t64/DEBIAN echo misc:Depends= >> debian/libisospec++2t64.substvars echo misc:Pre-Depends= >> debian/libisospec++2t64.substvars install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/.debhelper/libisospec\+\+2t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libisospec\+\+2t64-dbgsym -DDepends="libisospec++2t64 (= \${binary:Version})" -DDescription="debug symbols for libisospec++2t64" -DBuild-Ids=d9f311289d1532e55c3680ac28eab799e9a43b81 -DSection=debug -UReplaces -UBreaks install -m0755 -d debian/libisospec\+\+-doc/DEBIAN echo misc:Depends= >> debian/libisospec++-doc.substvars echo misc:Pre-Depends= >> debian/libisospec++-doc.substvars dpkg-gencontrol -plibisospec\+\+-doc -ldebian/changelog -Tdebian/libisospec\+\+-doc.substvars -cdebian/control -Pdebian/libisospec\+\+-doc install -m0755 -d debian/python3-isospec/DEBIAN echo misc:Depends= >> debian/python3-isospec.substvars echo misc:Pre-Depends= >> debian/python3-isospec.substvars dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -cdebian/control -Pdebian/python3-isospec chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/control chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/control chmod 0644 -- debian/python3-isospec/DEBIAN/control chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/libisospec\+\+2t64 chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN install -m0755 -d debian/libisospec\+\+2t64/DEBIAN install -m0755 -d debian/python3-isospec/DEBIAN install -m0755 -d debian/libisospec\+\+-doc/DEBIAN cd debian/libisospec++2t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-isospec >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/md5sums cd debian/.debhelper/libisospec++2t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/libisospec\+\+-dev .. dpkg-deb --root-owner-group --build debian/libisospec\+\+2t64 .. dpkg-deb --root-owner-group --build debian/.debhelper/libisospec\+\+2t64/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-isospec .. dpkg-deb --root-owner-group --build debian/libisospec\+\+-doc .. dpkg-deb: building package 'libisospec++-dev' in '../libisospec++-dev_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++2t64' in '../libisospec++2t64_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++2t64-dbgsym' in '../libisospec++2t64-dbgsym_2.3.2-1_amd64.deb'. dpkg-deb: building package 'python3-isospec' in '../python3-isospec_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++-doc' in '../libisospec++-doc_2.3.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../isospec_2.3.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../isospec_2.3.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2328783 and its subdirectories I: Current time: Wed Dec 9 14:47:50 -12 2026 I: pbuilder-time-stamp: 1796870870 Thu Dec 10 02:47:50 UTC 2026 I: Signing ./b1/isospec_2.3.2-1_amd64.buildinfo as isospec_2.3.2-1_amd64.buildinfo.asc Thu Dec 10 02:47:50 UTC 2026 I: Signed ./b1/isospec_2.3.2-1_amd64.buildinfo as ./b1/isospec_2.3.2-1_amd64.buildinfo.asc Thu Dec 10 02:47:50 UTC 2026 - build #1 for isospec/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Thu Dec 10 02:47:50 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-0ShXUV5t, removing. /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Nov 6 20:24 b1 drwxrwxr-x 2 jenkins jenkins 4096 Nov 6 20:20 b2 -rw-rw-r-- 1 jenkins jenkins 2477 Nov 5 22:58 isospec_2.3.2-1.dsc -rw------- 1 jenkins jenkins 3579 Nov 6 20:20 rbuildlog.3KjFBKD /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b1: total 3608 -rw-r--r-- 1 jenkins jenkins 287337 Nov 6 20:24 build.log -rw-r--r-- 1 jenkins jenkins 33740 Nov 6 20:24 isospec_2.3.2-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2477 Nov 6 20:24 isospec_2.3.2-1.dsc -rw-r--r-- 1 jenkins jenkins 12143 Nov 6 20:24 isospec_2.3.2-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 13025 Nov 6 20:24 isospec_2.3.2-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2669 Nov 6 20:24 isospec_2.3.2-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1597 Nov 6 20:24 isospec_2.3.2-1_source.changes -rw-r--r-- 1 jenkins jenkins 2176151 Nov 6 20:24 isospec_2.3.2.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 142360 Nov 6 20:24 libisospec++-dev_2.3.2-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 458384 Nov 6 20:24 libisospec++-doc_2.3.2-1_all.deb -rw-r--r-- 1 jenkins jenkins 347232 Nov 6 20:24 libisospec++2t64-dbgsym_2.3.2-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 76996 Nov 6 20:24 libisospec++2t64_2.3.2-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 116740 Nov 6 20:24 python3-isospec_2.3.2-1_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b2: total 0 Thu Nov 6 20:24:50 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 9 14:43:05 -12 2026 I: pbuilder-time-stamp: 1796870585 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [isospec_2.3.2-1.dsc] I: copying [./isospec_2.3.2.orig.tar.gz] I: copying [./isospec_2.3.2-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./isospec_2.3.2-1.dsc: no acceptable signature found dpkg-source: info: extracting isospec in isospec-2.3.2 dpkg-source: info: unpacking isospec_2.3.2.orig.tar.gz dpkg-source: info: unpacking isospec_2.3.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying library-version.patch dpkg-source: info: applying header-file-inclusion.patch dpkg-source: info: applying disable-pdf-refman-generation.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2328783/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='07c94e60452e4fae9f070c9301d898b0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2328783' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/pbuilderrc_OFDh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b1 --logfile b1/build.log isospec_2.3.2-1.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2328783/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), quilt, dh-exec, librsvg2-bin, cmake, d-shlibs, dh-python, python3-dev, python3-setuptools, pybuild-plugin-pyproject, python3-cffi, python3-scikit-build-core, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on quilt; however: Package quilt is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on librsvg2-bin; however: Package librsvg2-bin is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-cffi; however: Package python3-cffi is not installed. pbuilder-satisfydepends-dummy depends on python3-scikit-build-core; however: Package python3-scikit-build-core is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} diffstat{a} doxygen{a} dwz{a} ed{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-mathjax{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4t64{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu76{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libopenjp2-7{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} libptexenc1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librsvg2-2{a} librsvg2-bin{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsynctex2{a} libtasn1-6{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libz3-4{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} pybuild-plugin-pyproject{a} python3{a} python3-autocommand{a} python3-build{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pathspec{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-scikit-build-core{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} quilt{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-luatex{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus default-jre dvisvgm fonts-droid-fallback krb5-locales less libarchive-cpio-perl libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl librsvg2-common libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lynx ps2eps psmisc publicsuffix ruby tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 353 MB of archives. After unpacking 1232 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 30 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 46 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.17.0-1 [409 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 66 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 diffstat amd64 1.68-1 [35.2 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-10 [26.0 MB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libclang-cpp19 amd64 1:19.1.7-10 [13.1 MB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libclang1-19 amd64 1:19.1.7-10 [7732 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 ed amd64 1.22.2-1 [62.9 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 99 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.06.0~dfsg-3 [149 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.06.0~dfsg-3 [479 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-17 [112 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-17 [47.3 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-17 [52.1 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.14-1 [255 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.43-2 [48.3 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-16 [16.0 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b3 [65.1 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.06.0~dfsg-3 [2909 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.06.0~dfsg-3 [50.6 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 33-2 [5852 B] Get: 135 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.1-2 [1547 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libcairo-gobject2 amd64 1.18.4-1+b1 [130 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.2-1 [564 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [313 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.4+dfsg-1 [144 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2025.20250727.75242+ds-4 [154 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b2 [25.6 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2025.20250727.75242+ds-4 [50.5 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 librsvg2-2 amd64 2.61.3+dfsg-2 [1838 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 librsvg2-bin amd64 2.61.3+dfsg-2 [2001 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2025.20250727.75242+ds-4 [58.2 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1+b1 [341 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-4 [99.4 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [59.2 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 lmodern all 2.005-1 [9480 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1.1 [350 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-4 [36.2 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-cffi-backend amd64 2.0.0-2 [95.1 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-ply all 3.11-9 [62.9 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-pycparser all 2.23-1 [78.4 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-cffi all 2.0.0-2 [90.4 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-metadata all 0.9.1-2 [21.6 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-scikit-build-core all 0.11.6-1 [122 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 quilt all 0.68-1 [437 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2025.20250727.75242+ds-4 [7261 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2025.20250927-4 [23.1 MB] Get: 217 http://deb.debian.org/debian unstable/main amd64 texlive-font-utils all 2025.20250927-3 [6979 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2025.20250927-4 [4991 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 texlive-luatex all 2025.20250927-4 [36.0 MB] Get: 220 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2025.20250927-4 [1319 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2025.20250927-4 [8509 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2025.20250927-4 [23.6 MB] Get: 223 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2025.20250927-3 [27.7 MB] Get: 224 http://deb.debian.org/debian unstable/main amd64 texlive-plain-generic all 2025.20250927-3 [29.9 MB] Fetched 353 MB in 8s (41.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20734 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21749 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package libproc2-0:amd64. 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Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up doxygen (1.9.8+ds-2.1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libpython3.13-dev:amd64 (3.13.9-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up lmodern (2.005-1) ... Setting up libcairo-gobject2:amd64 (1.18.4-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-2) ... Setting up python3-pathspec (0.12.1-1) ... Setting up libcups2t64:amd64 (2.4.14-1) ... Setting up python3-cffi-backend:amd64 (2.0.0-2) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... 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Setting up texlive-binaries (2025.20250727.75242+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up cmake (4.1.1+really3.31.6-2) ... Setting up python3-build (1.2.2-4) ... Setting up texlive-base (2025.20250927-4) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up libgs10-common (10.06.0~dfsg-3) ... Setting up librsvg2-bin (2.61.3+dfsg-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-scikit-build-core (0.11.6-1) ... 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Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/isospec-2.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../isospec_2.3.2-1_source.changes dpkg-buildpackage: info: source package isospec dpkg-buildpackage: info: source version 2.3.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_quilt_unpatch quilt --quiltrc /dev/null pop -a || test $? = 2 Removing patch disable-pdf-refman-generation.patch Restoring man/CMakeLists.txt Removing patch header-file-inclusion.patch Restoring Examples/C++/radiolabelling.cpp Restoring Examples/C++/water.cpp Removing patch library-version.patch Restoring CMakeLists.txt No patches applied rm -rf .pc rm -rf obj-x86_64-linux-gnu rm -rf build rm -f compile_commands.json rm -rf .pc rm -rf IsoSpecPy.egg-info rm -rf .pybuild/ rm -rf tmp-install/ rm -rf IsoSpec++/IsoSpec++ rm -rf IsoSpecPy/build/ # Now the default target dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars debian/files rm -fr -- debian/libisospec\+\+-dev/ debian/tmp/ debian/libisospec\+\+2t64/ debian/python3-isospec/ debian/libisospec\+\+-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' debian/rules binary dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_quilt_patch quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch library-version.patch patching file CMakeLists.txt Applying patch header-file-inclusion.patch patching file Examples/C++/radiolabelling.cpp patching file Examples/C++/water.cpp Applying patch disable-pdf-refman-generation.patch patching file man/CMakeLists.txt Now at patch disable-pdf-refman-generation.patch dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.3.2 -DISOSPEC_LIB_SOVERSION=2 cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.3.2 -DISOSPEC_LIB_SOVERSION=2 .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Library version: 2.3.2 Library soname: 2 Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/reproducible-path/isospec-2.3.2 -- CMAKE_BINARY_DIR: /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. Now configuring IsoSpec++/ for IsoSpec Library version: 2.3.2 Library soname: 2 -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED ISOSPEC_LIB_SOVERSION ISOSPEC_LIB_VERSION -- Build files have been written to: /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core # The C++ lib dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make -f src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make -f src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [ 25%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o [ 50%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/c++ -I/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ -I/build/reproducible-path/isospec-2.3.2/src/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -pedantic -fPIC -MD -MT src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/c++ -DIsoSpec___shared_EXPORTS -I/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ -I/build/reproducible-path/isospec-2.3.2/src/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -pedantic -fPIC -MD -MT src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp In file included from /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp:30: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp: In constructor ‘IsoSpec::Iso::Iso()’: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:53:25: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 53 | isotopeNumbers(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:54:21: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 54 | atomCounts(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:57:26: warning: allocation of insufficient size ‘0’ for type ‘IsoSpec::Marginal*’ with size ‘8’ [-Walloc-size] 57 | marginals(new Marginal*[0]) | ^ In file included from /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp:30: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp: In constructor ‘IsoSpec::Iso::Iso()’: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:53:25: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 53 | isotopeNumbers(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:54:21: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 54 | atomCounts(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:57:26: warning: allocation of insufficient size ‘0’ for type ‘IsoSpec::Marginal*’ with size ‘8’ [-Walloc-size] 57 | marginals(new Marginal*[0]) | ^ [ 75%] Linking CXX static library libIsoSpec++.a cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -P CMakeFiles/IsoSpec++-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-static.dir/link.txt --verbose=1 /usr/bin/ar qc libIsoSpec++.a "CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o" /usr/bin/ranlib libIsoSpec++.a make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [ 75%] Built target IsoSpec++-static [100%] Linking CXX shared library libIsoSpec++.so cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/IsoSpec++-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libIsoSpec++.so.2 -o libIsoSpec++.so.2.3.2 "CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o" cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_symlink_library libIsoSpec++.so.2.3.2 libIsoSpec++.so.2 libIsoSpec++.so make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [100%] Built target IsoSpec++-shared make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Python module dh_auto_build --buildsystem=pybuild pybuild --build -i python{version} -p 3.13 I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/isospec-2.3.2/.pybuild/cpython3_3.13_isospec * Building wheel... *** scikit-build-core 0.11.6 using CMake 3.31.6 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmpinaclyoi/build/CMakeInit.txt -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.3s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmpinaclyoi/build *** Building project with Unix Makefiles... gmake[2]: Entering directory '/tmp/tmpinaclyoi/build' [ 50%] Building CXX object CMakeFiles/IsoSpecCppPy.dir/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp.o [100%] Linking CXX shared library libIsoSpecCppPy.so [100%] Built target IsoSpecCppPy gmake[2]: Leaving directory '/tmp/tmpinaclyoi/build' *** Installing project into wheel... -- Install configuration: "Release" -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/libIsoSpecCppPy.so -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++ -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/conf.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/marginalTrek++.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/btrd.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/platform.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/pod_vector.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/fixedEnvelopes.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/cwrapper.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/summator.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/element_tables.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/misc.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/fasta.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/isoMath.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/allocator.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/platform_incl.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/isoSpec++.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/operators.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/mman.h -- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/dirtyAllocator.h *** Making wheel... *** Created isospecpy-2.3.2-cp313-cp313-linux_x86_64.whl Successfully built isospecpy-2.3.2-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module # The Doxygen-based HTML format documentation dh_auto_build -O--buildsystem=cmake -- html_doc cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" html_doc VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc make[3]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend make[5]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/man /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/man /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build make[5]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [100%] Doxygen-based developer html documentation generation cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/man && doxygen doxyfile warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1256 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1545 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1833 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1849 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1915 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2013 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2206 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2257 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2264 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2488 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSp/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:40: warning: Compound IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:460: warning: Compound IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:586: warning: Compound IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:525: warning: Compound IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:433: warning: Compound IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:32: warning: Compound pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:152: warning: Compound ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:394: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:473: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command ec++/mman.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform_incl.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform_incl.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/python-build.