Running as unit: rb-build-amd64_21-43817.service ==================================================================================== Mon Jun 16 08:36:39 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_21) on jenkins, called using "ionos11-amd64 ionos5-amd64" as arguments. Mon Jun 16 08:36:39 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-BVnoFlWO" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Jun 16 08:36:39 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Mon Jun 16 08:36:39 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-QUec12' Mon Jun 16 08:36:40 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Mon Jun 16 08:36:40 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-nhdD76' ok, let's check if lambda-align is building anywhere yet… ok, lambda-align is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of lambda-align in experimental on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos5-amd64.debian.net. ============================================================================= Mon Jun 16 08:36:57 UTC 2025 I: starting to build lambda-align/experimental/amd64 on jenkins on '2025-06-16 08:36' Mon Jun 16 08:36:57 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_21/43817/console.log 1750063017 amd64 experimental lambda-align Mon Jun 16 08:36:57 UTC 2025 I: Downloading source for experimental/lambda-align=1.0.3-7 --2025-06-16 08:36:57-- http://cdn-fastly.deb.debian.org/debian/pool/main/l/lambda-align/lambda-align_1.0.3-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2114 (2.1K) [text/prs.lines.tag] Saving to: ‘lambda-align_1.0.3-7.dsc’ 0K .. 100% 249M=0s 2025-06-16 08:36:57 (249 MB/s) - ‘lambda-align_1.0.3-7.dsc’ saved [2114/2114] --2025-06-16 08:36:57-- http://cdn-fastly.deb.debian.org/debian/pool/main/l/lambda-align/lambda-align_1.0.3-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2114 (2.1K) [text/prs.lines.tag] Saving to: ‘lambda-align_1.0.3-7.dsc’ 0K .. 100% 249M=0s 2025-06-16 08:36:57 (249 MB/s) - ‘lambda-align_1.0.3-7.dsc’ saved [2114/2114] Mon Jun 16 08:36:57 UTC 2025 I: lambda-align_1.0.3-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lambda-align Binary: lambda-align Architecture: any Version: 1.0.3-7 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://seqan.github.io/lambda Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/lambda-align Vcs-Git: https://salsa.debian.org/med-team/lambda-align.git Testsuite: autopkgtest Testsuite-Triggers: cmake, coreutils, diffutils, gzip, openssl Build-Depends: debhelper (>= 12~), libseqan2-dev (= 2.5.0~rc3+dfsg-1), cmake, zlib1g-dev, libbz2-dev, openssl Package-List: lambda-align deb science optional arch=any Checksums-Sha1: abf40a7204b2c249152a7e4275c6adb3628fe8cf 322730 lambda-align_1.0.3.orig.tar.gz 1f117086fb79234766d5c0248a8caf9d4b208686 12556 lambda-align_1.0.3-7.debian.tar.xz Checksums-Sha256: 324f90dbc095c56792a77a002e64a98465a4853f74a141a1182e7a6f540545a2 322730 lambda-align_1.0.3.orig.tar.gz 72be7800caa6eed49613d57f24bdc83d94b78b6b697e87ee3429d3b536aea076 12556 lambda-align_1.0.3-7.debian.tar.xz Files: b18d7c968b8c52851c8037dfc8066bce 322730 lambda-align_1.0.3.orig.tar.gz ef14ca5311cb433e7ed8f0644c518b16 12556 lambda-align_1.0.3-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdG6WEACgkQPCZ2P2xn 5uKivQ//bnBnY7TnHhnGqVxMcM9eiYX3M6rR5EXY7E9DdAlTtHtVPzlmhT91aN/7 JnWpvPr5/ddqBbIiMlEJ4qX+dHLhbfwaRGkIW4IK1y1iMLn40j9ocBSWDGba4BXd Yy2QoHfQ7X5TLGusUuyg6Z/XbQa8zA0IY8UMqfnRc0+wp8H1Ux1DMxejzDJvTeWw Df4JD3FIOOdP9R+zS9mSHVFi+Ok6lRIlWshxEcmFV3cZtgd6S9U9LUyTS6BEEHmA 2Y8/nkM9K8kbgLyg3/JQdwJwE8PNH0E1PUoP4dPXv4+ak2N56kYctgwGXMEGFMDt 6eh7yHepx2gqMRH2eFUhoTKNBjXxvFNQVBP7GdiSM1ZKtVaELDwAZYg7yMst4qGa LJ6aQo4kDPEWyDwCYtsVMe7G1nwqlUgFZQHRPSmgJDWP+k3KozrOnpERKImXlfi5 2neSX00UKTaZRD78gn1AzF79XfJXaWtA55l/Nqb7NY5oP5DCyPlp+M+KVBczumV7 A20Sn4LnI2WuJxzVsf3+NQUN4OzlfgwQJNK48zQXVKydF+6OcWzcFgeuX6TlssMd XARdVoBgr9Uva+YUZScRzX6SPLK3sJrSsuhlUjFOWrrXI7b8O432ABQXbVMxPws8 CPoYUO3ZmUBdUOgYx5Ti/tXGY/3W8XgcfhB2dDSuJTmmjljkm2w= =aWmN -----END PGP SIGNATURE----- Mon Jun 16 08:36:57 UTC 2025 I: Checking whether the package is not for us Mon Jun 16 08:36:57 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon Jun 16 08:36:57 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon Jun 16 08:36:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Mon Jun 16 08:36:57 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-20QPtd' ==================================================================================== Mon Jun 16 08:36:58 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 lambda-align experimental /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw 1.0.3-7" as arguments. Mon Jun 16 08:36:58 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-ogs8JIcH" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Jun 16 08:36:58 UTC 2025 I: Downloading source for experimental/lambda-align=1.0.3-7 Reading package lists... NOTICE: 'lambda-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align.git Please use: git clone https://salsa.debian.org/med-team/lambda-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 337 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (dsc) [2114 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (tar) [323 kB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (diff) [12.6 kB] Fetched 337 kB in 0s (8717 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'lambda-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align.git Please use: git clone https://salsa.debian.org/med-team/lambda-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 337 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (dsc) [2114 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (tar) [323 kB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (diff) [12.6 kB] Fetched 337 kB in 0s (8717 kB/s) Download complete and in download only mode ============================================================================= Building lambda-align in experimental on amd64 on ionos11-amd64 now. Date: Mon Jun 16 08:36:59 UTC 2025 Date UTC: Mon Jun 16 08:36:59 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 15 20:36:59 -12 2025 I: pbuilder-time-stamp: 1750063019 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align_1.0.3-7.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-7.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0003-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2155535/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='cb5bc5d670ce4abc9ed336930f38a38b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2155535' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/pbuilderrc_c6In --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2155535/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev (= 2.5.0~rc3+dfsg-1), cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 33.8 MB of archives. After unpacking 118 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 35.1 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-3 [349 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3 [24.7 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-1 [391 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 61 http://deb.debian.org/debian experimental/main amd64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.0-2 [1490 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 35.1 MB in 6s (5918 kB/s) Preconfiguring 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Setting up cmake (3.31.6-2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.5.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (1.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o [ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/include/seqan/basic/debug_test_system.h:150, from /usr/include/seqan/basic/basic_debug.h:52, from /usr/include/seqan/basic.h:49, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:22: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 79 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/reproducible-path/lambda-align-1.0.3/src/output.hpp:25, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_toText': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append.isra' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'append.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/index/pipe_merger3.h:127:17, inlined from 'operator++' at /usr/include/seqan/index/index_skew3.h:329:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_counter.h:90:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:341:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' cd build/tests && ctest --parallel 40 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa Start 2: test_mkindex_blastn_fm Start 3: test_mkindex_blastp_sa Start 4: test_mkindex_blastp_fm Start 5: test_mkindex_blastx_sa Start 6: test_mkindex_blastx_fm Start 7: test_mkindex_tblastn_sa Start 8: test_mkindex_tblastn_fm Start 9: test_mkindex_tblastx_sa Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 Start 13: test_search_blastn_sa_m9 Start 14: test_search_blastn_sa_sam Start 15: test_search_blastn_sa_bam Start 16: test_search_blastn_sa_m9.gz Start 17: test_search_blastn_sa_sam.bz2 Start 18: test_search_blastn_fm_m0 Start 19: test_search_blastn_fm_m8 Start 20: test_search_blastn_fm_m9 Start 21: test_search_blastn_fm_sam Start 22: test_search_blastn_fm_bam Start 23: test_search_blastn_fm_m9.gz Start 24: test_search_blastn_fm_sam.bz2 Start 25: test_search_blastp_sa_m0 Start 26: test_search_blastp_sa_m8 Start 27: test_search_blastp_sa_m9 Start 28: test_search_blastp_sa_sam Start 29: test_search_blastp_sa_bam Start 30: test_search_blastp_sa_m9.gz Start 31: test_search_blastp_sa_sam.bz2 Start 32: test_search_blastp_fm_m0 Start 33: test_search_blastp_fm_m8 Start 34: test_search_blastp_fm_m9 Start 35: test_search_blastp_fm_sam Start 36: test_search_blastp_fm_bam Start 37: test_search_blastp_fm_m9.gz Start 38: test_search_blastp_fm_sam.bz2 Start 39: test_search_blastx_sa_m0 Start 40: test_search_blastx_sa_m8 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.59 sec Start 41: test_search_blastx_sa_m9 2/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.72 sec Start 42: test_search_blastx_sa_sam 3/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.80 sec Start 43: test_search_blastx_sa_bam 4/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.86 sec Start 44: test_search_blastx_sa_m9.gz 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 1.33 sec Start 45: test_search_blastx_sa_sam.bz2 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 1.47 sec Start 46: test_search_blastx_fm_m0 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.53 sec Start 47: test_search_blastx_fm_m8 8/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.70 sec Start 48: test_search_blastx_fm_m9 9/80 Test #32: test_search_blastp_fm_m0 ......... Passed 1.69 sec Start 49: test_search_blastx_fm_sam 10/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.75 sec Start 50: test_search_blastx_fm_bam 11/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.70 sec Start 51: test_search_blastx_fm_m9.gz 12/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.84 sec 13/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.72 sec Start 52: test_search_blastx_fm_sam.bz2 Start 53: test_search_tblastn_sa_m0 14/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.80 sec Start 54: test_search_tblastn_sa_m8 15/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.80 sec Start 55: test_search_tblastn_sa_m9 16/80 Test #33: test_search_blastp_fm_m8 ......... Passed 1.78 sec Start 56: test_search_tblastn_sa_sam 17/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.83 sec 18/80 Test #35: test_search_blastp_fm_sam ........ Passed 1.78 sec Start 57: test_search_tblastn_sa_bam Start 58: test_search_tblastn_sa_m9.gz 19/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.87 sec Start 59: test_search_tblastn_sa_sam.bz2 20/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.84 sec Start 60: test_search_tblastn_fm_m0 21/80 Test #36: test_search_blastp_fm_bam ........ Passed 1.89 sec Start 61: test_search_tblastn_fm_m8 22/80 Test #10: test_mkindex_tblastx_fm .......... Passed 2.05 sec Start 62: test_search_tblastn_fm_m9 23/80 Test #25: test_search_blastp_sa_m0 ......... Passed 2.12 sec Start 63: test_search_tblastn_fm_sam 24/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 2.22 sec Start 64: test_search_tblastn_fm_bam 25/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.30 sec Start 65: test_search_tblastn_fm_m9.gz 26/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.49 sec Start 66: test_search_tblastn_fm_sam.bz2 27/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.04 sec Start 67: test_search_tblastx_sa_m0 28/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.01 sec Start 68: test_search_tblastx_sa_m8 29/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.58 sec 30/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.19 sec Start 69: test_search_tblastx_sa_m9 Start 70: test_search_tblastx_sa_sam 31/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.23 sec 32/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 2.01 sec Start 71: test_search_tblastx_sa_bam Start 72: test_search_tblastx_sa_m9.gz 33/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 2.23 sec Start 73: test_search_tblastx_sa_sam.bz2 34/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.31 sec Start 74: test_search_tblastx_fm_m0 35/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.29 sec Start 75: test_search_tblastx_fm_m8 36/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.33 sec Start 76: test_search_tblastx_fm_m9 37/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.33 sec Start 77: test_search_tblastx_fm_sam 38/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.47 sec Start 78: test_search_tblastx_fm_bam 39/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.32 sec Start 79: test_search_tblastx_fm_m9.gz 40/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.60 sec Start 80: test_search_tblastx_fm_sam.bz2 41/80 Test #40: test_search_blastx_sa_m8 ......... Passed 4.77 sec 42/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.40 sec 43/80 Test #14: test_search_blastn_sa_sam ........ Passed 5.38 sec 44/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 3.54 sec 45/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 4.57 sec 46/80 Test #22: test_search_blastn_fm_bam ........ Passed 5.49 sec 47/80 Test #12: test_search_blastn_sa_m8 ......... Passed 5.53 sec 48/80 Test #15: test_search_blastn_sa_bam ........ Passed 5.59 sec 49/80 Test #20: test_search_blastn_fm_m9 ......... Passed 5.58 sec 50/80 Test #41: test_search_blastx_sa_m9 ......... Passed 5.02 sec 51/80 Test #42: test_search_blastx_sa_sam ........ Passed 4.89 sec 52/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 5.57 sec 53/80 Test #19: test_search_blastn_fm_m8 ......... Passed 6.02 sec 54/80 Test #11: test_search_blastn_sa_m0 ......... Passed 6.12 sec 55/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 6.11 sec 56/80 Test #13: test_search_blastn_sa_m9 ......... Passed 6.13 sec 57/80 Test #21: test_search_blastn_fm_sam ........ Passed 6.10 sec 58/80 Test #39: test_search_blastx_sa_m0 ......... Passed 6.00 sec 59/80 Test #43: test_search_blastx_sa_bam ........ Passed 5.34 sec 60/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 4.29 sec 61/80 Test #18: test_search_blastn_fm_m0 ......... Passed 6.13 sec 62/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.21 sec 63/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 4.91 sec 64/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 2.31 sec 65/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 6.40 sec 66/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 6.66 sec 67/80 Test #71: test_search_tblastx_sa_bam ....... Passed 4.72 sec 68/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 4.55 sec 69/80 Test #77: test_search_tblastx_fm_sam ....... Passed 4.56 sec 70/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 4.77 sec 71/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.55 sec 72/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 4.59 sec 73/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 5.12 sec 74/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 5.25 sec 75/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 5.28 sec 76/80 Test #70: test_search_tblastx_sa_sam ....... Passed 5.52 sec 77/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 5.58 sec 78/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 6.00 sec 79/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 6.18 sec 80/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 7.49 sec 100% tests passed, 0 tests failed out of 80 Total Test time (real) = 11.60 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build cd build && make -j40 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 50%] Built target lambda_indexer [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-7_amd64.buildinfo dpkg-genchanges --build=binary -O../lambda-align_1.0.3-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2155535 and its subdirectories I: Current time: Sun Jun 15 20:41:09 -12 2025 I: pbuilder-time-stamp: 1750063269 Mon Jun 16 08:41:09 UTC 2025 I: Signing ./b1/lambda-align_1.0.3-7_amd64.buildinfo as lambda-align_1.0.3-7_amd64.buildinfo.asc Mon Jun 16 08:41:10 UTC 2025 I: Signed ./b1/lambda-align_1.0.3-7_amd64.buildinfo as ./b1/lambda-align_1.0.3-7_amd64.buildinfo.asc Mon Jun 16 08:41:10 UTC 2025 - build #1 for lambda-align/experimental/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Mon Jun 16 08:41:10 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ogs8JIcH, removing. /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jun 16 08:41 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jun 16 08:36 b2 -rw-r--r-- 1 jenkins jenkins 2114 Nov 27 2024 lambda-align_1.0.3-7.dsc -rw------- 1 jenkins jenkins 3270 Jun 16 08:36 rbuildlog.Kn5cxj8 /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b1: total 2044 -rw-r--r-- 1 jenkins jenkins 544721 Jun 16 08:41 build.log -rw-r--r-- 1 jenkins jenkins 12556 Jun 16 08:41 lambda-align_1.0.3-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2114 Jun 16 08:41 lambda-align_1.0.3-7.dsc -rw-r--r-- 1 jenkins jenkins 5731 Jun 16 08:41 lambda-align_1.0.3-7_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6613 Jun 16 08:41 lambda-align_1.0.3-7_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1352 Jun 16 08:41 lambda-align_1.0.3-7_amd64.changes -rw-r--r-- 1 jenkins jenkins 1502232 Jun 16 08:41 lambda-align_1.0.3-7_amd64.deb -rw-r--r-- 1 jenkins jenkins 1516 Jun 16 08:41 lambda-align_1.0.3-7_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b2: total 0 Mon Jun 16 08:41:10 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 15 20:36:59 -12 2025 I: pbuilder-time-stamp: 1750063019 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align_1.0.3-7.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-7.