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/python-build.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h... Genera/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:194: warning: Member iterator (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:195: warning: Member const_iterator (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:196: warning: Member value_type (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:197: warning: Member size_type (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:198: warning: Member reference (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:199: warning: Member const_reference (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:39: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:54: warning: Member operator=(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:64: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:74: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:82: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:94: warning: Member reserve(size_t n) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:100: warning: Member resize(size_t new_size) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:114: warning: Member resize_and_wipe(size_t new_size) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:122: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:129: warning: Member push_back(const T &val) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:137: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:143: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:149: warning: Member size() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:154: warning: Member capacity() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:159: warning: Member data() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:164: warning: Member data() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:169: warning: Member empty() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:174: warning: Member back() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:180: warning: Member pop_back() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:187: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:201: warning: Member begin() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:202: warning: Member begin() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:203: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:204: warning: Member end() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:205: warning: Member end() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:206: warning: Member cend() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:208: warning: Member front() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:214: warning: Member clear() (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:372: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:373: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:374: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:375: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:376: warning: Member reference (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:377: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:234: warning: Member init() (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:242: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:261: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:272: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:278: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:292: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:300: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:307: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:315: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:321: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:327: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:332: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:337: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:342: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:347: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:352: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:358: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:365: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:379: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:380: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:381: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:382: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:383: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:384: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:386: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:392: warning: Member clear() (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:153: warning: Member res1 (variable) of struct ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:154: warning: Member res2 (variable) of struct ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:155: warning: Member flow (variable) of struct ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:307: warning: Member IsoOrderedGenerator (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:583: warning: Member IsoLayeredGenerator (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:691: warning: Member IsoStochasticGenerator (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp:135: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:37: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:149: warning: Member random_gen(std::random_device{}()) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:150: warning: Member stdunif(0.0, 1.0) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:152: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, size_t n, size_t start, size_t end) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, size_t size, const char *prefix="") (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:99: warning: Member printVector(const pod_vector< T > &vec) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:104: warning: Member printOffsets(const T **array, size_t size, const T *offset, const char *prefix="") (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:113: warning: Member printNestedArray(const T **array, const int *shape, size_t size) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:138: warning: Member dealloc_table(T *tbl, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:147: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:156: warning: Member get_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:167: warning: Member get_inverse_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:178: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp:53: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented: parameter 'isotopeNo' parameter 'lprobs' parameter 'res' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:70: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:71: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:73: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:82: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:83: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:86: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:88: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:89: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:90: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:92: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:93: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:94: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:95: warning: Member release_everything() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:98: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:99: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:100: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:102: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:103: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:105: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:106: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:107: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:108: warning: Member shift_mass(double shift) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:109: warning: Member resample(size_t ionic_current, double beta_bias=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:111: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:112: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:113: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:115: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:116: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:117: warning: Member AbyssalWassersteinDistance(FixedEnvelope &other, double abyss_depth, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:118: warning: Member WassersteinMatch(FixedEnvelope &other, double flow_distance, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:125: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:170: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:172: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:181: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:216: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:121: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:122: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:194: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:199: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:211: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:218: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:230: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:235: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:236: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:132: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:139: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:152: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:166: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:167: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:42: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:43: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:44: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:45: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:46: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:47: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:48: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:49: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:50: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:51: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:52: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:53: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:54: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:241: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (friend) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\use_nominal_masses' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:112: warning: Found unknown command '\add_water' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:107: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented: parameter 'use_nominal_masses' parameter 'add_water' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:504: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:506: warning: Member IsoLayeredGeneratorTemplate(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:520: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:555: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:557: warning: Member get_conf_by_indexes(int *space) const (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:291: warning: Member get_conf_by_indexes(int *space) (function) of class IsoSpec::IsoOrderedGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:598: warning: Member IsoStochasticGeneratorTemplate(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0, std::mt19937 &rdvariate_gen=random_gen) (function) of class IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:600: warning: Member count() const (function) of class IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:685: warning: Member get_indexes(int *space) (function) of class IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:360: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:360: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:360: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:394: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:420: warning: Member conf_lprobs() const (function) of class IsoSpec::LayeredMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:421: warning: Member conf_masses() const (function) of class IsoSpec::LayeredMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:376: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:386: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:394: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:532: warning: Member LoggingMarginal(T &&m) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:533: warning: Member LoggingMarginal(T &&m, int tabSize, int hashSize) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:539: warning: Member getModeLProb() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:540: warning: Member get_lProb(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:541: warning: Member get_prob(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:542: warning: Member get_mass(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:543: warning: Member get_lProbs_ptr() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:544: warning: Member get_conf(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:545: warning: Member get_no_confs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:546: warning: Member probeConfigurationIdx(int idx) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:547: warning: Member get_min_mass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:548: warning: Member get_max_mass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:549: warning: Member getModeMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:550: warning: Member getLightestConfMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:551: warning: Member getHeaviestConfMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:552: warning: Member getMonoisotopicConfMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:553: warning: Member getAtomAverageMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:554: warning: Member variance() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:555: warning: Member getTheoreticalAverageMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:556: warning: Member getLogSizeEstimate(double logEllipsoidRadius) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:562: warning: Member ensureModeConf() (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:563: warning: Member conf_lprobs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:564: warning: Member conf_masses() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:565: warning: Member get_original_position(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:566: warning: Member get_isotopeNo() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:567: warning: Member get_lProbs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:568: warning: Member get_masses() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:569: warning: Member get_atom_lProbs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:570: warning: Member get_atom_masses() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:571: warning: Member extend(double new_threshold, bool do_sort=true) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:60: warning: found documented return type for IsoSpec::Marginal::Marginal that does not return anything /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:241: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:242: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:243: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:207: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:146: warning: Member operator()(size_t m1, size_t m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:262: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:263: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:264: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:265: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:266: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:267: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:268: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:272: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:272: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:272: warning: found documented return type for IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal that does not return anything /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented. ting code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform_incl.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/python-build.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound pod_vector... Generating docs for compound unsafe_pod_vector... Generating docs for compound ws_match_res... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::FixedEnvelope... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoLayeredGeneratorTemplate... Generating docs for compound IsoSpec::IsoOrderedGeneratorTemplate... Generating docs for compound IsoSpec::IsoStochasticGeneratorTemplate... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::LayeredMarginal... Generating docs for compound IsoSpec::LoggingMarginal... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::ProbAndConfPtr... Ge/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:473: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:504: warning: Member probeConfigurationIdx(int idx) (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:508: warning: Member conf_lprobs() const (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:509: warning: Member conf_masses() const (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:511: warning: Member get_original_position(int idx) const (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:455: warning: The following parameter of IsoSpec::SingleAtomMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:473: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:129: warning: Member operator()(size_t i, size_t j) (function) of class IsoSpec::TableOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. nerating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::SingleAtomMarginal... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 3261/65536 hits=17845 misses=3351 symbol lookup cache used 3109/65536 hits=24371 misses=3109 finished... make[5]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [100%] Built target html_doc make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Doxygen-based PDF format documentation # As of 20251016, pdflatex refman.tex fails. # dh_auto_build -O--buildsystem=cmake -- pdf_doc # sed-based replacement of the cloudflare URL with the MathJax.js file from the # libjs-mathjax package sh debian/replace-mathjax-cloudflare-url-local-file.sh make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' dh_auto_test -O--buildsystem=pybuild pybuild --test -i python{version} -p 3.13 I: pybuild base:311: cd /build/reproducible-path/isospec-2.3.2/.pybuild/cpython3_3.13_isospec/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN rm -fr -- /tmp/dh-xdg-rundir-x6BTUS1z create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars rm -fr -- debian/.debhelper/generated/libisospec\+\+-dev/ debian/libisospec\+\+-dev/ debian/tmp/ debian/.debhelper/generated/libisospec\+\+2t64/ debian/libisospec\+\+2t64/ debian/.debhelper/generated/python3-isospec/ debian/python3-isospec/ debian/.debhelper/generated/libisospec\+\+-doc/ debian/libisospec\+\+-doc/ rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core # The C++ lib dh_auto_install -O--buildsystem=cmake install -m0755 -d /build/reproducible-path/isospec-2.3.2/debian/tmp cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/isospec-2.3.2/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec++/FindIsoSpec++.cmake -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec++/IsoSpec++Config.cmake -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libisospec++.pc -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png -- Installing: 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/build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fasta_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/operators_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classpod__vector-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/unity-build_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/python-build_8cpp_source.html -- Installing: 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/build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doxygen.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/docd.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/splitbar.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/element__tables_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderclosedd.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doc.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_h.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/index.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_h.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dir_b34879a1d7d063b9f8968807d451b7a6.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/btrd_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderopend.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fasta_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions_vars.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/annotated.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespace_iso_spec.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/summator_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/platform_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator.html -- 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/build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions_func.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/mman_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classpod__vector.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/structws__match__res-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/open.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_hd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/bc_s.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/plus.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/minus.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_a.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/cwrapper_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_6.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_10.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_6.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_0.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_b.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_2.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_b.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_7.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/search.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_3.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_1.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_6.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_10.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_seld.svg -- Installing: 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Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_f.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_e.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_a.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_3.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_13.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_4.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_c.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_d.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_c.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_d.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_e.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_e.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/search.css -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_1.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_4.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_sel.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_3.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_f.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_b.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/namespaces_0.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_1.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_9.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_2.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_8.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_12.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_0.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_5.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_5.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_d.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_8.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_a.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_1.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_a.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_0.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_11.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_8.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_9.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/searchdata.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_7.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_5.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_2.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_3.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_9.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_d.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/sync_on.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classes.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/menudata.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_b.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/mman_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_sd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tabs.css -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/structws__match__res.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/element__tables_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/splitbard.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_f.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_g.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/sync_off.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespacemembers.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/minusd.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/allocator_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespacemembers_func.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TSummator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TableOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SSummator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_MarginalTrek.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_FixedEnvelope.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoGenerator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Allocator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_PrecalculatedMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_KeyHasher.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrderMarginalDescending.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ProbAndConfPtr.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Iso.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoOrderedGeneratorTemplate.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoStochasticGeneratorTemplate.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SingleAtomMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Marginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_DirtyAllocator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfEqual.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/pod_vector.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LoggingMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Summator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoLayeredGeneratorTemplate.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoThresholdGenerator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_OrderMarginalsBySizeDecresing.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrderMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/ws_match_res.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LayeredMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/unsafe_pod_vector.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ReverseOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++ -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/radiolabelling.cpp -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/water.cpp -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/COMPILING -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/binned_spectrum.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/fasta.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/water.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/custom_elements.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/radiolabelling.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R/radiolabelling.R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R/water.R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2.3.2 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.a -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++ -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/conf.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/marginalTrek++.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/btrd.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/platform.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/pod_vector.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/fixedEnvelopes.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/cwrapper.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/summator.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/element_tables.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/misc.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/fasta.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoMath.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/allocator.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/platform_incl.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoSpec++.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/operators.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/mman.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/dirtyAllocator.h make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Python module dh_auto_install -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/isospec-2.3.2/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/isospec-2.3.2/debian/tmp I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir # Now remove the links, that we'll provide using d/*.links # So that we can use libIsoSpec++.so.* in d/*.install rm -f debian/tmp/usr/lib/*/libIsoSpec++.so rm -f debian/tmp/usr/lib/*/libIsoSpec++.so.2 make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' dh_install -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/IsoSpec\+\+ debian/libisospec\+\+-dev//usr/include/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.a debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/cmake cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec\+\+ debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/cmake/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libisospec\+\+.pc debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/pkgconfig/ install -m0755 -d debian/libisospec\+\+2t64//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+2t64//usr/lib/x86_64-linux-gnu/ install -m0755 -d debian/libisospec\+\+-doc//usr/share/doc cp --reflink=auto -a debian/tmp/usr/share/doc/isospec debian/libisospec\+\+-doc//usr/share/doc/ dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/copyright debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/copyright install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64 install -p -m0644 debian/copyright debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/copyright install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/copyright debian/python3-isospec/usr/share/doc/python3-isospec/copyright install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc install -p -m0644 debian/copyright debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/copyright install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc-base/ install -p -m0644 debian/libisospec\+\+-doc.doc-base debian/libisospec\+\+-doc/usr/share/doc-base/libisospec\+\+-doc.libisospec\+\+ dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64 install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/dh_installchangelogs.dch.trimmed debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/changelog install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/.debhelper/generated/libisospec\+\+-dev/dh_installchangelogs.dch.trimmed debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc install -p -m0644 debian/.debhelper/generated/libisospec\+\+-doc/dh_installchangelogs.dch.trimmed debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/.debhelper/generated/python3-isospec/dh_installchangelogs.dch.trimmed debian/python3-isospec/usr/share/doc/python3-isospec/changelog.Debian install -p -m0644 ./CHANGELOG debian/python3-isospec/usr/share/doc/python3-isospec/changelog dh_installman -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LoggingMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/ws_match_res.3 debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package libisospec++-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:166: skipping package libisospec++2t64 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:166: skipping package libisospec++-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=isospec, binary packages=['python3-isospec'] D: dh_python3 dh_python3:205: processing package python3-isospec... D: dh_python3 fs:50: moving files from debian/python3-isospec/usr/lib/python3.13/dist-packages to debian/python3-isospec/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.13 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:421: renaming libIsoSpecCppPy.so to libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so D: dh_python3 fs:179: Writing INSTALLER in debian/python3-isospec/usr/lib/python3/dist-packages/isospecpy-2.3.2.dist-info D: dh_python3 fs:190: Deleting RECORD in debian/python3-isospec/usr/lib/python3/dist-packages/isospecpy-2.3.2.dist-info D: dh_python3 fs:338: package python3-isospec details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-isospec/usr/lib/python3/dist-packages/isospecpy-2.3.2.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-isospec D: dh_python3 pydist:175: trying to find dependency for cffi (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:220: dependency: requirement already has hardcoded version D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3:any', 'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/usr/share/lintian/overrides install -p -m0644 debian/libisospec\+\+2t64.lintian-overrides debian/libisospec\+\+2t64/usr/share/lintian/overrides/libisospec\+\+2t64 dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu rm -f debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so ln -s libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so install -m0755 -d debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu rm -f debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2 ln -s libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2 dh_strip_nondeterminism -O--buildsystem=pybuild Using 1762380009 as canonical time Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_fd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_ad.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_bd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/open.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbard.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/libisospec++-dev cd debian/libisospec++2t64 cd debian/python3-isospec cd debian/libisospec++-doc chmod a-x usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_LoggingMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 chmod a-x usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian gzip -9nf usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian gzip -9nf usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_LoggingMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' dh_fixperms -O--buildsystem=pybuild find debian/libisospec\+\+-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+2t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+2t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++2t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+2t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/man debian/libisospec\+\+-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz -- debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 dwz -- debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so dwz: debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.a strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9/f311289d1532e55c3680ac28eab799e9a43b81.debug chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9/f311289d1532e55c3680ac28eab799e9a43b81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 objcopy --add-gnu-debuglink debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9/f311289d1532e55c3680ac28eab799e9a43b81.debug debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc ln -s libisospec\+\+2t64 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc/libisospec\+\+2t64-dbgsym install -m0755 -d debian/.debhelper/libisospec\+\+2t64 dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/libisospec\+\+-dev/DEBIAN/shlibs rm -f debian/libisospec\+\+2t64/DEBIAN/shlibs install -m0755 -d debian/libisospec\+\+2t64/DEBIAN echo "libIsoSpec++ 2 libisospec++2t64 (>= 2.3.2)" >> debian/libisospec\+\+2t64/DEBIAN/shlibs chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/shlibs mv debian/.debhelper/generated/libisospec\+\+2t64/triggers.new debian/.debhelper/generated/libisospec\+\+2t64/triggers mv debian/libisospec\+\+2t64.substvars.new debian/libisospec\+\+2t64.substvars rm -f debian/python3-isospec/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/DEBIAN dpkg-shlibdeps -Tdebian/libisospec\+\+2t64.substvars debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 install -m0755 -d debian/python3-isospec/DEBIAN dpkg-shlibdeps -Tdebian/python3-isospec.substvars debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN install -m0755 -d debian/libisospec\+\+2t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/triggers debian/libisospec\+\+2t64/DEBIAN/triggers install -m0755 -d debian/python3-isospec/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/postinst cat debian/python3-isospec.postinst.debhelper >> debian/python3-isospec/DEBIAN/postinst chmod 0755 -- debian/python3-isospec/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/prerm cat debian/python3-isospec.prerm.debhelper >> debian/python3-isospec/DEBIAN/prerm chmod 0755 -- debian/python3-isospec/DEBIAN/prerm install -m0755 -d debian/libisospec\+\+-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN echo misc:Depends= >> debian/libisospec++-dev.substvars echo misc:Pre-Depends= >> debian/libisospec++-dev.substvars dpkg-gencontrol -plibisospec\+\+-dev -ldebian/changelog -Tdebian/libisospec\+\+-dev.substvars -cdebian/control -Pdebian/libisospec\+\+-dev install -m0755 -d debian/libisospec\+\+2t64/DEBIAN echo misc:Depends= >> debian/libisospec++2t64.substvars echo misc:Pre-Depends= >> debian/libisospec++2t64.substvars install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/.debhelper/libisospec\+\+2t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libisospec\+\+2t64-dbgsym -DDepends="libisospec++2t64 (= \${binary:Version})" -DDescription="debug symbols for libisospec++2t64" -DBuild-Ids=d9f311289d1532e55c3680ac28eab799e9a43b81 -DSection=debug -UReplaces -UBreaks install -m0755 -d debian/libisospec\+\+-doc/DEBIAN echo misc:Depends= >> debian/libisospec++-doc.substvars echo misc:Pre-Depends= >> debian/libisospec++-doc.substvars dpkg-gencontrol -plibisospec\+\+-doc -ldebian/changelog -Tdebian/libisospec\+\+-doc.substvars -cdebian/control -Pdebian/libisospec\+\+-doc install -m0755 -d debian/python3-isospec/DEBIAN echo misc:Depends= >> debian/python3-isospec.substvars echo misc:Pre-Depends= >> debian/python3-isospec.substvars dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -cdebian/control -Pdebian/python3-isospec chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/control chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/control chmod 0644 -- debian/python3-isospec/DEBIAN/control chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/libisospec\+\+2t64 chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN install -m0755 -d debian/libisospec\+\+2t64/DEBIAN install -m0755 -d debian/python3-isospec/DEBIAN install -m0755 -d debian/libisospec\+\+-doc/DEBIAN cd debian/libisospec++2t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-isospec >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/md5sums cd debian/.debhelper/libisospec++2t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/libisospec\+\+-dev .. dpkg-deb --root-owner-group --build debian/libisospec\+\+2t64 .. dpkg-deb --root-owner-group --build debian/.debhelper/libisospec\+\+2t64/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-isospec .. dpkg-deb --root-owner-group --build debian/libisospec\+\+-doc .. dpkg-deb: building package 'libisospec++-dev' in '../libisospec++-dev_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++2t64' in '../libisospec++2t64_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++2t64-dbgsym' in '../libisospec++2t64-dbgsym_2.3.2-1_amd64.deb'. dpkg-deb: building package 'python3-isospec' in '../python3-isospec_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++-doc' in '../libisospec++-doc_2.3.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../isospec_2.3.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../isospec_2.3.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2328783 and its subdirectories I: Current time: Wed Dec 9 14:47:50 -12 2026 I: pbuilder-time-stamp: 1796870870 Thu Nov 6 20:24:50 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Thu Nov 6 20:24:50 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Thu Nov 6 20:24:50 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Thu Nov 6 20:24:50 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-rMXk1w' ==================================================================================== Thu Nov 6 20:24:51 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "2 isospec unstable /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO 2.3.2-1" as arguments. Thu Nov 6 20:24:51 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-yHVQS9pA" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 6 20:24:52 UTC 2025 I: Downloading source for unstable/isospec=2.3.2-1 Reading package lists... NOTICE: 'isospec' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/isospec.git Please use: git clone https://salsa.debian.org/debichem-team/isospec.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2212 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (dsc) [2477 B] Get:2 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (tar) [2176 kB] Get:3 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (diff) [33.7 kB] Fetched 2212 kB in 0s (48.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'isospec' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/isospec.git Please use: git clone https://salsa.debian.org/debichem-team/isospec.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2212 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (dsc) [2477 B] Get:2 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (tar) [2176 kB] Get:3 http://deb.debian.org/debian unstable/main isospec 2.3.2-1 (diff) [33.7 kB] Fetched 2212 kB in 0s (48.9 MB/s) Download complete and in download only mode ============================================================================= Re-Building isospec in unstable on amd64 on ionos1-amd64 now. Date: Thu Nov 6 20:24:52 UTC 2025 Date UTC: Thu Nov 6 20:24:52 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.25H844RO + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/pbuilderrc_XoGN + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' isospec = debian-installer -o isospec = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' isospec = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/pbuilderrc_XoGN --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b2 --logfile b2/build.log isospec_2.3.2-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 7 10:24:53 +14 2025 I: pbuilder-time-stamp: 1762460693 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [isospec_2.3.2-1.dsc] I: copying [./isospec_2.3.2.orig.tar.gz] I: copying [./isospec_2.3.2-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./isospec_2.3.2-1.dsc: no acceptable signature found dpkg-source: info: extracting isospec in isospec-2.3.2 dpkg-source: info: unpacking isospec_2.3.2.orig.tar.gz dpkg-source: info: unpacking isospec_2.3.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying library-version.patch dpkg-source: info: applying header-file-inclusion.patch dpkg-source: info: applying disable-pdf-refman-generation.