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0003-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2155535/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='cb5bc5d670ce4abc9ed336930f38a38b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2155535' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/pbuilderrc_c6In --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2155535/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev (= 2.5.0~rc3+dfsg-1), cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 33.8 MB of archives. After unpacking 118 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 35.1 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-3 [349 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3 [24.7 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-1 [391 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 61 http://deb.debian.org/debian experimental/main amd64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.0-2 [1490 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 35.1 MB in 6s (5918 kB/s) Preconfiguring 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Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-8_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-8_amd64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package sensible-utils. 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Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-8) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-8) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.5.0-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libarchive13t64:amd64 (3.7.4-3) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:amd64 (8.14.1-1) ... Setting up debhelper (13.24.2) ... Setting up cmake (3.31.6-2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.5.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (1.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o [ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/include/seqan/basic/debug_test_system.h:150, from /usr/include/seqan/basic/basic_debug.h:52, from /usr/include/seqan/basic.h:49, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:22: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 79 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/reproducible-path/lambda-align-1.0.3/src/output.hpp:25, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_toText': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append.isra' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'append.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/index/pipe_merger3.h:127:17, inlined from 'operator++' at /usr/include/seqan/index/index_skew3.h:329:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_counter.h:90:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:341:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' cd build/tests && ctest --parallel 40 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa Start 2: test_mkindex_blastn_fm Start 3: test_mkindex_blastp_sa Start 4: test_mkindex_blastp_fm Start 5: test_mkindex_blastx_sa Start 6: test_mkindex_blastx_fm Start 7: test_mkindex_tblastn_sa Start 8: test_mkindex_tblastn_fm Start 9: test_mkindex_tblastx_sa Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 Start 13: test_search_blastn_sa_m9 Start 14: test_search_blastn_sa_sam Start 15: test_search_blastn_sa_bam Start 16: test_search_blastn_sa_m9.gz Start 17: test_search_blastn_sa_sam.bz2 Start 18: test_search_blastn_fm_m0 Start 19: test_search_blastn_fm_m8 Start 20: test_search_blastn_fm_m9 Start 21: test_search_blastn_fm_sam Start 22: test_search_blastn_fm_bam Start 23: test_search_blastn_fm_m9.gz Start 24: test_search_blastn_fm_sam.bz2 Start 25: test_search_blastp_sa_m0 Start 26: test_search_blastp_sa_m8 Start 27: test_search_blastp_sa_m9 Start 28: test_search_blastp_sa_sam Start 29: test_search_blastp_sa_bam Start 30: test_search_blastp_sa_m9.gz Start 31: test_search_blastp_sa_sam.bz2 Start 32: test_search_blastp_fm_m0 Start 33: test_search_blastp_fm_m8 Start 34: test_search_blastp_fm_m9 Start 35: test_search_blastp_fm_sam Start 36: test_search_blastp_fm_bam Start 37: test_search_blastp_fm_m9.gz Start 38: test_search_blastp_fm_sam.bz2 Start 39: test_search_blastx_sa_m0 Start 40: test_search_blastx_sa_m8 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.59 sec Start 41: test_search_blastx_sa_m9 2/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.72 sec Start 42: test_search_blastx_sa_sam 3/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.80 sec Start 43: test_search_blastx_sa_bam 4/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.86 sec Start 44: test_search_blastx_sa_m9.gz 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 1.33 sec Start 45: test_search_blastx_sa_sam.bz2 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 1.47 sec Start 46: test_search_blastx_fm_m0 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.53 sec Start 47: test_search_blastx_fm_m8 8/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.70 sec Start 48: test_search_blastx_fm_m9 9/80 Test #32: test_search_blastp_fm_m0 ......... Passed 1.69 sec Start 49: test_search_blastx_fm_sam 10/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.75 sec Start 50: test_search_blastx_fm_bam 11/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.70 sec Start 51: test_search_blastx_fm_m9.gz 12/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.84 sec 13/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.72 sec Start 52: test_search_blastx_fm_sam.bz2 Start 53: test_search_tblastn_sa_m0 14/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.80 sec Start 54: test_search_tblastn_sa_m8 15/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.80 sec Start 55: test_search_tblastn_sa_m9 16/80 Test #33: test_search_blastp_fm_m8 ......... Passed 1.78 sec Start 56: test_search_tblastn_sa_sam 17/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.83 sec 18/80 Test #35: test_search_blastp_fm_sam ........ Passed 1.78 sec Start 57: test_search_tblastn_sa_bam Start 58: test_search_tblastn_sa_m9.gz 19/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.87 sec Start 59: test_search_tblastn_sa_sam.bz2 20/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.84 sec Start 60: test_search_tblastn_fm_m0 21/80 Test #36: test_search_blastp_fm_bam ........ Passed 1.89 sec Start 61: test_search_tblastn_fm_m8 22/80 Test #10: test_mkindex_tblastx_fm .......... Passed 2.05 sec Start 62: test_search_tblastn_fm_m9 23/80 Test #25: test_search_blastp_sa_m0 ......... Passed 2.12 sec Start 63: test_search_tblastn_fm_sam 24/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 2.22 sec Start 64: test_search_tblastn_fm_bam 25/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.30 sec Start 65: test_search_tblastn_fm_m9.gz 26/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.49 sec Start 66: test_search_tblastn_fm_sam.bz2 27/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.04 sec Start 67: test_search_tblastx_sa_m0 28/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.01 sec Start 68: test_search_tblastx_sa_m8 29/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.58 sec 30/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.19 sec Start 69: test_search_tblastx_sa_m9 Start 70: test_search_tblastx_sa_sam 31/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.23 sec 32/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 2.01 sec Start 71: test_search_tblastx_sa_bam Start 72: test_search_tblastx_sa_m9.gz 33/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 2.23 sec Start 73: test_search_tblastx_sa_sam.bz2 34/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.31 sec Start 74: test_search_tblastx_fm_m0 35/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.29 sec Start 75: test_search_tblastx_fm_m8 36/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.33 sec Start 76: test_search_tblastx_fm_m9 37/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.33 sec Start 77: test_search_tblastx_fm_sam 38/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.47 sec Start 78: test_search_tblastx_fm_bam 39/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.32 sec Start 79: test_search_tblastx_fm_m9.gz 40/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.60 sec Start 80: test_search_tblastx_fm_sam.bz2 41/80 Test #40: test_search_blastx_sa_m8 ......... Passed 4.77 sec 42/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.40 sec 43/80 Test #14: test_search_blastn_sa_sam ........ Passed 5.38 sec 44/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 3.54 sec 45/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 4.57 sec 46/80 Test #22: test_search_blastn_fm_bam ........ Passed 5.49 sec 47/80 Test #12: test_search_blastn_sa_m8 ......... Passed 5.53 sec 48/80 Test #15: test_search_blastn_sa_bam ........ Passed 5.59 sec 49/80 Test #20: test_search_blastn_fm_m9 ......... Passed 5.58 sec 50/80 Test #41: test_search_blastx_sa_m9 ......... Passed 5.02 sec 51/80 Test #42: test_search_blastx_sa_sam ........ Passed 4.89 sec 52/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 5.57 sec 53/80 Test #19: test_search_blastn_fm_m8 ......... Passed 6.02 sec 54/80 Test #11: test_search_blastn_sa_m0 ......... Passed 6.12 sec 55/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 6.11 sec 56/80 Test #13: test_search_blastn_sa_m9 ......... Passed 6.13 sec 57/80 Test #21: test_search_blastn_fm_sam ........ Passed 6.10 sec 58/80 Test #39: test_search_blastx_sa_m0 ......... Passed 6.00 sec 59/80 Test #43: test_search_blastx_sa_bam ........ Passed 5.34 sec 60/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 4.29 sec 61/80 Test #18: test_search_blastn_fm_m0 ......... Passed 6.13 sec 62/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.21 sec 63/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 4.91 sec 64/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 2.31 sec 65/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 6.40 sec 66/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 6.66 sec 67/80 Test #71: test_search_tblastx_sa_bam ....... Passed 4.72 sec 68/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 4.55 sec 69/80 Test #77: test_search_tblastx_fm_sam ....... Passed 4.56 sec 70/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 4.77 sec 71/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.55 sec 72/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 4.59 sec 73/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 5.12 sec 74/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 5.25 sec 75/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 5.28 sec 76/80 Test #70: test_search_tblastx_sa_sam ....... Passed 5.52 sec 77/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 5.58 sec 78/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 6.00 sec 79/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 6.18 sec 80/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 7.49 sec 100% tests passed, 0 tests failed out of 80 Total Test time (real) = 11.60 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build cd build && make -j40 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 50%] Built target lambda_indexer [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-7_amd64.buildinfo dpkg-genchanges --build=binary -O../lambda-align_1.0.3-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2155535 and its subdirectories I: Current time: Sun Jun 15 20:41:09 -12 2025 I: pbuilder-time-stamp: 1750063269 Mon Jun 16 08:41:10 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Mon Jun 16 08:41:10 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Mon Jun 16 08:41:10 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Mon Jun 16 08:41:10 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-2A0WuI' ==================================================================================== Sun Jul 19 15:04:11 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "2 lambda-align experimental /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw 1.0.3-7" as arguments. Sun Jul 19 15:04:11 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-EreaLIjb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Jul 19 15:04:11 UTC 2026 I: Downloading source for experimental/lambda-align=1.0.3-7 Reading package lists... NOTICE: 'lambda-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align.git Please use: git clone https://salsa.debian.org/med-team/lambda-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 337 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (dsc) [2114 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (tar) [323 kB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (diff) [12.6 kB] Fetched 337 kB in 0s (3514 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'lambda-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align.git Please use: git clone https://salsa.debian.org/med-team/lambda-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 337 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (dsc) [2114 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (tar) [323 kB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (diff) [12.6 kB] Fetched 337 kB in 0s (3514 kB/s) Download complete and in download only mode ============================================================================= Re-Building lambda-align in experimental on amd64 on ionos5-amd64 now. Date: Sun Jul 19 15:04:11 UTC 2026 Date UTC: Sun Jul 19 15:04:11 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/pbuilderrc_HyB4 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' lambda-align = debian-installer -o lambda-align = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' lambda-align = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/pbuilderrc_HyB4 --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b2 --logfile b2/build.log lambda-align_1.0.3-7.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Jul 20 05:04:12 +14 2026 I: pbuilder-time-stamp: 1784473452 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align_1.0.3-7.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-7.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0003-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jul 19 15:04 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=experimental EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=ee5f9aa2120c468dabed34ccabb60d9a LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1380872 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/pbuilderrc_HyB4 --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b2 --logfile b2/build.log lambda-align_1.0.3-7.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.27+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.27-1~bpo12+1 (2025-05-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev (= 2.5.0~rc3+dfsg-1), cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 33.8 MB of archives. After unpacking 118 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 35.1 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-3 [349 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3 [24.7 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-1 [391 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 61 http://deb.debian.org/debian experimental/main amd64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.0-2 [1490 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 35.1 MB in 7s (5228 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-8_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-8_amd64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.6-2_all.deb ... Unpacking cmake-data (3.31.6-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../18-libxml2_2.12.7+dfsg+really2.9.14-1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../19-libarchive13t64_3.7.4-3_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../21-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../22-libcom-err2_1.47.2-3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../23-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../24-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../25-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../26-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../27-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../28-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../29-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../30-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../31-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../32-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../33-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../34-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../35-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../36-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../37-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../38-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../39-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../40-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../41-libcurl4t64_8.14.1-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.14.1-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../42-libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../43-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. 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Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../51-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../52-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../53-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../54-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../55-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../56-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../57-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../58-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../59-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../60-libseqan2-dev_2.5.0~rc3+dfsg-1_all.deb ... Unpacking libseqan2-dev (2.5.0~rc3+dfsg-1) ... Selecting previously unselected package openssl. Preparing to unpack .../61-openssl_3.5.0-2_amd64.deb ... Unpacking openssl (3.5.0-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../62-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:amd64 (1.47.2-3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libseqan2-dev (2.5.0~rc3+dfsg-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-8) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-8) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.5.0-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libarchive13t64:amd64 (3.7.4-3) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:amd64 (8.14.1-1) ... Setting up debhelper (13.24.2) ... Setting up cmake (3.31.6-2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for experimental I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.5.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (5.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake 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'/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 79 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/include/seqan/basic/debug_test_system.h:150, from /usr/include/seqan/basic/basic_debug.h:52, from /usr/include/seqan/basic.h:49, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:22: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/reproducible-path/lambda-align-1.0.3/src/output.hpp:25, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_toText': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append.isra' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'append.