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 6 20:25 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 nocheck' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=024c32cd1e424c3582594181291b96b0 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2662683 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/pbuilderrc_XoGN --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b2 --logfile b2/build.log isospec_2.3.2-1.dsc' SUDO_GID=110 SUDO_HOME=/var/lib/jenkins SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), quilt, dh-exec, librsvg2-bin, cmake, d-shlibs, dh-python, python3-dev, python3-setuptools, pybuild-plugin-pyproject, python3-cffi, python3-scikit-build-core, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on quilt; however: Package quilt is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on librsvg2-bin; however: Package librsvg2-bin is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-cffi; however: Package python3-cffi is not installed. pbuilder-satisfydepends-dummy depends on python3-scikit-build-core; however: Package python3-scikit-build-core is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} diffstat{a} doxygen{a} dwz{a} ed{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-mathjax{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4t64{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu76{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libopenjp2-7{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} libptexenc1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librsvg2-2{a} librsvg2-bin{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsynctex2{a} libtasn1-6{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libz3-4{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} pybuild-plugin-pyproject{a} python3{a} python3-autocommand{a} python3-build{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pathspec{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-scikit-build-core{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} quilt{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-luatex{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus default-jre dvisvgm fonts-droid-fallback krb5-locales less libarchive-cpio-perl libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl librsvg2-common libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lynx ps2eps psmisc publicsuffix ruby tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 353 MB of archives. After unpacking 1232 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 30 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 46 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.17.0-1 [409 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 66 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 diffstat amd64 1.68-1 [35.2 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-10 [26.0 MB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libclang-cpp19 amd64 1:19.1.7-10 [13.1 MB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libclang1-19 amd64 1:19.1.7-10 [7732 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 ed amd64 1.22.2-1 [62.9 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 99 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.06.0~dfsg-3 [149 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.06.0~dfsg-3 [479 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-17 [112 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-17 [47.3 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-17 [52.1 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.14-1 [255 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.43-2 [48.3 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-16 [16.0 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b3 [65.1 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.06.0~dfsg-3 [2909 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.06.0~dfsg-3 [50.6 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 33-2 [5852 B] Get: 135 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.1-2 [1547 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libcairo-gobject2 amd64 1.18.4-1+b1 [130 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.2-1 [564 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [313 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.4+dfsg-1 [144 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2025.20250727.75242+ds-4 [154 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b2 [25.6 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2025.20250727.75242+ds-4 [50.5 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 librsvg2-2 amd64 2.61.3+dfsg-2 [1838 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 librsvg2-bin amd64 2.61.3+dfsg-2 [2001 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2025.20250727.75242+ds-4 [58.2 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1+b1 [341 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-4 [99.4 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [59.2 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 lmodern all 2.005-1 [9480 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1.1 [350 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-4 [36.2 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-cffi-backend amd64 2.0.0-2 [95.1 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-ply all 3.11-9 [62.9 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-pycparser all 2.23-1 [78.4 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-cffi all 2.0.0-2 [90.4 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-metadata all 0.9.1-2 [21.6 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-scikit-build-core all 0.11.6-1 [122 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 quilt all 0.68-1 [437 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2025.20250727.75242+ds-4 [7261 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2025.20250927-4 [23.1 MB] Get: 217 http://deb.debian.org/debian unstable/main amd64 texlive-font-utils all 2025.20250927-3 [6979 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2025.20250927-4 [4991 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 texlive-luatex all 2025.20250927-4 [36.0 MB] Get: 220 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2025.20250927-4 [1319 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2025.20250927-4 [8509 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2025.20250927-4 [23.6 MB] Get: 223 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2025.20250927-3 [27.7 MB] Get: 224 http://deb.debian.org/debian unstable/main amd64 texlive-plain-generic all 2025.20250927-3 [29.9 MB] Fetched 353 MB in 58s (6074 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20734 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21749 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../013-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../014-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... 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Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libavahi-client3:amd64 (0.8-17) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libclang-cpp19 (1:19.1.7-10) ... Setting up libpython3.13:amd64 (3.13.9-1) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:amd64 (1.56.3-2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up doxygen (1.9.8+ds-2.1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libpython3.13-dev:amd64 (3.13.9-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up lmodern (2.005-1) ... Setting up libcairo-gobject2:amd64 (1.18.4-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-2) ... Setting up python3-pathspec (0.12.1-1) ... Setting up libcups2t64:amd64 (2.4.14-1) ... Setting up python3-cffi-backend:amd64 (2.0.0-2) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.17.0-1) ... Setting up python3-pyproject-metadata (0.9.1-2) ... Setting up python3.13-dev (3.13.9-1) ... Setting up preview-latex-style (13.2-1.1) ... Setting up python3-ply (3.11-9) ... Setting up python3-typeguard (4.4.4-1) ... Setting up debhelper (13.28) ... Setting up dh-exec (0.30) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-pycparser (2.23-1) ... Setting up librsvg2-2:amd64 (2.61.3+dfsg-2) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up texlive-binaries (2025.20250727.75242+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up cmake (4.1.1+really3.31.6-2) ... Setting up python3-build (1.2.2-4) ... Setting up texlive-base (2025.20250927-4) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up libgs10-common (10.06.0~dfsg-3) ... Setting up librsvg2-bin (2.61.3+dfsg-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-scikit-build-core (0.11.6-1) ... Setting up texlive-luatex (2025.20250927-4) ... Setting up pybuild-plugin-pyproject (6.20250414) ... Setting up python3-cffi (2.0.0-2) ... Setting up texlive-plain-generic (2025.20250927-3) ... Setting up texlive-font-utils (2025.20250927-3) ... Setting up texlive-latex-base (2025.20250927-4) ... Setting up texlive-latex-recommended (2025.20250927-4) ... Setting up texlive-pictures (2025.20250927-4) ... Setting up texlive-fonts-recommended (2025.20250927-4) ... Setting up libgs10:amd64 (10.06.0~dfsg-3) ... Setting up texlive-latex-extra (2025.20250927-3) ... Setting up ghostscript (10.06.0~dfsg-3) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for tex-common (6.19) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/isospec-2.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../isospec_2.3.2-1_source.changes dpkg-buildpackage: info: source package isospec dpkg-buildpackage: info: source version 2.3.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_quilt_unpatch quilt --quiltrc /dev/null pop -a || test $? = 2 Removing patch disable-pdf-refman-generation.patch Restoring man/CMakeLists.txt Removing patch header-file-inclusion.patch Restoring Examples/C++/water.cpp Restoring Examples/C++/radiolabelling.cpp Removing patch library-version.patch Restoring CMakeLists.txt No patches applied rm -rf .pc rm -rf obj-x86_64-linux-gnu rm -rf build rm -f compile_commands.json rm -rf .pc rm -rf IsoSpecPy.egg-info rm -rf .pybuild/ rm -rf tmp-install/ rm -rf IsoSpec++/IsoSpec++ rm -rf IsoSpecPy/build/ # Now the default target dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars debian/files rm -fr -- debian/libisospec\+\+-dev/ debian/tmp/ debian/libisospec\+\+2t64/ debian/python3-isospec/ debian/libisospec\+\+-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' debian/rules binary dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_quilt_patch quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch library-version.patch patching file CMakeLists.txt Applying patch header-file-inclusion.patch patching file Examples/C++/radiolabelling.cpp patching file Examples/C++/water.cpp Applying patch disable-pdf-refman-generation.patch patching file man/CMakeLists.txt Now at patch disable-pdf-refman-generation.patch dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.3.2 -DISOSPEC_LIB_SOVERSION=2 cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.3.2 -DISOSPEC_LIB_SOVERSION=2 .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Library version: 2.3.2 Library soname: 2 Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/reproducible-path/isospec-2.3.2 -- CMAKE_BINARY_DIR: /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. Now configuring IsoSpec++/ for IsoSpec Library version: 2.3.2 Library soname: 2 -- Configuring done (3.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED ISOSPEC_LIB_SOVERSION ISOSPEC_LIB_VERSION -- Build files have been written to: /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core # The C++ lib dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make -f src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [ 25%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/c++ -DIsoSpec___shared_EXPORTS -I/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ -I/build/reproducible-path/isospec-2.3.2/src/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -pedantic -fPIC -MD -MT src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [ 50%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/c++ -I/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ -I/build/reproducible-path/isospec-2.3.2/src/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -pedantic -fPIC -MD -MT src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp In file included from /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp:30: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp: In constructor ‘IsoSpec::Iso::Iso()’: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:53:25: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 53 | isotopeNumbers(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:54:21: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 54 | atomCounts(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:57:26: warning: allocation of insufficient size ‘0’ for type ‘IsoSpec::Marginal*’ with size ‘8’ [-Walloc-size] 57 | marginals(new Marginal*[0]) | ^ In file included from /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp:30: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp: In constructor ‘IsoSpec::Iso::Iso()’: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:53:25: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 53 | isotopeNumbers(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:54:21: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] 54 | atomCounts(new int[0]), | ^ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:57:26: warning: allocation of insufficient size ‘0’ for type ‘IsoSpec::Marginal*’ with size ‘8’ [-Walloc-size] 57 | marginals(new Marginal*[0]) | ^ [ 75%] Linking CXX shared library libIsoSpec++.so cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/IsoSpec++-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libIsoSpec++.so.2 -o libIsoSpec++.so.2.3.2 "CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o" cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_symlink_library libIsoSpec++.so.2.3.2 libIsoSpec++.so.2 libIsoSpec++.so make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [ 75%] Built target IsoSpec++-shared [100%] Linking CXX static library libIsoSpec++.a cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -P CMakeFiles/IsoSpec++-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-static.dir/link.txt --verbose=1 /usr/bin/ar qc libIsoSpec++.a "CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o" /usr/bin/ranlib libIsoSpec++.a make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [100%] Built target IsoSpec++-static make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Python module dh_auto_build --buildsystem=pybuild pybuild --build -i python{version} -p 3.13 I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/isospec-2.3.2/.pybuild/cpython3_3.13_isospec * Building wheel... *** scikit-build-core 0.11.6 using CMake 3.31.6 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmp9a75qsap/build/CMakeInit.txt -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.2s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmp9a75qsap/build *** Building project with Unix Makefiles... gmake[2]: Entering directory '/tmp/tmp9a75qsap/build' [ 50%] Building CXX object CMakeFiles/IsoSpecCppPy.dir/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp.o [100%] Linking CXX shared library libIsoSpecCppPy.so [100%] Built target IsoSpecCppPy gmake[2]: Leaving directory '/tmp/tmp9a75qsap/build' *** Installing project into wheel... -- Install configuration: "Release" -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/libIsoSpecCppPy.so -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++ -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/dirtyAllocator.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/platform.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/platform_incl.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/fasta.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/conf.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/fixedEnvelopes.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/misc.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/allocator.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/summator.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/mman.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/isoMath.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/operators.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/pod_vector.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/cwrapper.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/isoSpec++.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/btrd.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/marginalTrek++.h -- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/element_tables.h *** Making wheel... *** Created isospecpy-2.3.2-cp313-cp313-linux_x86_64.whl Successfully built isospecpy-2.3.2-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module # The Doxygen-based HTML format documentation dh_auto_build -O--buildsystem=cmake -- html_doc cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" html_doc VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc make[3]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend make[5]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/man /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/man /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build make[5]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [100%] Doxygen-based developer html documentation generation cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/man && doxygen doxyfile warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1256 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1545 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1833 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1849 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1915 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2013 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2206 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2257 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2264 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2488 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSp/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:40: warning: Compound IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:460: warning: Compound IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:586: warning: Compound IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:525: warning: Compound IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:433: warning: Compound IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:32: warning: Compound pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:152: warning: Compound ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:394: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:473: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command ec++/mman.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform_incl.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform_incl.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/python-build.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/python-build.cpp... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h... Preprocessing /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp... Parsing file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h... Genera/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:194: warning: Member iterator (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:195: warning: Member const_iterator (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:196: warning: Member value_type (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:197: warning: Member size_type (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:198: warning: Member reference (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:199: warning: Member const_reference (typedef) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:39: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:54: warning: Member operator=(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:64: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:74: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:82: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:94: warning: Member reserve(size_t n) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:100: warning: Member resize(size_t new_size) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:114: warning: Member resize_and_wipe(size_t new_size) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:122: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:129: warning: Member push_back(const T &val) (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:137: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:143: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:149: warning: Member size() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:154: warning: Member capacity() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:159: warning: Member data() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:164: warning: Member data() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:169: warning: Member empty() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:174: warning: Member back() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:180: warning: Member pop_back() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:187: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:201: warning: Member begin() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:202: warning: Member begin() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:203: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:204: warning: Member end() noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:205: warning: Member end() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:206: warning: Member cend() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:208: warning: Member front() const noexcept (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:214: warning: Member clear() (function) of class pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:372: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:373: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:374: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:375: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:376: warning: Member reference (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:377: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:234: warning: Member init() (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:242: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:261: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:272: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:278: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:292: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:300: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:307: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:315: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:321: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:327: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:332: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:337: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:342: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:347: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:352: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:358: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:365: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:379: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:380: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:381: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:382: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:383: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:384: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:386: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h:392: warning: Member clear() (function) of class unsafe_pod_vector is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:153: warning: Member res1 (variable) of struct ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:154: warning: Member res2 (variable) of struct ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/cwrapper.h:155: warning: Member flow (variable) of struct ws_match_res is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:307: warning: Member IsoOrderedGenerator (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:583: warning: Member IsoLayeredGenerator (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:691: warning: Member IsoStochasticGenerator (typedef) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp:135: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:37: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:149: warning: Member random_gen(std::random_device{}()) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:150: warning: Member stdunif(0.0, 1.0) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:152: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, size_t n, size_t start, size_t end) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, size_t size, const char *prefix="") (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:99: warning: Member printVector(const pod_vector< T > &vec) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:104: warning: Member printOffsets(const T **array, size_t size, const T *offset, const char *prefix="") (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:113: warning: Member printNestedArray(const T **array, const int *shape, size_t size) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:138: warning: Member dealloc_table(T *tbl, int dim) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:147: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:156: warning: Member get_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:167: warning: Member get_inverse_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h:178: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of namespace IsoSpec is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp:53: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented: parameter 'isotopeNo' parameter 'lprobs' parameter 'res' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:70: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:71: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:73: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:82: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:83: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:86: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:88: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:89: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:90: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:92: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:93: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:94: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:95: warning: Member release_everything() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:98: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:99: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:100: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:102: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:103: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:105: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:106: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:107: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:108: warning: Member shift_mass(double shift) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:109: warning: Member resample(size_t ionic_current, double beta_bias=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:111: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:112: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:113: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:115: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:116: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:117: warning: Member AbyssalWassersteinDistance(FixedEnvelope &other, double abyss_depth, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:118: warning: Member WassersteinMatch(FixedEnvelope &other, double flow_distance, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:125: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:170: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:172: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:181: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:216: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:121: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:122: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:194: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:199: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:211: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:218: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:230: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:235: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:236: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:132: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:139: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:152: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:166: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:167: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:42: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:43: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:44: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:45: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:46: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:47: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:48: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:49: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:50: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:51: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:52: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:53: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:54: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h:241: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (friend) of class IsoSpec::FixedEnvelope is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\use_nominal_masses' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:112: warning: Found unknown command '\add_water' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:107: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented: parameter 'use_nominal_masses' parameter 'add_water' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:504: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:506: warning: Member IsoLayeredGeneratorTemplate(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:520: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:555: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:557: warning: Member get_conf_by_indexes(int *space) const (function) of class IsoSpec::IsoLayeredGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:291: warning: Member get_conf_by_indexes(int *space) (function) of class IsoSpec::IsoOrderedGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:598: warning: Member IsoStochasticGeneratorTemplate(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0, std::mt19937 &rdvariate_gen=random_gen) (function) of class IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:600: warning: Member count() const (function) of class IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:685: warning: Member get_indexes(int *space) (function) of class IsoSpec::IsoStochasticGeneratorTemplate is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:91: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:187: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:71: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:360: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:360: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h:360: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:394: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:420: warning: Member conf_lprobs() const (function) of class IsoSpec::LayeredMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:421: warning: Member conf_masses() const (function) of class IsoSpec::LayeredMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:376: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:386: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:394: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:532: warning: Member LoggingMarginal(T &&m) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:533: warning: Member LoggingMarginal(T &&m, int tabSize, int hashSize) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:539: warning: Member getModeLProb() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:540: warning: Member get_lProb(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:541: warning: Member get_prob(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:542: warning: Member get_mass(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:543: warning: Member get_lProbs_ptr() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:544: warning: Member get_conf(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:545: warning: Member get_no_confs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:546: warning: Member probeConfigurationIdx(int idx) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:547: warning: Member get_min_mass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:548: warning: Member get_max_mass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:549: warning: Member getModeMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:550: warning: Member getLightestConfMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:551: warning: Member getHeaviestConfMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:552: warning: Member getMonoisotopicConfMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:553: warning: Member getAtomAverageMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:554: warning: Member variance() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:555: warning: Member getTheoreticalAverageMass() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:556: warning: Member getLogSizeEstimate(double logEllipsoidRadius) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:562: warning: Member ensureModeConf() (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:563: warning: Member conf_lprobs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:564: warning: Member conf_masses() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:565: warning: Member get_original_position(int idx) const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:566: warning: Member get_isotopeNo() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:567: warning: Member get_lProbs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:568: warning: Member get_masses() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:569: warning: Member get_atom_lProbs() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:570: warning: Member get_atom_masses() const (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:571: warning: Member extend(double new_threshold, bool do_sort=true) (function) of class IsoSpec::LoggingMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:60: warning: found documented return type for IsoSpec::Marginal::Marginal that does not return anything /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:241: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:242: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:243: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:207: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:146: warning: Member operator()(size_t m1, size_t m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:262: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:263: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:264: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:265: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:266: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:267: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:268: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:272: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:272: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:272: warning: found documented return type for IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal that does not return anything /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented. ting code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/dirtyAllocator.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/element_tables.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fasta.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/fixedEnvelopes.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoMath.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/misc.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/mman.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/platform_incl.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/pod_vector.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/python-build.cpp... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h... Generating code for file /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound pod_vector... Generating docs for compound unsafe_pod_vector... Generating docs for compound ws_match_res... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::FixedEnvelope... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoLayeredGeneratorTemplate... Generating docs for compound IsoSpec::IsoOrderedGeneratorTemplate... Generating docs for compound IsoSpec::IsoStochasticGeneratorTemplate... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::LayeredMarginal... Generating docs for compound IsoSpec::LoggingMarginal... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::ProbAndConfPtr... Ge/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:473: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:504: warning: Member probeConfigurationIdx(int idx) (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:508: warning: Member conf_lprobs() const (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:509: warning: Member conf_masses() const (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:511: warning: Member get_original_position(int idx) const (function) of class IsoSpec::SingleAtomMarginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:91: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:176: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:168: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:455: warning: The following parameter of IsoSpec::SingleAtomMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/marginalTrek++.h:473: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/operators.h:129: warning: Member operator()(size_t i, size_t j) (function) of class IsoSpec::TableOrder is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. nerating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::SingleAtomMarginal... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 3261/65536 hits=17845 misses=3351 symbol lookup cache used 3109/65536 hits=24371 misses=3109 finished... make[5]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' [100%] Built target html_doc make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Doxygen-based PDF format documentation # As of 20251016, pdflatex refman.tex fails. # dh_auto_build -O--buildsystem=cmake -- pdf_doc # sed-based replacement of the cloudflare URL with the MathJax.js file from the # libjs-mathjax package sh debian/replace-mathjax-cloudflare-url-local-file.sh make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars rm -fr -- debian/.debhelper/generated/libisospec\+\+-dev/ debian/libisospec\+\+-dev/ debian/tmp/ debian/.debhelper/generated/libisospec\+\+2t64/ debian/libisospec\+\+2t64/ debian/.debhelper/generated/python3-isospec/ debian/python3-isospec/ debian/.debhelper/generated/libisospec\+\+-doc/ debian/libisospec\+\+-doc/ rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/isospec-2.3.2' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core # The C++ lib dh_auto_install -O--buildsystem=cmake install -m0755 -d /build/reproducible-path/isospec-2.3.2/debian/tmp cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/isospec-2.3.2/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec++/FindIsoSpec++.cmake -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec++/IsoSpec++Config.cmake -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libisospec++.pc -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.svg -- Installing: 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/build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderclosedd.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_a.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/annotated.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doxygen.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tabs.css -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_fd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespacemembers.html -- Installing: 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/build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_hd.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doxygen.css -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8cpp_source.html -- Installing: 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/build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/index.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/minus.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/operators_8h_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_ad.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/sync_off.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/plus.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/splitbar.png -- Installing: 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/build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LayeredMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_PrecalculatedMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ReverseOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LoggingMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ProbAndConfPtr.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SSummator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Iso.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_MarginalTrek.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoLayeredGeneratorTemplate.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_OrderMarginalsBySizeDecresing.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/ws_match_res.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoStochasticGeneratorTemplate.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TableOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_FixedEnvelope.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrderMarginalDescending.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_KeyHasher.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Marginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Summator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoOrderedGeneratorTemplate.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Allocator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_DirtyAllocator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrderMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoThresholdGenerator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TSummator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/pod_vector.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoGenerator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SingleAtomMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfEqual.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/unsafe_pod_vector.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++ -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/water.cpp -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/radiolabelling.cpp -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/COMPILING -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/custom_elements.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/radiolabelling.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/binned_spectrum.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/fasta.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/water.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R/water.R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R/radiolabelling.R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2.3.2 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.a -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++ -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/dirtyAllocator.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/platform.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/platform_incl.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/fasta.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/conf.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/fixedEnvelopes.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/misc.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/allocator.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/summator.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/mman.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoMath.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/operators.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/pod_vector.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/cwrapper.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoSpec++.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/btrd.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/marginalTrek++.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/element_tables.h make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Python module dh_auto_install -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/isospec-2.3.2/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/isospec-2.3.2/debian/tmp I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir # Now remove the links, that we'll provide using d/*.links # So that we can use libIsoSpec++.so.