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/index/pipe_merger3.h:127:17, inlined from 'operator++' at /usr/include/seqan/index/index_skew3.h:329:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_counter.h:90:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:341:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' cd build/tests && ctest --parallel 42 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa Start 2: test_mkindex_blastn_fm Start 3: test_mkindex_blastp_sa Start 4: test_mkindex_blastp_fm Start 5: test_mkindex_blastx_sa Start 6: test_mkindex_blastx_fm Start 7: test_mkindex_tblastn_sa Start 8: test_mkindex_tblastn_fm Start 9: test_mkindex_tblastx_sa Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 Start 13: test_search_blastn_sa_m9 Start 14: test_search_blastn_sa_sam Start 15: test_search_blastn_sa_bam Start 16: test_search_blastn_sa_m9.gz Start 17: test_search_blastn_sa_sam.bz2 Start 18: test_search_blastn_fm_m0 Start 19: test_search_blastn_fm_m8 Start 20: test_search_blastn_fm_m9 Start 21: test_search_blastn_fm_sam Start 22: test_search_blastn_fm_bam Start 23: test_search_blastn_fm_m9.gz Start 24: test_search_blastn_fm_sam.bz2 Start 25: test_search_blastp_sa_m0 Start 26: test_search_blastp_sa_m8 Start 27: test_search_blastp_sa_m9 Start 28: test_search_blastp_sa_sam Start 29: test_search_blastp_sa_bam Start 30: test_search_blastp_sa_m9.gz Start 31: test_search_blastp_sa_sam.bz2 Start 32: test_search_blastp_fm_m0 Start 33: test_search_blastp_fm_m8 Start 34: test_search_blastp_fm_m9 Start 35: test_search_blastp_fm_sam Start 36: test_search_blastp_fm_bam Start 37: test_search_blastp_fm_m9.gz Start 38: test_search_blastp_fm_sam.bz2 Start 39: test_search_blastx_sa_m0 Start 40: test_search_blastx_sa_m8 Start 41: test_search_blastx_sa_m9 Start 42: test_search_blastx_sa_sam 1/80 Test #6: test_mkindex_blastx_fm ........... Passed 1.97 sec Start 43: test_search_blastx_sa_bam 2/80 Test #3: test_mkindex_blastp_sa ........... Passed 1.98 sec Start 44: test_search_blastx_sa_m9.gz 3/80 Test #5: test_mkindex_blastx_sa ........... Passed 2.02 sec Start 45: test_search_blastx_sa_sam.bz2 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 2.86 sec Start 46: test_search_blastx_fm_m0 5/80 Test #2: test_mkindex_blastn_fm ........... Passed 3.12 sec Start 47: test_search_blastx_fm_m8 6/80 Test #1: test_mkindex_blastn_sa ........... Passed 3.16 sec Start 48: test_search_blastx_fm_m9 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 3.15 sec Start 49: test_search_blastx_fm_sam 8/80 Test #7: test_mkindex_tblastn_sa .......... Passed 3.19 sec Start 50: test_search_blastx_fm_bam 9/80 Test #10: test_mkindex_tblastx_fm .......... Passed 3.23 sec Start 51: test_search_blastx_fm_m9.gz 10/80 Test #8: test_mkindex_tblastn_fm .......... Passed 3.25 sec Start 52: test_search_blastx_fm_sam.bz2 11/80 Test #33: test_search_blastp_fm_m8 ......... Passed 3.44 sec Start 53: test_search_tblastn_sa_m0 12/80 Test #34: test_search_blastp_fm_m9 ......... Passed 3.51 sec Start 54: test_search_tblastn_sa_m8 13/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 3.54 sec Start 55: test_search_tblastn_sa_m9 14/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 3.54 sec Start 56: test_search_tblastn_sa_sam 15/80 Test #36: test_search_blastp_fm_bam ........ Passed 3.55 sec Start 57: test_search_tblastn_sa_bam 16/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 3.58 sec Start 58: test_search_tblastn_sa_m9.gz 17/80 Test #26: test_search_blastp_sa_m8 ......... Passed 3.76 sec Start 59: test_search_tblastn_sa_sam.bz2 18/80 Test #32: test_search_blastp_fm_m0 ......... Passed 3.77 sec Start 60: test_search_tblastn_fm_m0 19/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 3.82 sec Start 61: test_search_tblastn_fm_m8 20/80 Test #28: test_search_blastp_sa_sam ........ Passed 3.97 sec Start 62: test_search_tblastn_fm_m9 21/80 Test #35: test_search_blastp_fm_sam ........ Passed 3.98 sec Start 63: test_search_tblastn_fm_sam 22/80 Test #27: test_search_blastp_sa_m9 ......... Passed 4.07 sec Start 64: test_search_tblastn_fm_bam 23/80 Test #29: test_search_blastp_sa_bam ........ Passed 4.11 sec Start 65: test_search_tblastn_fm_m9.gz 24/80 Test #25: test_search_blastp_sa_m0 ......... Passed 4.59 sec Start 66: test_search_tblastn_fm_sam.bz2 25/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.31 sec Start 67: test_search_tblastx_sa_m0 26/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.89 sec Start 68: test_search_tblastx_sa_m8 27/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.04 sec Start 69: test_search_tblastx_sa_m9 28/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.55 sec Start 70: test_search_tblastx_sa_sam 29/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.15 sec Start 71: test_search_tblastx_sa_bam 30/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 4.47 sec Start 72: test_search_tblastx_sa_m9.gz 31/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 6.53 sec Start 73: test_search_tblastx_sa_sam.bz2 32/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 3.32 sec Start 74: test_search_tblastx_fm_m0 33/80 Test #47: test_search_blastx_fm_m8 ......... Passed 3.80 sec Start 75: test_search_tblastx_fm_m8 34/80 Test #15: test_search_blastn_sa_bam ........ Passed 7.10 sec Start 76: test_search_tblastx_fm_m9 35/80 Test #43: test_search_blastx_sa_bam ........ Passed 5.26 sec Start 77: test_search_tblastx_fm_sam 36/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.55 sec Start 78: test_search_tblastx_fm_bam 37/80 Test #22: test_search_blastn_fm_bam ........ Passed 7.33 sec Start 79: test_search_tblastx_fm_m9.gz 38/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 3.48 sec Start 80: test_search_tblastx_fm_sam.bz2 39/80 Test #48: test_search_blastx_fm_m9 ......... Passed 4.29 sec 40/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 3.86 sec 41/80 Test #49: test_search_blastx_fm_sam ........ Passed 4.44 sec 42/80 Test #63: test_search_tblastn_fm_sam ....... Passed 3.57 sec 43/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 4.40 sec 44/80 Test #46: test_search_blastx_fm_m0 ......... Passed 4.81 sec 45/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 3.64 sec 46/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 3.96 sec 47/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 4.38 sec 48/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 3.37 sec 49/80 Test #56: test_search_tblastn_sa_sam ....... Passed 4.37 sec 50/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 8.07 sec 51/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 6.11 sec 52/80 Test #41: test_search_blastx_sa_m9 ......... Passed 8.23 sec 53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 4.85 sec 54/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 8.36 sec 55/80 Test #13: test_search_blastn_sa_m9 ......... Passed 8.66 sec 56/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 8.63 sec 57/80 Test #19: test_search_blastn_fm_m8 ......... Passed 8.67 sec 58/80 Test #40: test_search_blastx_sa_m8 ......... Passed 8.57 sec 59/80 Test #42: test_search_blastx_sa_sam ........ Passed 8.59 sec 60/80 Test #12: test_search_blastn_sa_m8 ......... Passed 8.72 sec 61/80 Test #20: test_search_blastn_fm_m9 ......... Passed 8.87 sec 62/80 Test #39: test_search_blastx_sa_m0 ......... Passed 8.77 sec 63/80 Test #21: test_search_blastn_fm_sam ........ Passed 9.12 sec 64/80 Test #14: test_search_blastn_sa_sam ........ Passed 9.14 sec 65/80 Test #11: test_search_blastn_sa_m0 ......... Passed 9.19 sec 66/80 Test #18: test_search_blastn_fm_m0 ......... Passed 11.25 sec 67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.60 sec 68/80 Test #71: test_search_tblastx_sa_bam ....... Passed 6.45 sec 69/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 5.55 sec 70/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 6.24 sec 71/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 6.41 sec 72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 7.13 sec 73/80 Test #77: test_search_tblastx_fm_sam ....... Passed 6.48 sec 74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 7.45 sec 75/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 9.04 sec 76/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 9.01 sec 77/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 8.00 sec 78/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 10.14 sec 79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 10.14 sec 80/80 Test #70: test_search_tblastx_sa_sam ....... Passed 10.50 sec 100% tests passed, 0 tests failed out of 80 Total Test time (real) = 16.76 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build cd build && make -j42 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda [100%] Built target lambda_indexer make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-7_amd64.buildinfo dpkg-genchanges --build=binary -O../lambda-align_1.0.3-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1380872 and its subdirectories I: Current time: Mon Jul 20 05:13:23 +14 2026 I: pbuilder-time-stamp: 1784474003 + false + set +x Sun Jul 19 15:13:23 UTC 2026 I: Signing ./b2/lambda-align_1.0.3-7_amd64.buildinfo as lambda-align_1.0.3-7_amd64.buildinfo.asc Sun Jul 19 15:13:23 UTC 2026 I: Signed ./b2/lambda-align_1.0.3-7_amd64.buildinfo as ./b2/lambda-align_1.0.3-7_amd64.buildinfo.asc Sun Jul 19 15:13:23 UTC 2026 - build #2 for lambda-align/experimental/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Sun Jul 19 15:13:23 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-EreaLIjb, removing. /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw: total 552 drwxr-xr-x 2 jenkins jenkins 4096 Jun 16 08:41 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jun 16 08:50 b2 -rw-r--r-- 1 jenkins jenkins 2114 Nov 27 2024 lambda-align_1.0.3-7.dsc -rw------- 1 jenkins jenkins 548278 Jun 16 08:41 rbuildlog.Kn5cxj8 /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b1: total 2052 -rw-r--r-- 1 jenkins jenkins 544721 Jun 16 08:41 build.log -rw-r--r-- 1 jenkins jenkins 12556 Jun 16 08:41 lambda-align_1.0.3-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2114 