* in d/*.install rm -f debian/tmp/usr/lib/*/libIsoSpec++.so rm -f debian/tmp/usr/lib/*/libIsoSpec++.so.2 make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' dh_install -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/IsoSpec\+\+ debian/libisospec\+\+-dev//usr/include/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.a debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/cmake cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec\+\+ debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/cmake/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libisospec\+\+.pc debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/pkgconfig/ install -m0755 -d debian/libisospec\+\+2t64//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+2t64//usr/lib/x86_64-linux-gnu/ install -m0755 -d debian/libisospec\+\+-doc//usr/share/doc cp --reflink=auto -a debian/tmp/usr/share/doc/isospec debian/libisospec\+\+-doc//usr/share/doc/ dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/copyright debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/copyright install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64 install -p -m0644 debian/copyright debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/copyright install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/copyright debian/python3-isospec/usr/share/doc/python3-isospec/copyright install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc install -p -m0644 debian/copyright debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/copyright install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc-base/ install -p -m0644 debian/libisospec\+\+-doc.doc-base debian/libisospec\+\+-doc/usr/share/doc-base/libisospec\+\+-doc.libisospec\+\+ dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64 install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/dh_installchangelogs.dch.trimmed debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/changelog install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/.debhelper/generated/libisospec\+\+-dev/dh_installchangelogs.dch.trimmed debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog install -m0755 -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc install -p -m0644 debian/.debhelper/generated/libisospec\+\+-doc/dh_installchangelogs.dch.trimmed debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/.debhelper/generated/python3-isospec/dh_installchangelogs.dch.trimmed debian/python3-isospec/usr/share/doc/python3-isospec/changelog.Debian install -p -m0644 ./CHANGELOG debian/python3-isospec/usr/share/doc/python3-isospec/changelog dh_installman -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LoggingMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/ws_match_res.3 debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package libisospec++-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:166: skipping package libisospec++2t64 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:166: skipping package libisospec++-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=isospec, binary packages=['python3-isospec'] D: dh_python3 dh_python3:205: processing package python3-isospec... D: dh_python3 fs:50: moving files from debian/python3-isospec/usr/lib/python3.13/dist-packages to debian/python3-isospec/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.13 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:421: renaming libIsoSpecCppPy.so to libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so D: dh_python3 fs:179: Writing INSTALLER in debian/python3-isospec/usr/lib/python3/dist-packages/isospecpy-2.3.2.dist-info D: dh_python3 fs:190: Deleting RECORD in debian/python3-isospec/usr/lib/python3/dist-packages/isospecpy-2.3.2.dist-info D: dh_python3 fs:338: package python3-isospec details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-isospec/usr/lib/python3/dist-packages/isospecpy-2.3.2.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-isospec D: dh_python3 pydist:175: trying to find dependency for cffi (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:220: dependency: requirement already has hardcoded version D: dh_python3 depends:253: D={'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3 (<< 3.14)', 'python3:any', 'python3 (>= 3.13~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/usr/share/lintian/overrides install -p -m0644 debian/libisospec\+\+2t64.lintian-overrides debian/libisospec\+\+2t64/usr/share/lintian/overrides/libisospec\+\+2t64 dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu rm -f debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so ln -s libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so install -m0755 -d debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu rm -f debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2 ln -s libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2 dh_strip_nondeterminism -O--buildsystem=pybuild Using 1762380009 as canonical time Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbard.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_fd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_bd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_ad.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/open.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/closed.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/libisospec++-dev cd debian/libisospec++2t64 cd debian/python3-isospec cd debian/libisospec++-doc chmod a-x usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian chmod a-x usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_LoggingMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 chmod a-x usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian gzip -9nf usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_LoggingMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 gzip -9nf usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' dh_fixperms -O--buildsystem=pybuild find debian/libisospec\+\+-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+2t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++2t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+2t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-dev/usr/share/man debian/libisospec\+\+-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+2t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+2t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz -- debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 dwz -- debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so dwz: debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.a strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9/f311289d1532e55c3680ac28eab799e9a43b81.debug chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9/f311289d1532e55c3680ac28eab799e9a43b81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 objcopy --add-gnu-debuglink debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/d9/f311289d1532e55c3680ac28eab799e9a43b81.debug debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc ln -s libisospec\+\+2t64 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc/libisospec\+\+2t64-dbgsym install -m0755 -d debian/.debhelper/libisospec\+\+2t64 dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/libisospec\+\+-dev/DEBIAN/shlibs rm -f debian/libisospec\+\+2t64/DEBIAN/shlibs install -m0755 -d debian/libisospec\+\+2t64/DEBIAN echo "libIsoSpec++ 2 libisospec++2t64 (>= 2.3.2)" >> debian/libisospec\+\+2t64/DEBIAN/shlibs chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/shlibs mv debian/.debhelper/generated/libisospec\+\+2t64/triggers.new debian/.debhelper/generated/libisospec\+\+2t64/triggers mv debian/libisospec\+\+2t64.substvars.new debian/libisospec\+\+2t64.substvars rm -f debian/python3-isospec/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/DEBIAN dpkg-shlibdeps -Tdebian/libisospec\+\+2t64.substvars debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 install -m0755 -d debian/python3-isospec/DEBIAN dpkg-shlibdeps -Tdebian/python3-isospec.substvars debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy/libIsoSpecCppPy.cpython-313-x86_64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN install -m0755 -d debian/libisospec\+\+2t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/triggers debian/libisospec\+\+2t64/DEBIAN/triggers install -m0755 -d debian/python3-isospec/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/postinst cat debian/python3-isospec.postinst.debhelper >> debian/python3-isospec/DEBIAN/postinst chmod 0755 -- debian/python3-isospec/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/prerm cat debian/python3-isospec.prerm.debhelper >> debian/python3-isospec/DEBIAN/prerm chmod 0755 -- debian/python3-isospec/DEBIAN/prerm install -m0755 -d debian/libisospec\+\+-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN echo misc:Depends= >> debian/libisospec++-dev.substvars echo misc:Pre-Depends= >> debian/libisospec++-dev.substvars dpkg-gencontrol -plibisospec\+\+-dev -ldebian/changelog -Tdebian/libisospec\+\+-dev.substvars -cdebian/control -Pdebian/libisospec\+\+-dev install -m0755 -d debian/libisospec\+\+-doc/DEBIAN echo misc:Depends= >> debian/libisospec++-doc.substvars echo misc:Pre-Depends= >> debian/libisospec++-doc.substvars dpkg-gencontrol -plibisospec\+\+-doc -ldebian/changelog -Tdebian/libisospec\+\+-doc.substvars -cdebian/control -Pdebian/libisospec\+\+-doc install -m0755 -d debian/python3-isospec/DEBIAN echo misc:Depends= >> debian/python3-isospec.substvars echo misc:Pre-Depends= >> debian/python3-isospec.substvars dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -cdebian/control -Pdebian/python3-isospec install -m0755 -d debian/libisospec\+\+2t64/DEBIAN echo misc:Depends= >> debian/libisospec++2t64.substvars echo misc:Pre-Depends= >> debian/libisospec++2t64.substvars install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/.debhelper/libisospec\+\+2t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libisospec\+\+2t64-dbgsym -DDepends="libisospec++2t64 (= \${binary:Version})" -DDescription="debug symbols for libisospec++2t64" -DBuild-Ids=d9f311289d1532e55c3680ac28eab799e9a43b81 -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/libisospec\+\+2t64 chmod 0644 -- debian/python3-isospec/DEBIAN/control chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/control chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN install -m0755 -d debian/libisospec\+\+2t64/DEBIAN install -m0755 -d debian/python3-isospec/DEBIAN install -m0755 -d debian/libisospec\+\+-doc/DEBIAN cd debian/libisospec++2t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-isospec >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/md5sums chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums cd debian/.debhelper/libisospec++2t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/libisospec\+\+-dev .. dpkg-deb --root-owner-group --build debian/libisospec\+\+2t64 .. dpkg-deb --root-owner-group --build debian/.debhelper/libisospec\+\+2t64/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-isospec .. dpkg-deb --root-owner-group --build debian/libisospec\+\+-doc .. dpkg-deb: building package 'libisospec++2t64-dbgsym' in '../libisospec++2t64-dbgsym_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++2t64' in '../libisospec++2t64_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++-dev' in '../libisospec++-dev_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++-doc' in '../libisospec++-doc_2.3.2-1_all.deb'. dpkg-deb: building package 'python3-isospec' in '../python3-isospec_2.3.2-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../isospec_2.3.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../isospec_2.3.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2662683 and its subdirectories I: Current time: Fri Nov 7 10:36:08 +14 2025 I: pbuilder-time-stamp: 1762461368 + false + set +x Thu Nov 6 20:36:08 UTC 2025 I: Signing ./b2/isospec_2.3.2-1_amd64.buildinfo as isospec_2.3.2-1_amd64.buildinfo.asc Thu Nov 6 20:36:08 UTC 2025 I: Signed ./b2/isospec_2.3.2-1_amd64.buildinfo as ./b2/isospec_2.3.2-1_amd64.buildinfo.asc Thu Nov 6 20:36:08 UTC 2025 - build #2 for isospec/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Thu Nov 6 20:36:08 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-yHVQS9pA, removing. /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO: total 304 drwxrwxr-x 2 jenkins jenkins 4096 Nov 6 20:24 b1 drwxrwxr-x 2 jenkins jenkins 4096 Nov 6 20:36 b2 -rw-rw-r-- 1 jenkins jenkins 2477 Nov 5 22:58 isospec_2.3.2-1.dsc -rw------- 1 jenkins jenkins 291203 Nov 6 20:24 rbuildlog.3KjFBKD /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b1: total 3636 -rw-r--r-- 1 jenkins jenkins 287337 Nov 6 20:24 build.log -rw-r--r-- 1 jenkins jenkins 33740 Nov 6 20:24 isospec_2.3.2-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2477 Nov 6 20:24 isospec_2.3.2-1.dsc -rw-r--r-- 1 jenkins jenkins 12143 Nov 6 20:24 isospec_2.3.2-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 13025 Nov 6 20:24 isospec_2.3.2-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2669 Nov 6 20:24 isospec_2.3.2-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1597 Nov 6 20:24 isospec_2.3.2-1_source.changes -rw-r--r-- 1 jenkins jenkins 2176151 Nov 6 20:24 isospec_2.3.2.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 142360 Nov 6 20:24 libisospec++-dev_2.3.2-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 458384 Nov 6 20:24 libisospec++-doc_2.3.2-1_all.deb -rw-r--r-- 1 jenkins jenkins 347232 Nov 6 20:24 libisospec++2t64-dbgsym_2.3.2-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 76996 Nov 6 20:24 libisospec++2t64_2.3.2-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 116740 Nov 6 20:24 python3-isospec_2.3.2-1_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b2: total 3608 -rw-rw-r-- 1 jenkins jenkins 289066 Nov 6 20:36 build.log -rw-r--r-- 1 jenkins jenkins 33740 Nov 6 20:36 isospec_2.3.2-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2477 Nov 6 20:36 isospec_2.3.2-1.dsc -rw-rw-r-- 1 jenkins jenkins 12151 Nov 6 20:36 isospec_2.3.2-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 13033 Nov 6 20:36 isospec_2.3.2-1_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 2669 Nov 6 20:36 isospec_2.3.2-1_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1597 Nov 6 20:36 isospec_2.3.2-1_source.changes -rw-r--r-- 1 jenkins jenkins 2176151 Nov 6 20:36 isospec_2.3.2.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 142360 Nov 6 20:36 libisospec++-dev_2.3.2-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 458384 Nov 6 20:36 libisospec++-doc_2.3.2-1_all.deb -rw-r--r-- 1 jenkins jenkins 347232 Nov 6 20:36 libisospec++2t64-dbgsym_2.3.2-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 76996 Nov 6 20:36 libisospec++2t64_2.3.2-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 116692 Nov 6 20:36 python3-isospec_2.3.2-1_amd64.deb Thu Nov 6 20:36:08 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Thu Nov 6 20:36:09 UTC 2025 I: isospec_2.3.2-1_amd64.changes: Format: 1.8 Date: Wed, 05 Nov 2025 23:00:09 +0100 Source: isospec Binary: libisospec++-dev libisospec++-doc libisospec++2t64 libisospec++2t64-dbgsym python3-isospec Architecture: amd64 all Version: 2.3.2-1 Distribution: unstable Urgency: medium Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libisospec++-dev - Isotopic fine structure calculator (C++ development files) libisospec++-doc - Isotopic fine structure calculator (C++ API documentation) libisospec++2t64 - Isotopic fine structure calculator (C++ runtime) python3-isospec - Isotopic fine structure calculator for Python 3 Changes: isospec (2.3.2-1) unstable; urgency=medium . * New upstream release. . * Steer away from graphicsmagick and replace by librsvg2-bin for conversion of svg to png. . * libisospec++-dev: Drop Multi-Arch: same (Janitor pull request). Checksums-Sha1: 7e2bb246ad81b459849b44a2cdea9caf67cbdf7f 12143 isospec_2.3.2-1_amd64.buildinfo 833029913c6a5981acdd557a538143a16c90273f 142360 libisospec++-dev_2.3.2-1_amd64.deb edaab33063c1b523718a8d2e4c21a25b9a45329a 458384 libisospec++-doc_2.3.2-1_all.deb faa95e02583786af0c40888990968cfcead379af 347232 libisospec++2t64-dbgsym_2.3.2-1_amd64.deb 6f219ad5b8185c49686f7e61d6a098053e4def18 76996 libisospec++2t64_2.3.2-1_amd64.deb 4a3741095b09d547fe25c11850e74e8a275146a1 116740 python3-isospec_2.3.2-1_amd64.deb Checksums-Sha256: cf77e0605ff2723b34229a0f123951059ebee2ef3d4b852cbd38d9fca24db024 12143 isospec_2.3.2-1_amd64.buildinfo e94a54640152a2707174b7b61c90fcd6a46aef8930d83fbd21eb96e2944ebfff 142360 libisospec++-dev_2.3.2-1_amd64.deb c1c376516a5c4a92e267df1d21d59e87309c214d7daaee6cb6846f065bfb6b10 458384 libisospec++-doc_2.3.2-1_all.deb e02d25788826b41f60360064abc14cb5245bf07408d6552a397268aa816bf2eb 347232 libisospec++2t64-dbgsym_2.3.2-1_amd64.deb 653179cb68e6609583d8dce8b99b4241443c7f9163a3523029c626adda8c84f4 76996 libisospec++2t64_2.3.2-1_amd64.deb f480a5c0d0a48a51a270fccfc76d4535d5378cda24a9ea5a95a1b855eece9629 116740 python3-isospec_2.3.2-1_amd64.deb Files: 0ba1bffe0d8f6a5684389daca229a824 12143 science optional isospec_2.3.2-1_amd64.buildinfo 7a5af0a6ec85b0eafdf959a3071fb803 142360 libdevel optional libisospec++-dev_2.3.2-1_amd64.deb 7b3d2bd9e249671a467d4928fe5c1bd1 458384 doc optional libisospec++-doc_2.3.2-1_all.deb 2b0187b8d7ee92b831d8ed57a32c2302 347232 debug optional libisospec++2t64-dbgsym_2.3.2-1_amd64.deb 9a1a762cfac555d84fd579226ef5ed64 76996 libs optional libisospec++2t64_2.3.2-1_amd64.deb 7e08b497000905bbd25d9a2f08d21c2a 116740 python optional python3-isospec_2.3.2-1_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/isospec_2.3.1-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/isospec_2.3.2-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/isospec_2.3.1-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/isospec_2.3.2-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/isospec_2.3.1-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/isospec_2.3.1-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbd/unstable/amd64/isospec_2.3.1-2.diffoscope.html' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/amd64/isospec_2.3.1-2.diffoscope.txt.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdjson/unstable/amd64/isospec_2.3.1-2.diffoscope.json.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/isospec_2.3.1-2_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/isospec_2.3.1-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-11-06 20:24:50.485430464 +0000 +++ b2/build.log 2025-11-06 20:36:08.814274704 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 9 14:43:05 -12 2026 -I: pbuilder-time-stamp: 1796870585 +I: Current time: Fri Nov 7 10:24:53 +14 2025 +I: pbuilder-time-stamp: 1762460693 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying disable-pdf-refman-generation.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2328783/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 6 20:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='07c94e60452e4fae9f070c9301d898b0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2328783' - PS1='# ' - PS2='> ' + INVOCATION_ID=024c32cd1e424c3582594181291b96b0 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2662683 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/pbuilderrc_OFDh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b1 --logfile b1/build.log isospec_2.3.2-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/pbuilderrc_XoGN --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b2 --logfile b2/build.log isospec_2.3.2-1.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2328783/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -372,7 +404,7 @@ Get: 222 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2025.20250927-4 [23.6 MB] Get: 223 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2025.20250927-3 [27.7 MB] Get: 224 http://deb.debian.org/debian unstable/main amd64 texlive-plain-generic all 2025.20250927-3 [29.9 MB] -Fetched 353 MB in 8s (41.9 MB/s) +Fetched 353 MB in 58s (6074 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) @@ -1106,8 +1138,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Dec 10 02:45:22 UTC 2026. -Universal Time is now: Thu Dec 10 02:45:22 UTC 2026. +Local time is now: Thu Nov 6 20:31:34 UTC 2025. +Universal Time is now: Thu Nov 6 20:31:34 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... @@ -1313,7 +1345,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/isospec-2.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../isospec_2.3.2-1_source.changes +I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/isospec-2.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../isospec_2.3.2-1_source.changes dpkg-buildpackage: info: source package isospec dpkg-buildpackage: info: source version 2.3.2-1 dpkg-buildpackage: info: source distribution unstable @@ -1339,8 +1375,8 @@ Restoring man/CMakeLists.txt Removing patch header-file-inclusion.patch -Restoring Examples/C++/radiolabelling.cpp Restoring Examples/C++/water.cpp +Restoring Examples/C++/radiolabelling.cpp Removing patch library-version.patch Restoring CMakeLists.txt @@ -1398,7 +1434,7 @@ dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.3.2 -DISOSPEC_LIB_SOVERSION=2 - cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.3.2 -DISOSPEC_LIB_SOVERSION=2 .. + cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.3.2 -DISOSPEC_LIB_SOVERSION=2 .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info @@ -1455,11 +1491,12 @@ Library version: 2.3.2 Library soname: 2 --- Configuring done (1.3s) +-- Configuring done (3.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY @@ -1477,7 +1514,7 @@ dpkg-query: no packages found matching r-base-core # The C++ lib dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1490,15 +1527,15 @@ make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/isospec-2.3.2 /build/reproducible-path/isospec-2.3.2/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' -make -f src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make -f src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' +[ 25%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o +make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' +make -f src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build +cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/c++ -DIsoSpec___shared_EXPORTS -I/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ -I/build/reproducible-path/isospec-2.3.2/src/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -pedantic -fPIC -MD -MT src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp make[4]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' -[ 25%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -[ 50%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o +[ 50%] Building CXX object src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/c++ -I/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ -I/build/reproducible-path/isospec-2.3.2/src/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -pedantic -fPIC -MD -MT src/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp -cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/c++ -DIsoSpec___shared_EXPORTS -I/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ -I/build/reproducible-path/isospec-2.3.2/src/IsoSpec++ -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -pedantic -fPIC -MD -MT src/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -c /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp In file included from /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp:30: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp: In constructor ‘IsoSpec::Iso::Iso()’: /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:53:25: warning: allocation of insufficient size ‘0’ for type ‘int’ with size ‘4’ [-Walloc-size] @@ -1521,19 +1558,19 @@ /build/reproducible-path/isospec-2.3.2/src/IsoSpec++/isoSpec++.cpp:57:26: warning: allocation of insufficient size ‘0’ for type ‘IsoSpec::Marginal*’ with size ‘8’ [-Walloc-size] 57 | marginals(new Marginal*[0]) | ^ -[ 75%] Linking CXX static library libIsoSpec++.a +[ 75%] Linking CXX shared library libIsoSpec++.so +cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-shared.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/IsoSpec++-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libIsoSpec++.so.2 -o libIsoSpec++.so.2.3.2 "CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o" +cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_symlink_library libIsoSpec++.so.2.3.2 libIsoSpec++.so.2 libIsoSpec++.so +make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' +[ 75%] Built target IsoSpec++-shared +[100%] Linking CXX static library libIsoSpec++.a cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -P CMakeFiles/IsoSpec++-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-static.dir/link.txt --verbose=1 /usr/bin/ar qc libIsoSpec++.a "CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o" /usr/bin/ranlib libIsoSpec++.a make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' -[ 75%] Built target IsoSpec++-static -[100%] Linking CXX shared library libIsoSpec++.so -cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/isospec-2.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/IsoSpec++-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libIsoSpec++.so.2 -o libIsoSpec++.so.2.3.2 "CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o" -cd /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/src/IsoSpec++ && /usr/bin/cmake -E cmake_symlink_library libIsoSpec++.so.2.3.2 libIsoSpec++.so.2 libIsoSpec++.so -make[4]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' -[100%] Built target IsoSpec++-shared +[100%] Built target IsoSpec++-static make[3]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' @@ -1545,51 +1582,51 @@ * Building wheel... *** scikit-build-core 0.11.6 using CMake 3.31.6 (wheel) *** Configuring CMake... -loading initial cache file /tmp/tmpinaclyoi/build/CMakeInit.txt +loading initial cache file /tmp/tmp9a75qsap/build/CMakeInit.txt -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.3s) +-- Configuring done (0.2s) -- Generating done (0.0s) --- Build files have been written to: /tmp/tmpinaclyoi/build +-- Build files have been written to: /tmp/tmp9a75qsap/build *** Building project with Unix Makefiles... -gmake[2]: Entering directory '/tmp/tmpinaclyoi/build' +gmake[2]: Entering directory '/tmp/tmp9a75qsap/build' [ 50%] Building CXX object CMakeFiles/IsoSpecCppPy.dir/build/reproducible-path/isospec-2.3.2/src/IsoSpec++/unity-build.cpp.o [100%] Linking CXX shared library libIsoSpecCppPy.so [100%] Built target IsoSpecCppPy -gmake[2]: Leaving directory '/tmp/tmpinaclyoi/build' +gmake[2]: Leaving directory '/tmp/tmp9a75qsap/build' *** Installing project into wheel... -- Install configuration: "Release" --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/libIsoSpecCppPy.so --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++ --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/conf.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/marginalTrek++.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/btrd.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/platform.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/pod_vector.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/fixedEnvelopes.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/cwrapper.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/summator.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/element_tables.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/misc.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/fasta.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/isoMath.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/allocator.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/platform_incl.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/isoSpec++.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/operators.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/mman.h --- Installing: /tmp/tmpinaclyoi/wheel/platlib/IsoSpecPy/IsoSpec++/dirtyAllocator.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/libIsoSpecCppPy.so +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++ +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/dirtyAllocator.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/platform.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/platform_incl.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/fasta.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/conf.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/fixedEnvelopes.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/misc.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/allocator.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/summator.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/mman.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/isoMath.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/operators.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/pod_vector.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/cwrapper.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/isoSpec++.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/btrd.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/marginalTrek++.h +-- Installing: /tmp/tmp9a75qsap/wheel/platlib/IsoSpecPy/IsoSpec++/element_tables.h *** Making wheel... *** Created isospecpy-2.3.2-cp313-cp313-linux_x86_64.whl Successfully built isospecpy-2.3.2-cp313-cp313-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module # The Doxygen-based HTML format documentation dh_auto_build -O--buildsystem=cmake -- html_doc - cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" html_doc VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" html_doc VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc @@ -2364,15 +2401,7 @@ make[1]: Leaving directory '/build/reproducible-path/isospec-2.3.2' - dh_auto_test -O--buildsystem=pybuild - pybuild --test -i python{version} -p 3.13 -I: pybuild base:311: cd /build/reproducible-path/isospec-2.3.2/.pybuild/cpython3_3.13_isospec/build; python3.13 -m unittest discover -v - ----------------------------------------------------------------------- -Ran 0 tests in 0.000s - -NO TESTS RAN - rm -fr -- /tmp/dh-xdg-rundir-x6BTUS1z +dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -2386,7 +2415,7 @@ # The C++ lib dh_auto_install -O--buildsystem=cmake install -m0755 -d /build/reproducible-path/isospec-2.3.2/debian/tmp - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/isospec-2.3.2/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/isospec-2.3.2/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/isospec-2.3.2 -B/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2400,304 +2429,304 @@ -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec++/IsoSpec++Config.cmake -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libisospec++.pc -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/platform__incl_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_s.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderopen.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/menu.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_hd.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doxygen.css --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/conf_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/files.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderclosed.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/misc_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_fd.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fasta_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/operators_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classpod__vector-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/unity-build_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/python-build_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/cwrapper_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_ad.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/bc_sd.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/operators_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_bd.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/plusd.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/misc_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/closed.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dynsections.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doxygen.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/docd.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/splitbar.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/element__tables_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderclosedd.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doc.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_h.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/index.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_h.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dir_b34879a1d7d063b9f8968807d451b7a6.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/btrd_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderopend.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fasta_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions_vars.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/annotated.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespace_iso_spec.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/summator_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/platform_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespaces.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order-members.html --- Installing: 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Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/pod__vector_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/hierarchy.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions_func.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/mman_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classpod__vector.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/structws__match__res-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/open.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_hd.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/bc_s.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/plus.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/minus.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_a.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/cwrapper_8cpp_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_6.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_10.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_sel.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_4.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_4.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_7.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_13.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_e.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_11.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_d.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_f.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_e.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_a.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_c.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_8.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_b.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_5.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_4.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_3.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_9.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_9.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_d.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_a.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_d.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_6.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_0.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_b.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_c.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_a.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_0.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_6.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_c.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/close.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_1.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_10.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_2.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_b.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_f.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_b.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_5.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/search.css +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_8.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_7.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/search.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_3.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_1.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_6.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_10.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_seld.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_7.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_3.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_1.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_0.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_4.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_c.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_d.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_2.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_0.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_seld.svg -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_6.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_7.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_10.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_5.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/close.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_4.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_f.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_e.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_a.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_3.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_13.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_4.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_c.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_d.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_c.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_d.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_e.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_e.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/search.css -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_1.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_4.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_sel.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_3.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_f.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_b.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/namespaces_0.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_3.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_1.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_9.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_2.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_8.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_12.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_0.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_5.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_2.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_5.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_d.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_8.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_a.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_1.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_a.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_0.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_11.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_3.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_4.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/search.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_e.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_6.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_2.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_8.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_9.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/all_12.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/searchdata.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_7.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_5.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_2.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/variables_3.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/functions_0.js -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/classes_9.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/search/mag_d.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/sync_on.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/misc_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/btrd_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/structws__match__res-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/bc_sd.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_f.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/element__tables_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/pod__vector_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_s.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/unity-build_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/splitbard.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/plusd.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/allocator_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classpod__vector-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classes.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/menudata.js --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_b.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/mman_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespace_iso_spec.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/files.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/platform__incl_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/docd.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderopen.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_hd.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions_vars.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dir_b34879a1d7d063b9f8968807d451b7a6.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/sync_on.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/hierarchy.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespaces.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/python-build_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_h.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderclosed.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/cwrapper_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/minusd.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/cwrapper_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dynsections.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_sd.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_g.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doc.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_h.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderclosedd.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_a.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/annotated.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doxygen.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tabs.css --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/structws__match__res.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_fd.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespacemembers.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fasta_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/bc_s.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_bd.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/summator_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_b.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/element__tables_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/splitbard.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_hd.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/doxygen.css +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/mman_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/mman_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator-members.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8h_source.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_f.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/nav_g.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/functions_func.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/jquery.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fasta_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classpod__vector.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/folderopend.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/allocator_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/conf_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/structws__match__res.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/misc_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/platform_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/menu.js +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/index.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/minus.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/operators_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/tab_ad.