Jun 16 08:41 lambda-align_1.0.3-7.dsc -rw-r--r-- 1 jenkins jenkins 5731 Jun 16 08:41 lambda-align_1.0.3-7_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6613 Jun 16 08:41 lambda-align_1.0.3-7_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1352 Jun 16 08:41 lambda-align_1.0.3-7_amd64.changes -rw-r--r-- 1 jenkins jenkins 1502232 Jun 16 08:41 lambda-align_1.0.3-7_amd64.deb -rw-r--r-- 1 jenkins jenkins 1516 Jun 16 08:41 lambda-align_1.0.3-7_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b2: total 2048 -rw-r--r-- 1 jenkins jenkins 546669 Jun 16 08:50 build.log -rw-r--r-- 1 jenkins jenkins 12556 Jun 16 08:50 lambda-align_1.0.3-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2114 Jun 16 08:50 lambda-align_1.0.3-7.dsc -rw-r--r-- 1 jenkins jenkins 5742 Jun 16 08:50 lambda-align_1.0.3-7_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6624 Jun 16 08:50 lambda-align_1.0.3-7_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1352 Jun 16 08:50 lambda-align_1.0.3-7_amd64.changes -rw-r--r-- 1 jenkins jenkins 1502232 Jun 16 08:50 lambda-align_1.0.3-7_amd64.deb -rw-r--r-- 1 jenkins jenkins 1516 Jun 16 08:50 lambda-align_1.0.3-7_source.changes Mon Jun 16 08:50:23 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Mon Jun 16 08:50:24 UTC 2025 I: lambda-align_1.0.3-7_amd64.changes: Format: 1.8 Date: Wed, 27 Nov 2024 01:36:30 +0100 Source: lambda-align Binary: lambda-align Architecture: amd64 Version: 1.0.3-7 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Enrico Seiler Description: lambda-align - Local Aligner for Massive Biological DatA Changes: lambda-align (1.0.3-7) experimental; urgency=medium . * Team upload. * d/control: Experimental rebuild using the 3rd release candidate of SeqAn 2.5.0 * Added patch for the explicit seqan2 namespace. * salsa ci: added * Remove dependency on libseqan-dev for tests * d/rules: respect DEB_BUILD_OPTIONS for parallel test running. Checksums-Sha1: 658c9cbe3eae497cf09334a18a6c3a759687495a 5731 lambda-align_1.0.3-7_amd64.buildinfo 9b7afb0b064d85688ee2af14d8191edd623bc021 1502232 lambda-align_1.0.3-7_amd64.deb Checksums-Sha256: fd80815444d8556b6677353c0ccb356a28122feb4cf0cd865e195fcbf19abb59 5731 lambda-align_1.0.3-7_amd64.buildinfo 1de43fd26a88f216a3825c0045b55cd983ce809c885e23bac9744e0ca4ed64ad 1502232 lambda-align_1.0.3-7_amd64.deb Files: 840762d55cdadf9b87f139c0e07ecbc1 5731 science optional lambda-align_1.0.3-7_amd64.buildinfo 9dec65525eba664c4feb12598d65181d 1502232 science optional lambda-align_1.0.3-7_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/amd64/lambda-align_1.0.3-7.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/amd64/lambda-align_1.0.3-7.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/amd64/lambda-align_1.0.3-7.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/amd64/lambda-align_1.0.3-7.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/experimental/amd64/lambda-align_1.0.3-7_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/amd64/lambda-align_1.0.3-7.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-06-16 08:41:10.431699700 +0000 +++ b2/build.log 2025-06-16 08:50:23.719334496 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 15 20:36:59 -12 2025 -I: pbuilder-time-stamp: 1750063019 +I: Current time: Mon Jul 20 05:04:12 +14 2026 +I: pbuilder-time-stamp: 1784473452 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2155535/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 19 15:04 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='cb5bc5d670ce4abc9ed336930f38a38b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2155535' - PS1='# ' - PS2='> ' + INVOCATION_ID=ee5f9aa2120c468dabed34ccabb60d9a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1380872 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/pbuilderrc_c6In --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/pbuilderrc_HyB4 --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b2 --logfile b2/build.log lambda-align_1.0.3-7.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.27+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.27-1~bpo12+1 (2025-05-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2155535/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 61 http://deb.debian.org/debian experimental/main amd64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.0-2 [1490 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 35.1 MB in 6s (5918 kB/s) +Fetched 35.1 MB in 7s (5228 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) @@ -468,7 +500,11 @@ fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes +I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental @@ -538,7 +574,7 @@ to work with policies introduced by or earlier. --- Configuring done (1.3s) +-- Configuring done (5.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -555,28 +591,28 @@ -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build - cd build && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build +make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' +[ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o +cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -[ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o -cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp -cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp +cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); @@ -587,6 +623,20 @@ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ +In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: +/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] + 79 | public ::std::binary_function < TSav, TSav, bool > + | ^~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/string:49, + from /usr/include/c++/14/bits/locale_classes.h:40, + from /usr/include/c++/14/bits/ios_base.h:41, + from /usr/include/c++/14/ios:44, + from /usr/include/c++/14/ostream:40, + from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: +/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here + 131 | struct binary_function + | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function @@ -610,20 +660,6 @@ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: -/build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 79 | public ::std::binary_function < TSav, TSav, bool > - | ^~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/string:49, - from /usr/include/c++/14/bits/locale_classes.h:40, - from /usr/include/c++/14/bits/ios_base.h:41, - from /usr/include/c++/14/ios:44, - from /usr/include/c++/14/ostream:40, - from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: -/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); @@ -3640,15 +3676,13 @@ inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, + inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'insertStream': +/usr/include/c++/14/new: In function '_toText': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3665,7 +3699,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -3682,13 +3716,15 @@ inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, - inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_toText': +/usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3906,7 +3942,7 @@ /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda @@ -3922,6 +3958,36 @@ inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, + inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, + inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, + inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, + inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + 211 | data = (TValue *) operator new(count * sizeof(TValue)); + | ^ +/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': +/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here + 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) + | ^ +In function 'allocate', + inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, + inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, + inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, + inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, + inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, + inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, + inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); @@ -3971,11 +4037,11 @@ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: + inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': +/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4046,27 +4112,6 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] - 211 | data = (TValue *) operator new(count * sizeof(TValue)); - | ^ -/usr/include/c++/14/new: In member function 'insertStream': -/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here - 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) - | ^ -In function 'allocate', - inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, - inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, - inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, - inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, - inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, - inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, - inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, @@ -4081,11 +4126,32 @@ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: + inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': +/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': +/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here + 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) + | ^ +In function 'allocate', + inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, + inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, + inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, + inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, + inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, + inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, + inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + 211 | data = (TValue *) operator new(count * sizeof(TValue)); + | ^ +/usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4111,11 +4177,11 @@ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: + inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': +/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4141,11 +4207,11 @@ inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: + inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': +/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4157,14 +4223,16 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, - inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_popIterators.isra': +/usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4195,46 +4263,14 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] - 211 | data = (TValue *) operator new(count * sizeof(TValue)); - | ^ -/usr/include/c++/14/new: In member function 'insertStream': -/usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here - 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) - | ^ -In function 'allocate', - inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, - inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, - inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, - inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, - inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, - inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, - inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, - inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, - inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, - inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, - inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: + inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': +/usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4268,7 +4304,7 @@ /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=40 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' @@ -4276,7 +4312,7 @@ make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' -cd build/tests && ctest --parallel 40 +cd build/tests && ctest --parallel 42 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa Start 2: test_mkindex_blastn_fm @@ -4318,136 +4354,136 @@ Start 38: test_search_blastp_fm_sam.bz2 Start 39: test_search_blastx_sa_m0 Start 40: test_search_blastx_sa_m8 - 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.59 sec Start 41: test_search_blastx_sa_m9 - 2/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.72 sec Start 42: test_search_blastx_sa_sam - 3/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.80 sec + 1/80 Test #6: test_mkindex_blastx_fm ........... Passed 1.97 sec Start 43: test_search_blastx_sa_bam - 4/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.86 sec + 2/80 Test #3: test_mkindex_blastp_sa ........... Passed 1.98 sec Start 44: test_search_blastx_sa_m9.gz - 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 1.33 sec + 3/80 Test #5: test_mkindex_blastx_sa ........... Passed 2.02 sec Start 45: test_search_blastx_sa_sam.bz2 - 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 1.47 sec + 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 2.86 sec Start 46: test_search_blastx_fm_m0 - 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.53 sec + 5/80 Test #2: test_mkindex_blastn_fm ........... Passed 3.12 sec Start 47: test_search_blastx_fm_m8 - 8/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.70 sec + 6/80 Test #1: test_mkindex_blastn_sa ........... Passed 3.16 sec Start 48: test_search_blastx_fm_m9 - 9/80 Test #32: test_search_blastp_fm_m0 ......... Passed 1.69 sec + 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 3.15 sec Start 49: test_search_blastx_fm_sam -10/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.75 sec + 8/80 Test #7: test_mkindex_tblastn_sa .......... Passed 3.19 sec Start 50: test_search_blastx_fm_bam -11/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.70 sec + 9/80 Test #10: test_mkindex_tblastx_fm .......... Passed 3.23 sec Start 51: test_search_blastx_fm_m9.gz -12/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.84 sec -13/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.72 sec +10/80 Test #8: test_mkindex_tblastn_fm .......... Passed 3.25 sec Start 52: test_search_blastx_fm_sam.bz2 +11/80 Test #33: test_search_blastp_fm_m8 ......... Passed 3.44 sec Start 53: test_search_tblastn_sa_m0 -14/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.80 sec +12/80 Test #34: test_search_blastp_fm_m9 ......... Passed 3.51 sec Start 54: test_search_tblastn_sa_m8 -15/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.80 sec +13/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 3.54 sec Start 55: test_search_tblastn_sa_m9 -16/80 Test #33: test_search_blastp_fm_m8 ......... Passed 1.78 sec +14/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 3.54 sec Start 56: test_search_tblastn_sa_sam -17/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.83 sec -18/80 Test #35: test_search_blastp_fm_sam ........ Passed 1.78 sec +15/80 Test #36: test_search_blastp_fm_bam ........ Passed 3.55 sec Start 57: test_search_tblastn_sa_bam +16/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 3.58 sec Start 58: test_search_tblastn_sa_m9.gz -19/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.87 sec +17/80 Test #26: test_search_blastp_sa_m8 ......... Passed 3.76 sec Start 59: test_search_tblastn_sa_sam.bz2 -20/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.84 sec +18/80 Test #32: test_search_blastp_fm_m0 ......... Passed 3.77 sec Start 60: test_search_tblastn_fm_m0 -21/80 Test #36: test_search_blastp_fm_bam ........ Passed 1.89 sec +19/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 3.82 sec Start 61: test_search_tblastn_fm_m8 -22/80 Test #10: test_mkindex_tblastx_fm .......... Passed 2.05 sec +20/80 Test #28: test_search_blastp_sa_sam ........ Passed 3.97 sec Start 62: test_search_tblastn_fm_m9 -23/80 Test #25: test_search_blastp_sa_m0 ......... Passed 2.12 sec +21/80 Test #35: test_search_blastp_fm_sam ........ Passed 3.98 sec Start 63: test_search_tblastn_fm_sam -24/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 2.22 sec +22/80 Test #27: test_search_blastp_sa_m9 ......... Passed 4.07 sec Start 64: test_search_tblastn_fm_bam -25/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.30 sec +23/80 Test #29: test_search_blastp_sa_bam ........ Passed 4.11 sec Start 65: test_search_tblastn_fm_m9.gz -26/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.49 sec +24/80 Test #25: test_search_blastp_sa_m0 ......... Passed 4.59 sec Start 66: test_search_tblastn_fm_sam.bz2 -27/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.04 sec +25/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.31 sec Start 67: test_search_tblastx_sa_m0 -28/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.01 sec +26/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.89 sec Start 68: test_search_tblastx_sa_m8 -29/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.58 sec -30/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.19 sec +27/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.04 sec Start 69: test_search_tblastx_sa_m9 +28/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.55 sec Start 70: test_search_tblastx_sa_sam -31/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.23 sec -32/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 2.01 sec +29/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.15 sec Start 71: test_search_tblastx_sa_bam +30/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 4.47 sec Start 72: test_search_tblastx_sa_m9.gz -33/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 2.23 sec +31/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 6.53 sec Start 73: test_search_tblastx_sa_sam.bz2 -34/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.31 sec +32/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 3.32 sec Start 74: test_search_tblastx_fm_m0 -35/80 Test #50: test_search_blastx_fm_bam ........ Passed 2.29 sec +33/80 Test #47: test_search_blastx_fm_m8 ......... Passed 3.80 sec Start 75: test_search_tblastx_fm_m8 -36/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.33 sec +34/80 Test #15: test_search_blastn_sa_bam ........ Passed 7.10 sec Start 76: test_search_tblastx_fm_m9 -37/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.33 sec +35/80 Test #43: test_search_blastx_sa_bam ........ Passed 5.26 sec Start 77: test_search_tblastx_fm_sam -38/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.47 sec +36/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.55 sec Start 78: test_search_tblastx_fm_bam -39/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.32 sec +37/80 Test #22: test_search_blastn_fm_bam ........ Passed 7.33 sec Start 79: test_search_tblastx_fm_m9.gz -40/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.60 sec +38/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 3.48 sec Start 80: test_search_tblastx_fm_sam.bz2 -41/80 Test #40: test_search_blastx_sa_m8 ......... Passed 4.77 sec -42/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.40 sec -43/80 Test #14: test_search_blastn_sa_sam ........ Passed 5.38 sec -44/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 3.54 sec -45/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 4.57 sec -46/80 Test #22: test_search_blastn_fm_bam ........ Passed 5.49 sec -47/80 Test #12: test_search_blastn_sa_m8 ......... Passed 5.53 sec -48/80 Test #15: test_search_blastn_sa_bam ........ Passed 5.59 sec -49/80 Test #20: test_search_blastn_fm_m9 ......... Passed 5.58 sec -50/80 Test #41: test_search_blastx_sa_m9 ......... Passed 5.02 sec -51/80 Test #42: test_search_blastx_sa_sam ........ Passed 4.89 sec -52/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 5.57 sec -53/80 Test #19: test_search_blastn_fm_m8 ......... Passed 6.02 sec -54/80 Test #11: test_search_blastn_sa_m0 ......... Passed 6.12 sec -55/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 6.11 sec -56/80 Test #13: test_search_blastn_sa_m9 ......... Passed 6.13 sec -57/80 Test #21: test_search_blastn_fm_sam ........ Passed 6.10 sec -58/80 Test #39: test_search_blastx_sa_m0 ......... Passed 6.00 sec -59/80 Test #43: test_search_blastx_sa_bam ........ Passed 5.34 sec -60/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 4.29 sec -61/80 Test #18: test_search_blastn_fm_m0 ......... Passed 6.13 sec -62/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.21 sec -63/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 4.91 sec -64/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 2.31 sec -65/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 6.40 sec -66/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 6.66 sec -67/80 Test #71: test_search_tblastx_sa_bam ....... Passed 4.72 sec -68/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 4.55 sec -69/80 Test #77: test_search_tblastx_fm_sam ....... Passed 4.56 sec -70/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 4.77 sec -71/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.55 sec -72/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 4.59 sec -73/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 5.12 sec -74/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 5.25 sec -75/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 5.28 sec -76/80 Test #70: test_search_tblastx_sa_sam ....... Passed 5.52 sec -77/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 5.58 sec -78/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 6.00 sec -79/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 6.18 sec -80/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 7.49 sec +39/80 Test #48: test_search_blastx_fm_m9 ......... Passed 4.29 sec +40/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 3.86 sec +41/80 Test #49: test_search_blastx_fm_sam ........ Passed 4.44 sec +42/80 Test #63: test_search_tblastn_fm_sam ....... Passed 3.57 sec +43/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 4.40 sec +44/80 Test #46: test_search_blastx_fm_m0 ......... Passed 4.81 sec +45/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 3.64 sec +46/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 3.96 sec +47/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 4.38 sec +48/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 3.37 sec +49/80 Test #56: test_search_tblastn_sa_sam ....... Passed 4.37 sec +50/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 8.07 sec +51/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 6.11 sec +52/80 Test #41: test_search_blastx_sa_m9 ......... Passed 8.23 sec +53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 4.85 sec +54/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 8.36 sec +55/80 Test #13: test_search_blastn_sa_m9 ......... Passed 8.66 sec +56/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 8.63 sec +57/80 Test #19: test_search_blastn_fm_m8 ......... Passed 8.67 sec +58/80 Test #40: test_search_blastx_sa_m8 ......... Passed 8.57 sec +59/80 Test #42: test_search_blastx_sa_sam ........ Passed 8.59 sec +60/80 Test #12: test_search_blastn_sa_m8 ......... Passed 8.72 sec +61/80 Test #20: test_search_blastn_fm_m9 ......... Passed 8.87 sec +62/80 Test #39: test_search_blastx_sa_m0 ......... Passed 8.77 sec +63/80 Test #21: test_search_blastn_fm_sam ........ Passed 9.12 sec +64/80 Test #14: test_search_blastn_sa_sam ........ Passed 9.14 sec +65/80 Test #11: test_search_blastn_sa_m0 ......... Passed 9.19 sec +66/80 Test #18: test_search_blastn_fm_m0 ......... Passed 11.25 sec +67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.60 sec +68/80 Test #71: test_search_tblastx_sa_bam ....... Passed 6.45 sec +69/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 5.55 sec +70/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 6.24 sec +71/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 6.41 sec +72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 7.13 sec +73/80 Test #77: test_search_tblastx_fm_sam ....... Passed 6.48 sec +74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 7.45 sec +75/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 9.04 sec +76/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 9.01 sec +77/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 8.00 sec +78/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 10.14 sec +79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 10.14 sec +80/80 Test #70: test_search_tblastx_sa_sam ....... Passed 10.50 sec 100% tests passed, 0 tests failed out of 80 -Total Test time (real) = 11.60 sec +Total Test time (real) = 16.76 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build - cd build && make -j40 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build && make -j42 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks @@ -4465,12 +4501,12 @@ make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' -make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. +make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -[ 50%] Built target lambda_indexer [100%] Built target lambda +[100%] Built target lambda_indexer make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall @@ -4537,12 +4573,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1380872/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2155535 and its subdirectories -I: Current time: Sun Jun 15 20:41:09 -12 2025 -I: pbuilder-time-stamp: 1750063269 +I: removing directory /srv/workspace/pbuilder/1380872 and its subdirectories +I: Current time: Mon Jul 20 05:13:23 +14 2026 +I: pbuilder-time-stamp: 1784474003 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/amd64/lambda-align_1.0.3-7.diff: 86.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/amd64/lambda-align_1.0.3-7.diff.gz b2/build.log: 96.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 96.3% -- replaced with stdout Mon Jun 16 08:50:24 UTC 2025 I: diffoscope 298 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_lambda-align_experimental_amd64_1750063824 + touch /var/log/reproducible-builds/diffoscope_stamp_lambda-align_experimental_amd64_1750063824 + RESULT=0 + systemd-run '--description=diffoscope on lambda-align/1.0.3-7 in experimental/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_21-43817 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw --run-session -c jenkins-reproducible-unstable-diffoscope-6a316a3f-9ee5-422a-b987-77c325f7ffff -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/dbd-tmp-qLFWBZV ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/lambda-align_1.0.3-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/lambda-align_1.0.3-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/lambda-align_1.0.3-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b1/lambda-align_1.0.3-7_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b2/lambda-align_1.0.3-7_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_21-43817.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/lambda-align_1.0.3-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/lambda-align_1.0.3-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/lambda-align_1.0.3-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b1/lambda-align_1.0.3-7_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.wRSjIurw/b2/lambda-align_1.0.3-7_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 159ms CPU time consumed: 160ms _ _ _ _ _ | | __ _ _ __ ___ | |__ __| | __ _ __ _| (_) __ _ _ __ | |/ _` | '_ ` _ \| '_ \ / _` |/ _` |_____ / _` | | |/ _` | '_ \ | | (_| | | | | | | |_) | (_| | (_| |_____| (_| | | | (_| | | | | |_|\__,_|_| |_| |_|_.__/ \__,_|\__,_| \__,_|_|_|\__, |_| |_| |___/ Mon Jun 16 08:50:25 UTC 2025 I: diffoscope 298 found no differences in the changes files, and a .buildinfo file also exists. Mon Jun 16 08:50:25 UTC 2025 I: lambda-align from experimental built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-06-16 08:50:25] INFO: Starting at 2025-06-16 08:50:25.706747 [2025-06-16 08:50:25] INFO: Generating the pages of 1 package(s) [2025-06-16 08:50:25] CRITICAL: https://tests.reproducible-builds.org/debian/experimental/amd64/lambda-align didn't produce a buildlog, even though it has been built. [2025-06-16 08:50:25] INFO: Finished at 2025-06-16 08:50:25.966853, took: 0:00:00.260108 Mon Jun 16 08:50:26 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/experimental/amd64/lambda-align.html Mon Jun 16 08:50:26 UTC 2025 I: Removing signed lambda-align_1.0.3-7_amd64.buildinfo.asc files: removed './b1/lambda-align_1.0.3-7_amd64.buildinfo.asc' removed './b2/lambda-align_1.0.3-7_amd64.buildinfo.asc' 1750063826 amd64 experimental lambda-align Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/amd64/lambda-align_1.0.3-7.rbuild.log: 95.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/amd64/lambda-align_1.0.3-7.rbuild.log.gz [2025-06-16 08:50:26] INFO: Starting at 2025-06-16 08:50:26.223187 [2025-06-16 08:50:26] INFO: Generating the pages of 1 package(s) [2025-06-16 08:50:26] INFO: Finished at 2025-06-16 08:50:26.472136, took: 0:00:00.248952 All cleanup done. Mon Jun 16 08:50:26 UTC 2025 - total duration: 0h 13m 46s. Mon Jun 16 08:50:26 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-BVnoFlWO, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 13min 46.742s CPU time consumed: 4.298s