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/sync_off.png --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespacemembers.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/plus.svg +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/splitbar.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/open.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing-members.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/minusd.svg --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/allocator_8cpp_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator-members.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/closed.png +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/operators_8cpp_source.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/namespacemembers_func.html --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/iso_math_8h_source.html +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/html/classes.html -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TSummator.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TableOrder.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SSummator.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_MarginalTrek.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_FixedEnvelope.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoGenerator.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Allocator.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LayeredMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_PrecalculatedMarginal.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_KeyHasher.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrderMarginalDescending.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ReverseOrder.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LoggingMarginal.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ProbAndConfPtr.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SSummator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Iso.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoOrderedGeneratorTemplate.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrder.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_MarginalTrek.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoLayeredGeneratorTemplate.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_OrderMarginalsBySizeDecresing.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/ws_match_res.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoStochasticGeneratorTemplate.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SingleAtomMarginal.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TableOrder.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_FixedEnvelope.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrderMarginalDescending.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_KeyHasher.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Marginal.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_DirtyAllocator.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfEqual.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/pod_vector.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LoggingMarginal.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Summator.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoLayeredGeneratorTemplate.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoThresholdGenerator.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_OrderMarginalsBySizeDecresing.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoOrderedGeneratorTemplate.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_Allocator.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_DirtyAllocator.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrderMarginal.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfOrder.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/ws_match_res.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_LayeredMarginal.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoThresholdGenerator.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_TSummator.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/pod_vector.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_IsoGenerator.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_SingleAtomMarginal.3 +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ConfEqual.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/unsafe_pod_vector.3 --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/man//man3/IsoSpec_ReverseOrder.3 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++ --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/radiolabelling.cpp -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/water.cpp +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/radiolabelling.cpp -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/C++/COMPILING -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/custom_elements.py +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/radiolabelling.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/binned_spectrum.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/fasta.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/water.py --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/custom_elements.py --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/Python/radiolabelling.py -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R/radiolabelling.R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R/water.R +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/share/doc/isospec/examples/R/radiolabelling.R -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2.3.2 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2 -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.a -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++ --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/conf.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/marginalTrek++.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/btrd.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/dirtyAllocator.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/platform.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/pod_vector.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/platform_incl.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/fasta.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/conf.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/fixedEnvelopes.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/cwrapper.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/summator.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/element_tables.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/misc.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/fasta.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoMath.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/allocator.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/platform_incl.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoSpec++.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/operators.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/summator.h -- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/mman.h --- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/dirtyAllocator.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoMath.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/operators.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/pod_vector.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/cwrapper.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/isoSpec++.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/btrd.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/marginalTrek++.h +-- Installing: /build/reproducible-path/isospec-2.3.2/debian/tmp/usr/include/IsoSpec++/element_tables.h make[2]: Leaving directory '/build/reproducible-path/isospec-2.3.2/obj-x86_64-linux-gnu' # The Python module dh_auto_install -O--buildsystem=pybuild @@ -2839,69 +2868,69 @@ man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LoggingMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 + mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 + chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 - mv debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 - chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] @@ -2922,7 +2951,7 @@ D: dh_python3 pydist:175: trying to find dependency for cffi (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:220: dependency: requirement already has hardcoded version -D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3:any', 'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3 (<< 3.14)', 'python3:any', 'python3 (>= 3.13~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+2t64/usr/share/lintian/overrides @@ -2937,55 +2966,55 @@ ln -s libIsoSpec\+\+.so.2.3.2 debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2 dh_strip_nondeterminism -O--buildsystem=pybuild Using 1762380009 as canonical time + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_sd.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_s.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_hd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_fd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_ad.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_sd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_bd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/closed.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbard.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator_template.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbar.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_h.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_hd.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator_template.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_on.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_h.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_sd.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_h.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_a.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_fd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_single_atom_marginal.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/open.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_s.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_a.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_on.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator_template.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_bd.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_b.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_sd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbard.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_f.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_g.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_hd.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_logging_marginal.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_ad.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_off.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png - Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbar.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/open.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png using File::StripNondeterminism::handlers::png + Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/closed.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/libisospec++-dev cd debian/libisospec++2t64 cd debian/python3-isospec cd debian/libisospec++-doc - chmod a-x usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian + chmod a-x usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_LoggingMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 chmod a-x usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+2t64/changelog usr/share/doc/libisospec\+\+2t64/changelog.Debian gzip -9nf usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian - gzip -9nf usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoOrderedGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoStochasticGeneratorTemplate.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_LoggingMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_SingleAtomMarginal.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 + gzip -9nf usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' cd '/build/reproducible-path/isospec-2.3.2' @@ -2995,23 +3024,23 @@ find debian/libisospec\+\+2t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libisospec\+\+2t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++2t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libisospec\+\+2t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++2t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+2t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libisospec\+\+2t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/man debian/libisospec\+\+-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libisospec\+\+2t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libisospec\+\+2t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libisospec\+\+2t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libisospec\+\+2t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libisospec\+\+2t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz -- debian/libisospec\+\+2t64/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.3.2 @@ -3067,11 +3096,6 @@ echo misc:Depends= >> debian/libisospec++-dev.substvars echo misc:Pre-Depends= >> debian/libisospec++-dev.substvars dpkg-gencontrol -plibisospec\+\+-dev -ldebian/changelog -Tdebian/libisospec\+\+-dev.substvars -cdebian/control -Pdebian/libisospec\+\+-dev - install -m0755 -d debian/libisospec\+\+2t64/DEBIAN - echo misc:Depends= >> debian/libisospec++2t64.substvars - echo misc:Pre-Depends= >> debian/libisospec++2t64.substvars - install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN - dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/.debhelper/libisospec\+\+2t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libisospec\+\+2t64-dbgsym -DDepends="libisospec++2t64 (= \${binary:Version})" -DDescription="debug symbols for libisospec++2t64" -DBuild-Ids=d9f311289d1532e55c3680ac28eab799e9a43b81 -DSection=debug -UReplaces -UBreaks install -m0755 -d debian/libisospec\+\+-doc/DEBIAN echo misc:Depends= >> debian/libisospec++-doc.substvars echo misc:Pre-Depends= >> debian/libisospec++-doc.substvars @@ -3080,11 +3104,16 @@ echo misc:Depends= >> debian/python3-isospec.substvars echo misc:Pre-Depends= >> debian/python3-isospec.substvars dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -cdebian/control -Pdebian/python3-isospec - chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/control + install -m0755 -d debian/libisospec\+\+2t64/DEBIAN + echo misc:Depends= >> debian/libisospec++2t64.substvars + echo misc:Pre-Depends= >> debian/libisospec++2t64.substvars + install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN + dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/.debhelper/libisospec\+\+2t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libisospec\+\+2t64-dbgsym -DDepends="libisospec++2t64 (= \${binary:Version})" -DDescription="debug symbols for libisospec++2t64" -DBuild-Ids=d9f311289d1532e55c3680ac28eab799e9a43b81 -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/control - chmod 0644 -- debian/python3-isospec/DEBIAN/control chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -cdebian/control -Pdebian/libisospec\+\+2t64 + chmod 0644 -- debian/python3-isospec/DEBIAN/control + chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/control chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/libisospec\+\+-dev/DEBIAN @@ -3097,8 +3126,8 @@ cd debian/libisospec++-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN - chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/md5sums + chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums cd debian/.debhelper/libisospec++2t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/md5sums @@ -3108,11 +3137,11 @@ dpkg-deb --root-owner-group --build debian/.debhelper/libisospec\+\+2t64/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-isospec .. dpkg-deb --root-owner-group --build debian/libisospec\+\+-doc .. -dpkg-deb: building package 'libisospec++-dev' in '../libisospec++-dev_2.3.2-1_amd64.deb'. -dpkg-deb: building package 'libisospec++2t64' in '../libisospec++2t64_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++2t64-dbgsym' in '../libisospec++2t64-dbgsym_2.3.2-1_amd64.deb'. -dpkg-deb: building package 'python3-isospec' in '../python3-isospec_2.3.2-1_amd64.deb'. +dpkg-deb: building package 'libisospec++2t64' in '../libisospec++2t64_2.3.2-1_amd64.deb'. +dpkg-deb: building package 'libisospec++-dev' in '../libisospec++-dev_2.3.2-1_amd64.deb'. dpkg-deb: building package 'libisospec++-doc' in '../libisospec++-doc_2.3.2-1_all.deb'. +dpkg-deb: building package 'python3-isospec' in '../python3-isospec_2.3.2-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../isospec_2.3.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../isospec_2.3.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3120,12 +3149,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2662683/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2328783 and its subdirectories -I: Current time: Wed Dec 9 14:47:50 -12 2026 -I: pbuilder-time-stamp: 1796870870 +I: removing directory /srv/workspace/pbuilder/2662683 and its subdirectories +I: Current time: Fri Nov 7 10:36:08 +14 2025 +I: pbuilder-time-stamp: 1762461368 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/isospec_2.3.2-1.diff: 90.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/isospec_2.3.2-1.diff.gz b2/build.log: 87.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 88.0% -- replaced with stdout Thu Nov 6 20:36:09 UTC 2025 I: diffoscope 307 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_isospec_unstable_amd64_1762461369 + touch /var/log/reproducible-builds/diffoscope_stamp_isospec_unstable_amd64_1762461369 + RESULT=0 + systemd-run '--description=diffoscope on isospec/2.3.2-1 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_20-72922 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO --run-session -c jenkins-reproducible-unstable-diffoscope-18be3f5e-d11b-4021-a3e4-b85770897349 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/dbd-tmp-Cfg3neE ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/isospec_2.3.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/isospec_2.3.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/isospec_2.3.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b1/isospec_2.3.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b2/isospec_2.3.2-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_20-72922.service; invocation ID: c4709ea746da4e639e0f102c8cc23250 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/isospec_2.3.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/isospec_2.3.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/isospec_2.3.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b1/isospec_2.3.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.25H844RO/b2/isospec_2.3.2-1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 4.209s) 1.725s 110 calls objdump 1.721s 57 calls diff 0.689s 457 calls readelf 0.028s 11 calls strings 0.025s 6 calls xz 0.007s 2 calls objcopy 0.006s 5 calls cmp 0.006s 5 calls cmp (external) 0.001s 16 calls cmp (internal) ## compare_files (cumulative) (total time: 14.390s) 2.520s 1 call abc.DotChangesFile 2.502s 1 call abc.DebFile 2.490s 2 calls abc.XzFile 2.443s 1 call abc.DebDataTarFile 2.392s 1 call abc.ElfFile 1.809s 5 calls diffoscope.comparators.elf.ElfCodeSection 0.210s 14 calls diffoscope.comparators.elf.ElfSection 0.022s 1 call abc.TarFile 0.003s 1 call abc.Md5sumsFile ## container_extract (total time: 0.041s) 0.025s 6 calls diffoscope.comparators.xz.XzContainer 0.011s 72 calls diffoscope.comparators.deb.DebTarContainer 0.003s 10 calls diffoscope.comparators.tar.TarContainer 0.002s 8 calls diffoscope.comparators.deb.DebContainer ## diff (total time: 0.002s) 0.002s 3 calls linediff ## has_same_content_as (total time: 0.008s) 0.006s 5 calls abc.DebFile 0.001s 1 call abc.DebDataTarFile 0.000s 4 calls abc.TextFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.ElfFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 14 calls diffoscope.comparators.elf.ElfSection 0.000s 5 calls diffoscope.comparators.elf.ElfCodeSection ## main (total time: 2.790s) 2.787s 2 calls outputs 0.002s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.014s) 0.013s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 0.051s) 0.021s 660 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile 0.007s 264 calls diffoscope.comparators.utils.archive.ArchiveMember 0.005s 270 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.277s) 0.277s 36 calls specialize Finished with result: success Main processes terminated with: code=exited, status=1/FAILURE Service runtime: 3.121s CPU time consumed: 4.032s Memory peak: 57.4M (swap: 0B) Thu Nov 6 20:36:13 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Thu Nov 6 20:36:13 UTC 2025 E: isospec failed to build reproducibly in unstable on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-11-06 20:36:13] INFO: Starting at 2025-11-06 20:36:13.671764 [2025-11-06 20:36:13] INFO: Generating the pages of 1 package(s) [2025-11-06 20:36:13] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/isospec didn't produce a buildlog, even though it has been built. [2025-11-06 20:36:13] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/isospec_2.3.2-1_arm64.buildinfo [2025-11-06 20:36:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/isospec_2.3.2-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/isospec_2.3.2-1.diff.gz is missing [2025-11-06 20:36:13] INFO: Finished at 2025-11-06 20:36:13.940153, took: 0:00:00.268392 Thu Nov 6 20:36:14 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/isospec.html Thu Nov 6 20:36:14 UTC 2025 I: Removing signed isospec_2.3.2-1_amd64.buildinfo.asc files: removed './b1/isospec_2.3.2-1_amd64.buildinfo.asc' removed './b2/isospec_2.3.2-1_amd64.buildinfo.asc' 1762461374 amd64 unstable isospec Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/isospec_2.3.2-1.rbuild.log: 87.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/isospec_2.3.2-1.rbuild.log.gz [2025-11-06 20:36:14] INFO: Starting at 2025-11-06 20:36:14.288840 [2025-11-06 20:36:14] INFO: Generating the pages of 1 package(s) [2025-11-06 20:36:14] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/isospec_2.3.2-1_arm64.buildinfo [2025-11-06 20:36:14] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/isospec_2.3.2-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/isospec_2.3.2-1.diff.gz is missing [2025-11-06 20:36:14] INFO: Finished at 2025-11-06 20:36:14.546679, took: 0:00:00.257842 All cleanup done. Thu Nov 6 20:36:14 UTC 2025 - total duration: 0h 16m 21s. Thu Nov 6 20:36:14 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-GZT48aP2, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 16min 22.026s CPU time consumed: 3.484s Memory peak: 45.6M (swap: 0B)